SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    831201 8irh:h (2.25) BS01 CLA ? GO:0009523 ... P19052 38297122
    831202 8irh:h (2.25) BS02 CLA ? GO:0009523 ... P19052 38297122
    831203 8irh:h (2.25) BS03 CLA ? GO:0009523 ... P19052 38297122
    831204 8irh:h (2.25) BS04 CLA ? GO:0009523 ... P19052 38297122
    831205 8irh:i (2.25) BS01 CLA ? GO:0005737 ... P12240 38297122
    831206 8irh:j (2.25) BS01 MG ? GO:0009523 ... Q7DGD4 38297122
    831207 8irh:k (2.25) BS01 peptide ? GO:0005737 ... P19054 38297122
    831208 8irh:k (2.25) BS02 CLA ? GO:0005737 ... P19054 38297122
    831209 8irh:k (2.25) BS03 CLA ? GO:0005737 ... P19054 38297122
    831210 8irh:o (2.25) BS01 CA ? GO:0009523 ... D0VWR2 38297122
    831211 8irh:v (2.25) BS01 HEC ? GO:0005506 ... P0A387 38297122
    831212 8irh:z (2.25) BS01 peptide ? GO:0009523 ... D0VWR5 38297122
    831213 8iri:A (2.25) BS01 OEY 1.10.3.9 GO:0005506 ... P51765 38297122
    831214 8iri:A (2.25) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    831215 8iri:A (2.25) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    831216 8iri:A (2.25) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    831217 8iri:A (2.25) BS05 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    831218 8iri:A (2.25) BS06 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    831219 8iri:A (2.25) BS07 OEX 1.10.3.9 GO:0005506 ... P51765 38297122
    831220 8iri:A (2.25) BS08 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    831221 8iri:A (2.25) BS09 FE2 1.10.3.9 GO:0005506 ... P51765 38297122
    831222 8iri:A (2.25) BS10 BCT 1.10.3.9 GO:0005506 ... P51765 38297122
    831223 8iri:B (2.25) BS01 CLA ? GO:0009521 ... D0VWR1 38297122
    831224 8iri:B (2.25) BS02 CLA ? GO:0009521 ... D0VWR1 38297122
    831225 8iri:B (2.25) BS03 CLA ? GO:0009521 ... D0VWR1 38297122
    831226 8iri:B (2.25) BS04 CLA ? GO:0009521 ... D0VWR1 38297122
    831227 8iri:B (2.25) BS05 CLA ? GO:0009521 ... D0VWR1 38297122
    831228 8iri:B (2.25) BS06 CLA ? GO:0009521 ... D0VWR1 38297122
    831229 8iri:B (2.25) BS07 CLA ? GO:0009521 ... D0VWR1 38297122
    831230 8iri:B (2.25) BS08 CLA ? GO:0009521 ... D0VWR1 38297122
    831231 8iri:B (2.25) BS09 CLA ? GO:0009521 ... D0VWR1 38297122
    831232 8iri:B (2.25) BS10 CLA ? GO:0009521 ... D0VWR1 38297122
    831233 8iri:B (2.25) BS11 CLA ? GO:0009521 ... D0VWR1 38297122
    831234 8iri:B (2.25) BS12 CLA ? GO:0009521 ... D0VWR1 38297122
    831235 8iri:B (2.25) BS13 CLA ? GO:0009521 ... D0VWR1 38297122
    831236 8iri:B (2.25) BS14 CLA ? GO:0009521 ... D0VWR1 38297122
    831237 8iri:B (2.25) BS15 CLA ? GO:0009521 ... D0VWR1 38297122
    831238 8iri:B (2.25) BS16 CLA ? GO:0009521 ... D0VWR1 38297122
    831239 8iri:C (2.25) BS01 OEY ? GO:0005737 ... D0VWR7 38297122
