SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    831201 8iej:G (3.12) BS02 dna ? GO:0000786 ... P04908 37633270
    831202 8iej:H (3.12) BS01 dna ? GO:0000786 ... O60814 37633270
    831203 8iej:K (3.12) BS01 dna ? GO:0000786 ... P68431 37633270
    831204 8iej:K (3.12) BS02 dna ? GO:0000786 ... P68431 37633270
    831205 8iej:L (3.12) BS01 dna ? GO:0003677 ... P62805 37633270
    831206 8iej:L (3.12) BS02 dna ? GO:0003677 ... P62805 37633270
    831207 8iej:M (3.12) BS01 ZN 2.3.2.27 GO:0004842 ... Q5VTR2 37633270
    831208 8iej:M (3.12) BS02 ZN 2.3.2.27 GO:0004842 ... Q5VTR2 37633270
    831209 8iek:P (3.2) BS01 ATP 7.6.2.- GO:0000166 ... Q9NQ11 37031211
    831210 8iem:P (3.35) BS01 MG 7.6.2.- GO:0000166 ... Q9NQ11 37031211
    831211 8iem:P (3.35) BS02 BEF 7.6.2.- GO:0000166 ... Q9NQ11 37031211
    831212 8ien:P (3.25) BS01 MG 7.6.2.- GO:0000166 ... Q9NQ11 37031211
    831213 8ien:P (3.25) BS02 ALF 7.6.2.- GO:0000166 ... Q9NQ11 37031211
    831214 8ieo:P (3.78) BS01 ALF 7.6.2.- GO:0000166 ... Q9NQ11 37031211
    831215 8ieo:P (3.78) BS02 MG 7.6.2.- GO:0000166 ... Q9NQ11 37031211
    831216 8ies:P (3.73) BS01 ALF 7.6.2.- GO:0000166 ... Q9NQ11 37031211
    831217 8ies:P (3.73) BS02 MG 7.6.2.- GO:0000166 ... Q9NQ11 37031211
    831218 8ies:P (3.73) BS03 ADP 7.6.2.- GO:0000166 ... Q9NQ11 37031211
    831219 8iew:A (3.1) BS01 rna N/A N/A N/A N/A
    831220 8iew:A (3.1) BS02 dna N/A N/A N/A N/A
    831221 8iew:A (3.1) BS03 dna N/A N/A N/A N/A
    831222 8iex:A (-1.00) BS01 ZN ? GO:0003700 ... Q9SV15 36868077
    831223 8iey:A (2.0) BS01 FE 2.3.1.234 GO:0002949 ... O66986 39510188
    831224 8if1:A () BS01 peptide ? N/A N/A N/A
    831225 8if1:C () BS01 peptide ? N/A N/A N/A
    831226 8if1:G () BS01 peptide ? N/A N/A N/A
    831227 8if2:A (2.78) BS01 ZN 3.4.17.-
    3.4.17.23
    GO:0006508 ... Q9BYF1 37169744
    831228 8if2:B (2.78) BS01 MAN ? N/A P0DTC2 37169744
    831229 8if3:A (3.23) BS01 8X9 ? N/A P54289 36933823
    831230 8if7:A (2.2) BS01 P1T ? GO:1901605 ... A6YEH3 37405487
    831231 8if8:B (3.1) BS01 CA 2.4.2.46 GO:0005886 ... P9WN03 37252995
    831232 8if8:C (3.1) BS01 CA 2.4.2.46 GO:0005886 ... P9WN03 37252995
    831233 8ifb:0 (2.43) BS01 rna ? GO:0000027 ... P0A7N9 38227611
    831234 8ifb:1 (2.43) BS01 rna ? GO:0002181 ... P0A7P5 38227611
    831235 8ifb:2 (2.43) BS01 rna ? GO:0002181 ... P0A7Q1 38227611
    831236 8ifb:3 (2.43) BS01 rna ? GO:0002181 ... P0A7Q6 38227611
    831237 8ifb:3 (2.43) BS02 ZN ? GO:0002181 ... P0A7Q6 38227611
    831238 8ifb:4 (2.43) BS01 rna ? GO:0002181 ... P0A7M9 38227611
    831239 8ifb:4 (2.43) BS02 rna ? GO:0002181 ... P0A7M9 38227611
    831240 8ifb:4 (2.43) BS03 ZN ? GO:0002181 ... P0A7M9 38227611
