SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    831001 8idt:Y (2.8) BS01 rna ? GO:0002181 ... P18621 37491604
    831002 8idt:Y (2.8) BS02 rna ? GO:0002181 ... P18621 37491604
    831003 8idt:Z (2.8) BS01 rna ? GO:0002181 ... Q07020 37491604
    831004 8idt:a (2.8) BS01 rna ? GO:0002181 ... P84098 37491604
    831005 8idt:b (2.8) BS01 rna ? GO:0002181 ... Q02543 37491604
    831006 8idt:b (2.8) BS02 rna ? GO:0002181 ... Q02543 37491604
    831007 8idt:c (2.8) BS01 rna ? GO:0001650 ... P46778 37491604
    831008 8idt:d (2.8) BS01 rna ? GO:0002181 ... P35268 37491604
    831009 8idt:e (2.8) BS01 rna ? GO:0000122 ... P62829 37491604
    831010 8idt:g (2.8) BS01 rna ? GO:0002181 ... P62750 37491604
    831011 8idt:g (2.8) BS02 rna ? GO:0002181 ... P62750 37491604
    831012 8idt:h (2.8) BS01 rna ? GO:0002181 ... P61254 37491604
    831013 8idt:h (2.8) BS02 rna ? GO:0002181 ... P61254 37491604
    831014 8idt:i (2.8) BS01 rna ? GO:0002181 ... P61353 37491604
    831015 8idt:j (2.8) BS01 rna ? GO:0002181 ... P62899 37491604
    831016 8idt:k (2.8) BS01 rna ? GO:0002181 ... P62910 37491604
    831017 8idt:l (2.8) BS01 rna ? GO:0002181 ... P46779 37491604
    831018 8idt:m (2.8) BS01 rna ? GO:0002181 ... P62917 37491604
    831019 8idt:n (2.8) BS01 rna ? GO:0002181 ... P18077 37491604
    831020 8idt:o (2.8) BS01 rna ? GO:0002181 ... Q02878 37491604
    831021 8idt:p (2.8) BS01 rna ? GO:0000463 ... P18124 37491604
    831022 8idt:p (2.8) BS02 rna ? GO:0000463 ... P18124 37491604
    831023 8idt:r (2.8) BS01 rna ? GO:0000027 ... P46777 37491604
    831024 8idt:r (2.8) BS02 rna ? GO:0000027 ... P46777 37491604
    831025 8idt:y (2.8) BS01 rna ? GO:0002181 ... P30050 37491604
    831026 8idt:z (2.8) BS01 rna ? GO:0003723 ... Q9BRT6 37491604
    831027 8idu:A (2.0) BS01 DQA 4.2.1.10 GO:0003855 ... O52377 38151830
    831028 8idu:B (2.0) BS01 DQA 4.2.1.10 GO:0003855 ... O52377 38151830
    831029 8idu:C (2.0) BS01 DQA 4.2.1.10 GO:0003855 ... O52377 38151830
    831030 8idu:D (2.0) BS01 DQA 4.2.1.10 GO:0003855 ... O52377 38151830
    831031 8idu:E (2.0) BS01 DQA 4.2.1.10 GO:0003855 ... O52377 38151830
    831032 8idu:F (2.0) BS01 DQA 4.2.1.10 GO:0003855 ... O52377 38151830
    831033 8idw:A (2.304) BS01 AN2 N/A N/A N/A N/A
    831034 8idw:B (2.304) BS01 AN2 N/A N/A N/A N/A
    831035 8idw:C (2.304) BS01 AN2 N/A N/A N/A N/A
    831036 8idw:D (2.304) BS01 AN2 N/A N/A N/A N/A
    831037 8idy:4 (3.0) BS01 rna ? GO:0001649 ... Q9BZE4 37491604
    831038 8idy:4 (3.0) BS02 rna ? GO:0001649 ... Q9BZE4 37491604
    831039 8idy:6 (3.0) BS01 rna ? GO:0000054 ... P56537 37491604
    831040 8idy:7 (3.0) BS01 rna ? GO:0003735 ... Q9UHA3 37491604