    831240 8iri:C (2.25) BS02 OEX ? GO:0005737 ... D0VWR7 38297122
    831241 8iri:C (2.25) BS03 CLA ? GO:0005737 ... D0VWR7 38297122
    831242 8iri:C (2.25) BS04 CLA ? GO:0005737 ... D0VWR7 38297122
    831243 8iri:C (2.25) BS05 CLA ? GO:0005737 ... D0VWR7 38297122
    831244 8iri:C (2.25) BS06 CLA ? GO:0005737 ... D0VWR7 38297122
    831245 8iri:C (2.25) BS07 CLA ? GO:0005737 ... D0VWR7 38297122
    831246 8iri:C (2.25) BS08 CLA ? GO:0005737 ... D0VWR7 38297122
    831247 8iri:C (2.25) BS09 CLA ? GO:0005737 ... D0VWR7 38297122
    831248 8iri:C (2.25) BS10 CLA ? GO:0005737 ... D0VWR7 38297122
    831249 8iri:C (2.25) BS11 CLA ? GO:0005737 ... D0VWR7 38297122
    831250 8iri:C (2.25) BS12 CLA ? GO:0005737 ... D0VWR7 38297122
    831251 8iri:C (2.25) BS13 CLA ? GO:0005737 ... D0VWR7 38297122
    831252 8iri:C (2.25) BS14 CLA ? GO:0005737 ... D0VWR7 38297122
    831253 8iri:C (2.25) BS15 CLA ? GO:0005737 ... D0VWR7 38297122
    831254 8iri:C (2.25) BS16 CA ? GO:0005737 ... D0VWR7 38297122
    831255 8iri:D (2.25) BS01 CLA 1.10.3.9 GO:0005737 ... D0VWR8 38297122
    831256 8iri:D (2.25) BS02 CLA 1.10.3.9 GO:0005737 ... D0VWR8 38297122
    831257 8iri:D (2.25) BS03 PHO 1.10.3.9 GO:0005737 ... D0VWR8 38297122
    831258 8iri:D (2.25) BS04 PHO 1.10.3.9 GO:0005737 ... D0VWR8 38297122
    831259 8iri:D (2.25) BS05 CLA 1.10.3.9 GO:0005737 ... D0VWR8 38297122
    831260 8iri:D (2.25) BS06 FE2 1.10.3.9 GO:0005737 ... D0VWR8 38297122
    831261 8iri:D (2.25) BS07 BCT 1.10.3.9 GO:0005737 ... D0VWR8 38297122
    831262 8iri:D (2.25) BS08 CLA 1.10.3.9 GO:0005737 ... D0VWR8 38297122
    831263 8iri:D (2.25) BS09 CLA 1.10.3.9 GO:0005737 ... D0VWR8 38297122
    831264 8iri:E (2.25) BS01 HEM ? GO:0005506 ... P12238 38297122
    831265 8iri:F (2.25) BS01 HEM ? GO:0005506 ... P12239 38297122
    831266 8iri:H (2.25) BS01 CLA ? GO:0009523 ... P19052 38297122
    831267 8iri:H (2.25) BS02 CLA ? GO:0009523 ... P19052 38297122
    831268 8iri:H (2.25) BS03 CLA ? GO:0009523 ... P19052 38297122
    831269 8iri:I (2.25) BS01 CLA ? GO:0005737 ... P12240 38297122
    831270 8iri:J (2.25) BS01 MG ? GO:0009523 ... Q7DGD4 38297122
    831271 8iri:K (2.25) BS01 peptide ? GO:0005737 ... P19054 38297122
    831272 8iri:K (2.25) BS02 CLA ? GO:0005737 ... P19054 38297122
    831273 8iri:K (2.25) BS03 CLA ? GO:0005737 ... P19054 38297122
    831274 8iri:O (2.25) BS01 CA ? GO:0009523 ... D0VWR2 38297122
    831275 8iri:V (2.25) BS01 HEC ? GO:0005506 ... P0A387 38297122
    831276 8iri:X (2.25) BS01 CLA ? GO:0009523 ... D0VWR4 38297122
    831277 8iri:Z (2.25) BS01 peptide ? GO:0009523 ... D0VWR5 38297122
    831278 8iri:a (2.25) BS01 OEY 1.10.3.9 GO:0005506 ... P51765 38297122
    831279 8iri:a (2.25) BS02 FE2 1.10.3.9 GO:0005506 ... P51765 38297122