    831241 8ifb:B (2.43) BS01 rna ? GO:0000028 ... P0A7V0 38227611
    831242 8ifb:C (2.43) BS01 rna ? GO:0000028 ... P0A7V3 38227611
    831243 8ifb:C (2.43) BS02 MG ? GO:0000028 ... P0A7V3 38227611
    831244 8ifb:D (2.43) BS01 rna ? GO:0000028 ... P0A7V8 38227611
    831245 8ifb:E (2.43) BS01 rna ? GO:0000028 ... P0A7W1 38227611
    831246 8ifb:F (2.43) BS01 rna ? GO:0002181 ... P02358 38227611
    831247 8ifb:G (2.43) BS01 rna ? GO:0000028 ... P02359 38227611
    831248 8ifb:H (2.43) BS01 rna ? GO:0000028 ... P0A7W7 38227611
    831249 8ifb:I (2.43) BS01 rna ? GO:0002181 ... P0A7X3 38227611
    831250 8ifb:I (2.43) BS02 rna ? GO:0002181 ... P0A7X3 38227611
    831251 8ifb:J (2.43) BS01 rna ? GO:0000049 ... P0A7R5 38227611
    831252 8ifb:K (2.43) BS01 rna ? GO:0002181 ... P0A7R9 38227611
    831253 8ifb:L (2.43) BS01 rna ? GO:0000049 ... P0A7S3 38227611
    831254 8ifb:M (2.43) BS01 rna ? GO:0000049 ... P0A7S9 38227611
    831255 8ifb:M (2.43) BS02 MG ? GO:0000049 ... P0A7S9 38227611
    831256 8ifb:N (2.43) BS01 rna ? GO:0000028 ... P0AG59 38227611
    831257 8ifb:O (2.43) BS01 rna ? GO:0000028 ... P0ADZ4 38227611
    831258 8ifb:O (2.43) BS02 rna ? GO:0000028 ... P0ADZ4 38227611
    831259 8ifb:P (2.43) BS01 rna ? GO:0000028 ... P0A7T3 38227611
    831260 8ifb:Q (2.43) BS01 rna ? GO:0000028 ... P0AG63 38227611
    831261 8ifb:R (2.43) BS01 rna ? GO:0002181 ... P0A7T7 38227611
    831262 8ifb:S (2.43) BS01 rna ? GO:0002181 ... P0A7U3 38227611
    831263 8ifb:T (2.43) BS01 rna ? GO:0000028 ... P0A7U7 38227611
    831264 8ifb:U (2.43) BS01 rna ? GO:0000028 ... P68679 38227611
    831265 8ifb:c (2.43) BS01 rna ? GO:0000027 ... P60422 38227611
    831266 8ifb:c (2.43) BS02 MG ? GO:0000027 ... P60422 38227611
    831267 8ifb:c (2.43) BS03 MG ? GO:0000027 ... P60422 38227611
    831268 8ifb:d (2.43) BS01 rna ? GO:0000027 ... P60438 38227611
    831269 8ifb:d (2.43) BS02 MG ? GO:0000027 ... P60438 38227611
    831270 8ifb:d (2.43) BS03 MG ? GO:0000027 ... P60438 38227611
    831271 8ifb:d (2.43) BS04 MG ? GO:0000027 ... P60438 38227611
    831272 8ifb:d (2.43) BS05 MG ? GO:0000027 ... P60438 38227611
    831273 8ifb:e (2.43) BS01 rna ? GO:0001070 ... P60723 38227611
    831274 8ifb:f (2.43) BS01 rna ? GO:0000027 ... P62399 38227611
    831275 8ifb:f (2.43) BS02 rna ? GO:0000027 ... P62399 38227611
    831276 8ifb:f (2.43) BS03 rna ? GO:0000027 ... P62399 38227611
    831277 8ifb:g (2.43) BS01 rna ? GO:0000027 ... P0AG55 38227611
    831278 8ifb:h (2.43) BS01 rna ? GO:0002181 ... P0A7R1 38227611
    831279 8ifb:i (2.43) BS01 rna ? GO:0002181 ... P0AA10 38227611
    831280 8ifb:j (2.43) BS01 rna ? GO:0002181 ... P0ADY3 38227611