    831041 8idy:9 (3.0) BS01 rna ? GO:0003676 ... O00488 37491604
    831042 8idy:A (3.0) BS01 rna ? GO:0003723 ... Q13823 37491604
    831043 8idy:A (3.0) BS02 GDP ? GO:0003723 ... Q13823 37491604
    831044 8idy:B (3.0) BS01 rna ? GO:0002181 ... P39023 37491604
    831045 8idy:C (3.0) BS01 rna ? GO:0002181 ... P47914 37491604
    831046 8idy:D (3.0) BS01 rna ? GO:0002181 ... P36578 37491604
    831047 8idy:D (3.0) BS02 rna ? GO:0002181 ... P36578 37491604
    831048 8idy:E (3.0) BS01 rna ? GO:0002181 ... P62888 37491604
    831049 8idy:F (3.0) BS01 rna ? GO:0002181 ... P49207 37491604
    831050 8idy:G (3.0) BS01 rna ? GO:0000470 ... P62424 37491604
    831051 8idy:G (3.0) BS02 rna ? GO:0000470 ... P62424 37491604
    831052 8idy:H (3.0) BS01 rna ? GO:0000463 ... P42766 37491604
    831053 8idy:H (3.0) BS02 rna ? GO:0000463 ... P42766 37491604
    831054 8idy:I (3.0) BS01 rna ? GO:0002181 ... P32969 37491604
    831055 8idy:J (3.0) BS01 rna ? GO:0000027 ... Q9UKD2 37491604
    831056 8idy:K (3.0) BS01 rna ? GO:0002181 ... Q9Y3U8 37491604
    831057 8idy:L (3.0) BS01 rna ? GO:0002181 ... P46776 37491604
    831058 8idy:M (3.0) BS01 rna ? GO:0000448 ... P61927 37491604
    831059 8idy:M (3.0) BS02 rna ? GO:0000448 ... P61927 37491604
    831060 8idy:N (3.0) BS01 rna ? GO:0000027 ... P62913 37491604
    831061 8idy:N (3.0) BS02 rna ? GO:0000027 ... P62913 37491604
    831062 8idy:O (3.0) BS01 rna ? GO:0002181 ... P63173 37491604
    831063 8idy:P (3.0) BS01 rna ? GO:0002181 ... P62891 37491604
    831064 8idy:P (3.0) BS02 rna ? GO:0002181 ... P62891 37491604
    831065 8idy:Q (3.0) BS01 rna ? GO:0002181 ... P26373 37491604
    831066 8idy:Q (3.0) BS02 rna ? GO:0002181 ... P26373 37491604
    831067 8idy:R (3.0) BS01 rna ? GO:0005515 ... Q96EY4 37491604
    831068 8idy:R (3.0) BS02 rna ? GO:0005515 ... Q96EY4 37491604
    831069 8idy:S (3.0) BS01 rna ? GO:0002181 ... P50914 37491604
    831070 8idy:T (3.0) BS01 rna ? N/A Q9UNZ5 37491604
    831071 8idy:U (3.0) BS01 rna ? GO:0002181 ... P61313 37491604
    831072 8idy:U (3.0) BS02 rna ? GO:0002181 ... P61313 37491604
    831073 8idy:V (3.0) BS01 rna ? GO:0002181 ... P40429 37491604
    831074 8idy:W (3.0) BS01 rna ? GO:0002181 ... P83881 37491604
    831075 8idy:X (3.0) BS01 rna ? GO:0002181 ... P61513 37491604
    831076 8idy:Y (3.0) BS01 rna ? GO:0002181 ... P18621 37491604
    831077 8idy:Y (3.0) BS02 rna ? GO:0002181 ... P18621 37491604
    831078 8idy:Z (3.0) BS01 rna ? GO:0002181 ... Q07020 37491604
    831079 8idy:a (3.0) BS01 rna ? GO:0002181 ... P84098 37491604
    831080 8idy:b (3.0) BS01 rna ? GO:0002181 ... Q02543 37491604
    831081 8idy:b (3.0) BS02 rna ? GO:0002181 ... Q02543 37491604