    831280 8iri:a (2.25) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    831281 8iri:a (2.25) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    831282 8iri:a (2.25) BS05 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    831283 8iri:a (2.25) BS06 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    831284 8iri:a (2.25) BS07 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    831285 8iri:a (2.25) BS08 OEX 1.10.3.9 GO:0005506 ... P51765 38297122
    831286 8iri:a (2.25) BS09 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    831287 8iri:a (2.25) BS10 BCT 1.10.3.9 GO:0005506 ... P51765 38297122
    831288 8iri:b (2.25) BS01 CLA ? GO:0009521 ... D0VWR1 38297122
    831289 8iri:b (2.25) BS02 CLA ? GO:0009521 ... D0VWR1 38297122
    831290 8iri:b (2.25) BS03 CLA ? GO:0009521 ... D0VWR1 38297122
    831291 8iri:b (2.25) BS04 CLA ? GO:0009521 ... D0VWR1 38297122
    831292 8iri:b (2.25) BS05 CLA ? GO:0009521 ... D0VWR1 38297122
    831293 8iri:b (2.25) BS06 CLA ? GO:0009521 ... D0VWR1 38297122
    831294 8iri:b (2.25) BS07 CLA ? GO:0009521 ... D0VWR1 38297122
    831295 8iri:b (2.25) BS08 CLA ? GO:0009521 ... D0VWR1 38297122
    831296 8iri:b (2.25) BS09 CLA ? GO:0009521 ... D0VWR1 38297122
    831297 8iri:b (2.25) BS10 CLA ? GO:0009521 ... D0VWR1 38297122
    831298 8iri:b (2.25) BS11 CLA ? GO:0009521 ... D0VWR1 38297122
    831299 8iri:b (2.25) BS12 CLA ? GO:0009521 ... D0VWR1 38297122
    831300 8iri:b (2.25) BS13 CLA ? GO:0009521 ... D0VWR1 38297122
    831301 8iri:b (2.25) BS14 CLA ? GO:0009521 ... D0VWR1 38297122
    831302 8iri:b (2.25) BS15 CLA ? GO:0009521 ... D0VWR1 38297122
    831303 8iri:c (2.25) BS01 OEY ? GO:0005737 ... D0VWR7 38297122
    831304 8iri:c (2.25) BS02 OEX ? GO:0005737 ... D0VWR7 38297122
    831305 8iri:c (2.25) BS03 CLA ? GO:0005737 ... D0VWR7 38297122
    831306 8iri:c (2.25) BS04 CLA ? GO:0005737 ... D0VWR7 38297122
    831307 8iri:c (2.25) BS05 CLA ? GO:0005737 ... D0VWR7 38297122
    831308 8iri:c (2.25) BS06 CLA ? GO:0005737 ... D0VWR7 38297122
    831309 8iri:c (2.25) BS07 CLA ? GO:0005737 ... D0VWR7 38297122
    831310 8iri:c (2.25) BS08 CLA ? GO:0005737 ... D0VWR7 38297122
    831311 8iri:c (2.25) BS09 CLA ? GO:0005737 ... D0VWR7 38297122
    831312 8iri:c (2.25) BS10 CLA ? GO:0005737 ... D0VWR7 38297122
    831313 8iri:c (2.25) BS11 CLA ? GO:0005737 ... D0VWR7 38297122
    831314 8iri:c (2.25) BS12 CLA ? GO:0005737 ... D0VWR7 38297122
    831315 8iri:c (2.25) BS13 CLA ? GO:0005737 ... D0VWR7 38297122
    831316 8iri:c (2.25) BS14 CLA ? GO:0005737 ... D0VWR7 38297122
    831317 8iri:c (2.25) BS15 CLA ? GO:0005737 ... D0VWR7 38297122
    831318 8iri:c (2.25) BS16 CA ? GO:0005737 ... D0VWR7 38297122
    831319 8iri:c (2.25) BS17 CA ? GO:0005737 ... D0VWR7 38297122
    831320 8iri:d (2.25) BS01 FE2 1.10.3.9 GO:0005737 ... D0VWR8 38297122