    831281 8ifb:j (2.43) BS02 rna ? GO:0002181 ... P0ADY3 38227611
    831282 8ifb:k (2.43) BS01 rna ? GO:0002181 ... P02413 38227611
    831283 8ifb:l (2.43) BS01 rna ? GO:0000027 ... P0ADY7 38227611
    831284 8ifb:l (2.43) BS02 rna ? GO:0000027 ... P0ADY7 38227611
    831285 8ifb:l (2.43) BS03 rna ? GO:0000027 ... P0ADY7 38227611
    831286 8ifb:l (2.43) BS04 MG ? GO:0000027 ... P0ADY7 38227611
    831287 8ifb:m (2.43) BS01 rna ? GO:0000027 ... P0AG44 38227611
    831288 8ifb:n (2.43) BS01 rna ? GO:0002181 ... P0C018 38227611
    831289 8ifb:n (2.43) BS02 rna ? GO:0002181 ... P0C018 38227611
    831290 8ifb:o (2.43) BS01 rna ? GO:0000027 ... P0A7K6 38227611
    831291 8ifb:o (2.43) BS02 rna ? GO:0000027 ... P0A7K6 38227611
    831292 8ifb:p (2.43) BS01 rna ? GO:0000027 ... P0A7L3 38227611
    831293 8ifb:q (2.43) BS01 rna ? GO:0002181 ... P0AG48 38227611
    831294 8ifb:r (2.43) BS01 rna ? GO:0002181 ... P61175 38227611
    831295 8ifb:s (2.43) BS01 rna ? GO:0000027 ... P0ADZ0 38227611
    831296 8ifb:t (2.43) BS01 rna ? GO:0000027 ... P60624 38227611
    831297 8ifb:u (2.43) BS01 rna ? GO:0000027 ... P68919 38227611
    831298 8ifb:v (2.43) BS01 rna ? GO:0000027 ... P0A7L8 38227611
    831299 8ifb:v (2.43) BS02 rna ? GO:0000027 ... P0A7L8 38227611
    831300 8ifb:w (2.43) BS01 rna ? GO:0000027 ... P0A7M2 38227611
    831301 8ifb:x (2.43) BS01 rna ? GO:0000027 ... P0A7M6 38227611
    831302 8ifb:y (2.43) BS01 rna ? GO:0000027 ... P0AG51 38227611
    831303 8ifb:y (2.43) BS02 rna ? GO:0000027 ... P0AG51 38227611
    831304 8ifb:z (2.43) BS01 rna ? GO:0000027 ... P0A7N4 38227611
    831305 8ifb:z (2.43) BS02 MG ? GO:0000027 ... P0A7N4 38227611
    831306 8ifc:0 (2.9) BS01 rna ? GO:0000027 ... P0A7N9 38227611
    831307 8ifc:1 (2.9) BS01 rna ? GO:0002181 ... P0A7P5 38227611
    831308 8ifc:2 (2.9) BS01 rna ? GO:0002181 ... P0A7Q1 38227611
    831309 8ifc:3 (2.9) BS01 rna ? GO:0002181 ... P0A7Q6 38227611
    831310 8ifc:3 (2.9) BS02 ZN ? GO:0002181 ... P0A7Q6 38227611
    831311 8ifc:4 (2.9) BS01 rna ? GO:0002181 ... P0A7M9 38227611
    831312 8ifc:4 (2.9) BS02 rna ? GO:0002181 ... P0A7M9 38227611
    831313 8ifc:4 (2.9) BS03 MG ? GO:0002181 ... P0A7M9 38227611
    831314 8ifc:B (2.9) BS01 rna ? GO:0000028 ... P0A7V0 38227611
    831315 8ifc:C (2.9) BS01 rna ? GO:0000028 ... P0A7V3 38227611
    831316 8ifc:D (2.9) BS01 rna ? GO:0000028 ... P0A7V8 38227611
    831317 8ifc:E (2.9) BS01 rna ? GO:0000028 ... P0A7W1 38227611
    831318 8ifc:F (2.9) BS01 rna ? GO:0002181 ... P02358 38227611
    831319 8ifc:G (2.9) BS01 rna ? GO:0000028 ... P02359 38227611
    831320 8ifc:H (2.9) BS01 rna ? GO:0000028 ... P0A7W7 38227611