    831082 8idy:c (3.0) BS01 rna ? GO:0001650 ... P46778 37491604
    831083 8idy:d (3.0) BS01 rna ? GO:0002181 ... P35268 37491604
    831084 8idy:e (3.0) BS01 rna ? GO:0000122 ... P62829 37491604
    831085 8idy:g (3.0) BS01 rna ? GO:0002181 ... P62750 37491604
    831086 8idy:g (3.0) BS02 rna ? GO:0002181 ... P62750 37491604
    831087 8idy:h (3.0) BS01 rna ? GO:0002181 ... P61254 37491604
    831088 8idy:h (3.0) BS02 rna ? GO:0002181 ... P61254 37491604
    831089 8idy:i (3.0) BS01 rna ? GO:0002181 ... P61353 37491604
    831090 8idy:j (3.0) BS01 rna ? GO:0002181 ... P62899 37491604
    831091 8idy:k (3.0) BS01 rna ? GO:0002181 ... P62910 37491604
    831092 8idy:l (3.0) BS01 rna ? GO:0002181 ... P46779 37491604
    831093 8idy:m (3.0) BS01 rna ? GO:0002181 ... P62917 37491604
    831094 8idy:n (3.0) BS01 rna ? GO:0002181 ... P18077 37491604
    831095 8idy:o (3.0) BS01 rna ? GO:0002181 ... Q02878 37491604
    831096 8idy:p (3.0) BS01 rna ? GO:0000463 ... P18124 37491604
    831097 8idy:p (3.0) BS02 rna ? GO:0000463 ... P18124 37491604
    831098 8idy:r (3.0) BS01 rna ? GO:0000027 ... P46777 37491604
    831099 8idy:r (3.0) BS02 rna ? GO:0000027 ... P46777 37491604
    831100 8idy:t (3.0) BS01 rna ? GO:0002181 ... P62906 37491604
    831101 8idy:u (3.0) BS01 rna ? GO:0000055 ... Q9NVU7 37491604
    831102 8idy:v (3.0) BS01 rna ? GO:0000460 ... O95478 37491604
    831103 8idy:y (3.0) BS01 rna ? GO:0002181 ... P30050 37491604
    831104 8idy:z (3.0) BS01 rna ? GO:0003723 ... Q9BRT6 37491604
    831105 8ie3:4 (3.3) BS01 rna ? GO:0001649 ... Q9BZE4 37491604
    831106 8ie3:4 (3.3) BS02 rna ? GO:0001649 ... Q9BZE4 37491604
    831107 8ie3:6 (3.3) BS01 rna ? GO:0000054 ... P56537 37491604
    831108 8ie3:7 (3.3) BS01 rna ? GO:0003735 ... Q9UHA3 37491604
    831109 8ie3:9 (3.3) BS01 rna ? GO:0003676 ... O00488 37491604
    831110 8ie3:A (3.3) BS01 rna ? GO:0003723 ... Q13823 37491604
    831111 8ie3:B (3.3) BS01 rna ? GO:0002181 ... P39023 37491604
    831112 8ie3:C (3.3) BS01 rna ? GO:0002181 ... P47914 37491604
    831113 8ie3:D (3.3) BS01 rna ? GO:0002181 ... P36578 37491604
    831114 8ie3:D (3.3) BS02 rna ? GO:0002181 ... P36578 37491604
    831115 8ie3:E (3.3) BS01 rna ? GO:0002181 ... P62888 37491604
    831116 8ie3:F (3.3) BS01 rna ? GO:0002181 ... P49207 37491604
    831117 8ie3:G (3.3) BS01 rna ? GO:0000470 ... P62424 37491604
    831118 8ie3:G (3.3) BS02 rna ? GO:0000470 ... P62424 37491604
    831119 8ie3:H (3.3) BS01 rna ? GO:0000463 ... P42766 37491604
    831120 8ie3:H (3.3) BS02 rna ? GO:0000463 ... P42766 37491604
    831121 8ie3:I (3.3) BS01 rna ? GO:0002181 ... P32969 37491604