    831321 8iri:d (2.25) BS02 CLA 1.10.3.9 GO:0005737 ... D0VWR8 38297122
    831322 8iri:d (2.25) BS03 CLA 1.10.3.9 GO:0005737 ... D0VWR8 38297122
    831323 8iri:d (2.25) BS04 PHO 1.10.3.9 GO:0005737 ... D0VWR8 38297122
    831324 8iri:d (2.25) BS05 PHO 1.10.3.9 GO:0005737 ... D0VWR8 38297122
    831325 8iri:d (2.25) BS06 CLA 1.10.3.9 GO:0005737 ... D0VWR8 38297122
    831326 8iri:d (2.25) BS07 BCT 1.10.3.9 GO:0005737 ... D0VWR8 38297122
    831327 8iri:d (2.25) BS08 CLA 1.10.3.9 GO:0005737 ... D0VWR8 38297122
    831328 8iri:d (2.25) BS09 CLA 1.10.3.9 GO:0005737 ... D0VWR8 38297122
    831329 8iri:e (2.25) BS01 HEM ? GO:0005506 ... P12238 38297122
    831330 8iri:f (2.25) BS01 HEM ? GO:0005506 ... P12239 38297122
    831331 8iri:h (2.25) BS01 CLA ? GO:0009523 ... P19052 38297122
    831332 8iri:h (2.25) BS02 CLA ? GO:0009523 ... P19052 38297122
    831333 8iri:h (2.25) BS03 CLA ? GO:0009523 ... P19052 38297122
    831334 8iri:h (2.25) BS04 CLA ? GO:0009523 ... P19052 38297122
    831335 8iri:i (2.25) BS01 CLA ? GO:0005737 ... P12240 38297122
    831336 8iri:j (2.25) BS01 MG ? GO:0009523 ... Q7DGD4 38297122
    831337 8iri:k (2.25) BS01 peptide ? GO:0005737 ... P19054 38297122
    831338 8iri:k (2.25) BS02 CLA ? GO:0005737 ... P19054 38297122
    831339 8iri:k (2.25) BS03 CLA ? GO:0005737 ... P19054 38297122
    831340 8iri:o (2.25) BS01 CA ? GO:0009523 ... D0VWR2 38297122
    831341 8iri:v (2.25) BS01 HEC ? GO:0005506 ... P0A387 38297122
    831342 8iri:x (2.25) BS01 CLA ? GO:0009523 ... D0VWR4 38297122
    831343 8iri:z (2.25) BS01 peptide ? GO:0009523 ... D0VWR5 38297122
    831344 8irk:A (2.35) BS01 PLP 4.4.-.- GO:0016829 ... A0R5M7 38072054
    831345 8irk:A (2.35) BS02 PYR 4.4.-.- GO:0016829 ... A0R5M7 38072054
    831346 8irk:B (2.35) BS01 PLP 4.4.-.- GO:0016829 ... A0R5M7 38072054
    831347 8irk:C (2.35) BS01 PLP 4.4.-.- GO:0016829 ... A0R5M7 38072054
    831348 8irk:D (2.35) BS01 PLP 4.4.-.- GO:0016829 ... A0R5M7 38072054
    831349 8irm:A (2.6) BS01 ADE ? GO:0005345 ... Q9SRK7 38172575
    831350 8irm:B (2.6) BS01 ADE ? GO:0005345 ... Q9SRK7 38172575
    831351 8irn:A (2.7) BS01 EMU ? GO:0005345 ... Q9SRK7 38172575
    831352 8irn:B (2.7) BS01 EMU ? GO:0005345 ... Q9SRK7 38172575
    831353 8iro:A (2.7) BS01 ZEA ? GO:0005345 ... Q9SRK7 38172575
    831354 8iro:B (2.7) BS01 ZEA ? GO:0005345 ... Q9SRK7 38172575
    831355 8irp:A (2.8) BS01 H35 ? GO:0005345 ... Q9SRK7 38172575
    831356 8irp:B (2.8) BS01 H35 ? GO:0005345 ... Q9SRK7 38172575
    831357 8irr:R (3.2) BS01 R5F ? GO:0001588 ... P21728 37221270
    831358 8irr:R (3.2) BS02 CLR ? GO:0001588 ... P21728 37221270
    831359 8irr:R (3.2) BS03 CLR ? GO:0001588 ... P21728 37221270
    831360 8irs:R (3.0) BS01 R5F ? GO:0000139 ... P0ABE7
    P14416
    37221270
    831361 8irt:R (2.7) BS01 R5F ? GO:0001591 ... P0ABE7