    831321 8ifc:I (2.9) BS01 rna ? GO:0002181 ... P0A7X3 38227611
    831322 8ifc:I (2.9) BS02 rna ? GO:0002181 ... P0A7X3 38227611
    831323 8ifc:J (2.9) BS01 rna ? GO:0000049 ... P0A7R5 38227611
    831324 8ifc:K (2.9) BS01 rna ? GO:0002181 ... P0A7R9 38227611
    831325 8ifc:L (2.9) BS01 rna ? GO:0000049 ... P0A7S3 38227611
    831326 8ifc:M (2.9) BS01 rna ? GO:0000049 ... P0A7S9 38227611
    831327 8ifc:M (2.9) BS02 rna ? GO:0000049 ... P0A7S9 38227611
    831328 8ifc:M (2.9) BS03 MG ? GO:0000049 ... P0A7S9 38227611
    831329 8ifc:N (2.9) BS01 rna ? GO:0000028 ... P0AG59 38227611
    831330 8ifc:O (2.9) BS01 rna ? GO:0000028 ... P0ADZ4 38227611
    831331 8ifc:O (2.9) BS02 rna ? GO:0000028 ... P0ADZ4 38227611
    831332 8ifc:P (2.9) BS01 rna ? GO:0000028 ... P0A7T3 38227611
    831333 8ifc:Q (2.9) BS01 rna ? GO:0000028 ... P0AG63 38227611
    831334 8ifc:R (2.9) BS01 rna ? GO:0002181 ... P0A7T7 38227611
    831335 8ifc:S (2.9) BS01 rna ? GO:0002181 ... P0A7U3 38227611
    831336 8ifc:S (2.9) BS02 MG ? GO:0002181 ... P0A7U3 38227611
    831337 8ifc:T (2.9) BS01 rna ? GO:0000028 ... P0A7U7 38227611
    831338 8ifc:U (2.9) BS01 rna ? GO:0000028 ... P68679 38227611
    831339 8ifc:c (2.9) BS01 rna ? GO:0000027 ... P60422 38227611
    831340 8ifc:c (2.9) BS02 MG ? GO:0000027 ... P60422 38227611
    831341 8ifc:d (2.9) BS01 rna ? GO:0000027 ... P60438 38227611
    831342 8ifc:d (2.9) BS02 MG ? GO:0000027 ... P60438 38227611
    831343 8ifc:d (2.9) BS03 MG ? GO:0000027 ... P60438 38227611
    831344 8ifc:e (2.9) BS01 rna ? GO:0001070 ... P60723 38227611
    831345 8ifc:f (2.9) BS01 rna ? GO:0000027 ... P62399 38227611
    831346 8ifc:f (2.9) BS02 rna ? GO:0000027 ... P62399 38227611
    831347 8ifc:f (2.9) BS03 rna ? GO:0000027 ... P62399 38227611
    831348 8ifc:g (2.9) BS01 rna ? GO:0000027 ... P0AG55 38227611
    831349 8ifc:h (2.9) BS01 rna ? GO:0002181 ... P0A7R1 38227611
    831350 8ifc:i (2.9) BS01 rna ? GO:0002181 ... P0AA10 38227611
    831351 8ifc:j (2.9) BS01 rna ? GO:0002181 ... P0ADY3 38227611
    831352 8ifc:j (2.9) BS02 rna ? GO:0002181 ... P0ADY3 38227611
    831353 8ifc:k (2.9) BS01 rna ? GO:0002181 ... P02413 38227611
    831354 8ifc:l (2.9) BS01 rna ? GO:0000027 ... P0ADY7 38227611
    831355 8ifc:l (2.9) BS02 rna ? GO:0000027 ... P0ADY7 38227611
    831356 8ifc:l (2.9) BS03 rna ? GO:0000027 ... P0ADY7 38227611
    831357 8ifc:m (2.9) BS01 rna ? GO:0000027 ... P0AG44 38227611
    831358 8ifc:n (2.9) BS01 rna ? GO:0002181 ... P0C018 38227611
    831359 8ifc:n (2.9) BS02 rna ? GO:0002181 ... P0C018 38227611
    831360 8ifc:o (2.9) BS01 rna ? GO:0000027 ... P0A7K6 38227611
    831361 8ifc:o (2.9) BS02 rna ? GO:0000027 ... P0A7K6 38227611