    831122 8ie3:J (3.3) BS01 rna ? GO:0000027 ... Q9UKD2 37491604
    831123 8ie3:K (3.3) BS01 rna ? GO:0002181 ... Q9Y3U8 37491604
    831124 8ie3:L (3.3) BS01 rna ? GO:0002181 ... P46776 37491604
    831125 8ie3:M (3.3) BS01 rna ? GO:0000448 ... P61927 37491604
    831126 8ie3:M (3.3) BS02 rna ? GO:0000448 ... P61927 37491604
    831127 8ie3:O (3.3) BS01 rna ? GO:0002181 ... P63173 37491604
    831128 8ie3:P (3.3) BS01 rna ? GO:0002181 ... P62891 37491604
    831129 8ie3:P (3.3) BS02 rna ? GO:0002181 ... P62891 37491604
    831130 8ie3:Q (3.3) BS01 rna ? GO:0002181 ... P26373 37491604
    831131 8ie3:Q (3.3) BS02 rna ? GO:0002181 ... P26373 37491604
    831132 8ie3:R (3.3) BS01 rna ? GO:0000460 ... O95478 37491604
    831133 8ie3:S (3.3) BS01 rna ? GO:0002181 ... P50914 37491604
    831134 8ie3:T (3.3) BS01 rna ? GO:0000027 ... P62913 37491604
    831135 8ie3:T (3.3) BS02 rna ? GO:0000027 ... P62913 37491604
    831136 8ie3:U (3.3) BS01 rna ? GO:0002181 ... P61313 37491604
    831137 8ie3:U (3.3) BS02 rna ? GO:0002181 ... P61313 37491604
    831138 8ie3:V (3.3) BS01 rna ? GO:0002181 ... P40429 37491604
    831139 8ie3:X (3.3) BS01 rna ? GO:0002181 ... P61513 37491604
    831140 8ie3:Y (3.3) BS01 rna ? GO:0002181 ... P18621 37491604
    831141 8ie3:Y (3.3) BS02 rna ? GO:0002181 ... P18621 37491604
    831142 8ie3:Z (3.3) BS01 rna ? GO:0002181 ... Q07020 37491604
    831143 8ie3:a (3.3) BS01 rna ? GO:0002181 ... P84098 37491604
    831144 8ie3:b (3.3) BS01 rna ? GO:0002181 ... Q02543 37491604
    831145 8ie3:b (3.3) BS02 rna ? GO:0002181 ... Q02543 37491604
    831146 8ie3:c (3.3) BS01 rna ? GO:0001650 ... P46778 37491604
    831147 8ie3:c (3.3) BS02 rna ? GO:0001650 ... P46778 37491604
    831148 8ie3:d (3.3) BS01 rna ? GO:0002181 ... P35268 37491604
    831149 8ie3:e (3.3) BS01 rna ? GO:0000122 ... P62829 37491604
    831150 8ie3:g (3.3) BS01 rna ? GO:0002181 ... P62750 37491604
    831151 8ie3:g (3.3) BS02 rna ? GO:0002181 ... P62750 37491604
    831152 8ie3:h (3.3) BS01 rna ? GO:0002181 ... P61254 37491604
    831153 8ie3:h (3.3) BS02 rna ? GO:0002181 ... P61254 37491604
    831154 8ie3:i (3.3) BS01 rna ? GO:0002181 ... P61353 37491604
    831155 8ie3:j (3.3) BS01 rna ? GO:0002181 ... P62899 37491604
    831156 8ie3:k (3.3) BS01 rna ? GO:0002181 ... P62910 37491604
    831157 8ie3:l (3.3) BS01 rna ? GO:0002181 ... P46779 37491604
    831158 8ie3:m (3.3) BS01 rna ? GO:0002181 ... P62917 37491604
    831159 8ie3:n (3.3) BS01 rna ? GO:0002181 ... P18077 37491604
    831160 8ie3:o (3.3) BS01 rna ? GO:0002181 ... Q02878 37491604
    831161 8ie3:p (3.3) BS01 rna ? GO:0000463 ... P18124 37491604
    831162 8ie3:p (3.3) BS02 rna ? GO:0000463 ... P18124 37491604