    P35462
    37221270
    831362 8iru:R (3.2) BS01 R5F N/A GO:0004930 ... N/A 37221270
    831363 8iru:R (3.2) BS02 CLR N/A GO:0004930 ... N/A 37221270
    831364 8iru:R (3.2) BS03 CLR N/A GO:0004930 ... N/A 37221270
    831365 8iru:R (3.2) BS04 CLR N/A GO:0004930 ... N/A 37221270
    831366 8iru:R (3.2) BS05 CLR N/A GO:0004930 ... N/A 37221270
    831367 8irv:R (3.1) BS01 R5F ? GO:0001588 ... P0ABE7
    P21918
    37221270
    831368 8irv:R (3.1) BS02 CLR ? GO:0001588 ... P0ABE7
    P21918
    37221270
    831369 8irv:R (3.1) BS03 CLR ? GO:0001588 ... P0ABE7
    P21918
    37221270
    831370 8irv:R (3.1) BS04 CLR ? GO:0001588 ... P0ABE7
    P21918
    37221270
    831371 8irv:R (3.1) BS05 CLR ? GO:0001588 ... P0ABE7
    P21918
    37221270
    831372 8irv:R (3.1) BS06 CLR ? GO:0001588 ... P0ABE7
    P21918
    37221270
    831373 8irv:R (3.1) BS07 CLR ? GO:0001588 ... P0ABE7
    P21918
    37221270
    831374 8irv:R (3.1) BS08 CLR ? GO:0001588 ... P0ABE7
    P21918
    37221270
    831375 8iry:A (2.35) BS01 PLP 4.4.-.- GO:0016829 ... A0R5M7 38072054
    831376 8iry:A (2.35) BS02 PYR 4.4.-.- GO:0016829 ... A0R5M7 38072054
    831377 8iry:B (2.35) BS01 PLP 4.4.-.- GO:0016829 ... A0R5M7 38072054
    831378 8iry:C (2.35) BS01 PLP 4.4.-.- GO:0016829 ... A0R5M7 38072054
    831379 8iry:D (2.35) BS01 PLP 4.4.-.- GO:0016829 ... A0R5M7 38072054
    831380 8irz:A (2.86) BS01 PLP 4.4.-.- GO:0016829 ... A0R5M7 38072054
    831381 8irz:B (2.86) BS01 PLP 4.4.-.- GO:0016829 ... A0R5M7 38072054
    831382 8is0:A (3.02) BS01 PLP 4.4.-.- GO:0016829 ... A0R5M7 38072054
    831383 8is0:A (3.02) BS02 DHA 4.4.-.- GO:0016829 ... A0R5M7 38072054
    831384 8is0:B (3.02) BS01 PLP 4.4.-.- GO:0016829 ... A0R5M7 38072054
    831385 8is0:B (3.02) BS02 DHA 4.4.-.- GO:0016829 ... A0R5M7 38072054
    831386 8is4:A (1.9) BS01 URF N/A GO:0016787 ... N/A 37680460
    831387 8is4:A (1.9) BS02 ZN N/A GO:0016787 ... N/A 37680460
    831388 8is4:B (1.9) BS01 URF N/A GO:0016787 ... N/A 37680460
    831389 8is4:B (1.9) BS02 ZN N/A GO:0016787 ... N/A 37680460
    831390 8is5:A (2.1) BS01 ZN N/A GO:0016787 ... N/A 37680460
    831391 8is5:B (2.1) BS01 ZN N/A GO:0016787 ... N/A 37680460
    831392 8is7:A (1.6) BS01 FPS N/A GO:0003824 ... B9UXM0 N/A
    831393 8is7:A (1.6) BS02 FPS N/A GO:0003824 ... B9UXM0 N/A
    831394 8is7:A (1.6) BS03 MG N/A GO:0003824 ... B9UXM0 N/A
    831395 8is7:A (1.6) BS04 MG N/A GO:0003824 ... B9UXM0 N/A
    831396 8is7:A (1.6) BS05 MG N/A GO:0003824 ... B9UXM0 N/A
    831397 8is8:A (2.3) BS01 GST N/A GO:0003824 ... B9UXM0 N/A
    831398 8is8:A (2.3) BS02 GST N/A GO:0003824 ... B9UXM0 N/A
    831399 8is8:A (2.3) BS03 MG N/A GO:0003824 ... B9UXM0 N/A
    831400 8is8:A (2.3) BS04 MG N/A GO:0003824 ... B9UXM0 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).