    831362 8ifc:p (2.9) BS01 rna ? GO:0000027 ... P0A7L3 38227611
    831363 8ifc:q (2.9) BS01 rna ? GO:0002181 ... P0AG48 38227611
    831364 8ifc:r (2.9) BS01 rna ? GO:0002181 ... P61175 38227611
    831365 8ifc:s (2.9) BS01 rna ? GO:0000027 ... P0ADZ0 38227611
    831366 8ifc:t (2.9) BS01 rna ? GO:0000027 ... P60624 38227611
    831367 8ifc:u (2.9) BS01 rna ? GO:0000027 ... P68919 38227611
    831368 8ifc:v (2.9) BS01 rna ? GO:0000027 ... P0A7L8 38227611
    831369 8ifc:v (2.9) BS02 rna ? GO:0000027 ... P0A7L8 38227611
    831370 8ifc:w (2.9) BS01 rna ? GO:0000027 ... P0A7M2 38227611
    831371 8ifc:x (2.9) BS01 rna ? GO:0000027 ... P0A7M6 38227611
    831372 8ifc:y (2.9) BS01 rna ? GO:0000027 ... P0AG51 38227611
    831373 8ifc:z (2.9) BS01 rna ? GO:0000027 ... P0A7N4 38227611
    831374 8ifd:1D (2.59) BS01 rna ? GO:0002181 ... P62917 38227611
    831375 8ifd:1D (2.59) BS02 MG ? GO:0002181 ... P62917 38227611
    831376 8ifd:1E (2.59) BS01 rna ? GO:0002181 ... P39023 38227611
    831377 8ifd:1E (2.59) BS02 MG ? GO:0002181 ... P39023 38227611
    831378 8ifd:1F (2.59) BS01 rna ? GO:0002181 ... P36578 38227611
    831379 8ifd:1F (2.59) BS02 rna ? GO:0002181 ... P36578 38227611
    831380 8ifd:1G (2.59) BS01 rna ? GO:0000027 ... P46777 38227611
    831381 8ifd:1G (2.59) BS02 rna ? GO:0000027 ... P46777 38227611
    831382 8ifd:1H (2.59) BS01 rna ? GO:0002181 ... Q02878 38227611
    831383 8ifd:20 (2.59) BS01 rna ? GO:0000028 ... P39019 38227611
    831384 8ifd:21 (2.59) BS01 rna ? GO:0002181 ... P60866 38227611
    831385 8ifd:2A (2.59) BS01 rna ? GO:0000463 ... P18124 38227611
    831386 8ifd:2A (2.59) BS02 rna ? GO:0000463 ... P18124 38227611
    831387 8ifd:2B (2.59) BS01 rna ? GO:0000470 ... P62424 38227611
    831388 8ifd:2B (2.59) BS02 rna ? GO:0000470 ... P62424 38227611
    831389 8ifd:2C (2.59) BS01 rna ? GO:0002181 ... P32969 38227611
    831390 8ifd:2D (2.59) BS01 rna ? GO:0000027 ... Q96L21 38227611
    831391 8ifd:2D (2.59) BS02 rna ? GO:0000027 ... Q96L21 38227611
    831392 8ifd:2E (2.59) BS01 rna ? GO:0000027 ... P62913 38227611
    831393 8ifd:2E (2.59) BS02 rna ? GO:0000027 ... P62913 38227611
    831394 8ifd:2F (2.59) BS01 rna ? GO:0002181 ... P26373 38227611
    831395 8ifd:2F (2.59) BS02 rna ? GO:0002181 ... P26373 38227611
    831396 8ifd:2G (2.59) BS01 rna ? GO:0002181 ... P50914 38227611
    831397 8ifd:2H (2.59) BS01 rna ? GO:0002181 ... P61313 38227611
    831398 8ifd:2H (2.59) BS02 rna ? GO:0002181 ... P61313 38227611
    831399 8ifd:2I (2.59) BS01 rna ? GO:0002181 ... P40429 38227611
    831400 8ifd:2J (2.59) BS01 rna ? GO:0002181 ... P18621 38227611

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).