    831163 8ie3:r (3.3) BS01 rna ? GO:0000027 ... P46777 37491604
    831164 8ie3:r (3.3) BS02 rna ? GO:0000027 ... P46777 37491604
    831165 8ie3:z (3.3) BS01 rna ? GO:0003723 ... Q9BRT6 37491604
    831166 8ie5:A (1.803) BS01 EZE 2.7.11.1 GO:0004672 ... P53355 37171222
    831167 8ie6:A (1.701) BS01 8KZ 2.7.11.1 GO:0004672 ... P53355 37171222
    831168 8ie7:A (1.849) BS01 3RL 2.7.11.1 GO:0004672 ... P53355 37171222
    831169 8ie8:A (1.75) BS01 P5O 2.7.11.1 GO:0004672 ... P53355 37171222
    831170 8ieg:A (3.44) BS01 ZN 2.3.2.27 GO:0004842 ... Q07457 37633270
    831171 8ieg:A (3.44) BS02 ZN 2.3.2.27 GO:0004842 ... Q07457 37633270
    831172 8ieg:B (3.44) BS01 ZN 2.3.2.27 GO:0004842 ... Q07457 37633270
    831173 8ieg:B (3.44) BS02 ZN 2.3.2.27 GO:0004842 ... Q07457 37633270
    831174 8ieg:C (3.44) BS01 dna ? GO:0000786 ... P04908 37633270
    831175 8ieg:C (3.44) BS02 dna ? GO:0000786 ... P04908 37633270
    831176 8ieg:D (3.44) BS01 dna ? GO:0000786 ... O60814 37633270
    831177 8ieg:D (3.44) BS02 dna ? GO:0000786 ... O60814 37633270
    831178 8ieg:E (3.44) BS01 dna ? GO:0000786 ... P68431 37633270
    831179 8ieg:E (3.44) BS02 dna ? GO:0000786 ... P68431 37633270
    831180 8ieg:F (3.44) BS01 dna ? GO:0003677 ... P62805 37633270
    831181 8ieg:F (3.44) BS02 dna ? GO:0003677 ... P62805 37633270
    831182 8ieg:G (3.44) BS01 dna ? GO:0000786 ... P04908 37633270
    831183 8ieg:G (3.44) BS02 dna ? GO:0000786 ... P04908 37633270
    831184 8ieg:H (3.44) BS01 dna ? GO:0000786 ... O60814 37633270
    831185 8ieg:H (3.44) BS02 dna ? GO:0000786 ... O60814 37633270
    831186 8ieg:K (3.44) BS01 dna ? GO:0000786 ... P68431 37633270
    831187 8ieg:K (3.44) BS02 dna ? GO:0000786 ... P68431 37633270
    831188 8ieg:L (3.44) BS01 dna ? GO:0003677 ... P62805 37633270
    831189 8ieg:L (3.44) BS02 dna ? GO:0003677 ... P62805 37633270
    831190 8iej:A (3.12) BS01 ZN 2.3.2.27 GO:0004842 ... O75150 37633270
    831191 8iej:A (3.12) BS02 ZN 2.3.2.27 GO:0004842 ... O75150 37633270
    831192 8iej:C (3.12) BS01 dna ? GO:0000786 ... P04908 37633270
    831193 8iej:C (3.12) BS02 dna ? GO:0000786 ... P04908 37633270
    831194 8iej:D (3.12) BS01 dna ? GO:0000786 ... O60814 37633270
    831195 8iej:D (3.12) BS02 dna ? GO:0000786 ... O60814 37633270
    831196 8iej:E (3.12) BS01 dna ? GO:0000786 ... P68431 37633270
    831197 8iej:E (3.12) BS02 dna ? GO:0000786 ... P68431 37633270
    831198 8iej:F (3.12) BS01 dna ? GO:0003677 ... P62805 37633270
    831199 8iej:F (3.12) BS02 dna ? GO:0003677 ... P62805 37633270
    831200 8iej:G (3.12) BS01 dna ? GO:0000786 ... P04908 37633270

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).