SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    831401 8ifd:2J (2.59) BS02 rna ? GO:0002181 ... P18621 38227611
    831402 8ifd:2K (2.59) BS01 rna ? GO:0002181 ... Q07020 38227611
    831403 8ifd:2L (2.59) BS01 rna ? GO:0002181 ... P84098 38227611
    831404 8ifd:2L (2.59) BS02 rna ? GO:0002181 ... P84098 38227611
    831405 8ifd:2M (2.59) BS01 rna ? GO:0002181 ... Q02543 38227611
    831406 8ifd:2M (2.59) BS02 rna ? GO:0002181 ... Q02543 38227611
    831407 8ifd:2N (2.59) BS01 rna ? GO:0001650 ... P46778 38227611
    831408 8ifd:2N (2.59) BS02 rna ? GO:0001650 ... P46778 38227611
    831409 8ifd:2O (2.59) BS01 rna ? GO:0002181 ... P35268 38227611
    831410 8ifd:2P (2.59) BS01 rna ? GO:0000122 ... P62829 38227611
    831411 8ifd:2P (2.59) BS02 MG ? GO:0000122 ... P62829 38227611
    831412 8ifd:2Q (2.59) BS01 rna ? GO:0002181 ... P83731 38227611
    831413 8ifd:2Q (2.59) BS02 rna ? GO:0002181 ... P83731 38227611
    831414 8ifd:2R (2.59) BS01 rna ? GO:0002181 ... P62750 38227611
    831415 8ifd:2R (2.59) BS02 rna ? GO:0002181 ... P62750 38227611
    831416 8ifd:2S (2.59) BS01 rna ? GO:0002181 ... P61254 38227611
    831417 8ifd:2S (2.59) BS02 rna ? GO:0002181 ... P61254 38227611
    831418 8ifd:2T (2.59) BS01 rna ? GO:0002181 ... P61353 38227611
    831419 8ifd:2U (2.59) BS01 rna ? GO:0002181 ... P46776 38227611
    831420 8ifd:2V (2.59) BS01 rna ? GO:0002181 ... P47914 38227611
    831421 8ifd:2V (2.59) BS02 MG ? GO:0002181 ... P47914 38227611
    831422 8ifd:2W (2.59) BS01 rna ? GO:0002181 ... P62888 38227611
    831423 8ifd:2X (2.59) BS01 rna ? GO:0002181 ... P62899 38227611
    831424 8ifd:2Y (2.59) BS01 rna ? GO:0002181 ... P62910 38227611
    831425 8ifd:2Y (2.59) BS02 MG ? GO:0002181 ... P62910 38227611
    831426 8ifd:2Y (2.59) BS03 MG ? GO:0002181 ... P62910 38227611
    831427 8ifd:2Z (2.59) BS01 rna ? GO:0002181 ... P18077 38227611
    831428 8ifd:2Z (2.59) BS02 MG ? GO:0002181 ... P18077 38227611
    831429 8ifd:2a (2.59) BS01 rna ? GO:0002181 ... P49207 38227611
    831430 8ifd:2a (2.59) BS02 MG ? GO:0002181 ... P49207 38227611
    831431 8ifd:2b (2.59) BS01 rna ? GO:0000463 ... P42766 38227611
    831432 8ifd:2b (2.59) BS02 rna ? GO:0000463 ... P42766 38227611
    831433 8ifd:2c (2.59) BS01 rna ? GO:0002181 ... Q9Y3U8 38227611
    831434 8ifd:2d (2.59) BS01 rna ? GO:0000448 ... P61927 38227611
    831435 8ifd:2d (2.59) BS02 rna ? GO:0000448 ... P61927 38227611
    831436 8ifd:2d (2.59) BS03 MG ? GO:0000448 ... P61927 38227611
    831437 8ifd:2d (2.59) BS04 ZN ? GO:0000448 ... P61927 38227611
    831438 8ifd:2e (2.59) BS01 rna ? GO:0002181 ... P63173 38227611
    831439 8ifd:2f (2.59) BS01 rna ? GO:0002181 ... P62891 38227611
    831440 8ifd:2f (2.59) BS02 rna ? GO:0002181 ... P62891 38227611
    831441 8ifd:2g (2.59) BS01 rna ? GO:0002181 ... P62987 38227611
    831442 8ifd:2g (2.59) BS02 ZN ? GO:0002181 ... P62987 38227611
    831443 8ifd:2i (2.59) BS01 rna ? GO:0002181 ... P83881 38227611
    831444 8ifd:2i (2.59) BS02 84D ? GO:0002181 ... P83881 38227611
    831445 8ifd:2j (2.59) BS01 rna ? GO:0002181 ... P61513 38227611
    831446 8ifd:2j (2.59) BS02 ZN ? GO:0002181 ... P61513 38227611
    831447 8ifd:2k (2.59) BS01 rna ? GO:0002181 ... P46779 38227611
    831448 8ifd:2l (2.59) BS01 rna ? GO:0002181 ... P62906 38227611
    831449 8ifd:2n (2.59) BS01 rna ? GO:0000028 ... P08865 38227611
    831450 8ifd:2o (2.59) BS01 rna ? GO:0002181 ... P61247 38227611
    831451 8ifd:2p (2.59) BS01 rna 4.2.99.18 GO:0001228 ... P23396 38227611
    831452 8ifd:2q (2.59) BS01 rna ? GO:0002181 ... P62701 38227611
    831453 8ifd:2r (2.59) BS01 rna ? GO:0002181 ... P46782 38227611
    831454 8ifd:2s (2.59) BS01 rna ? GO:0002181 ... P62081 38227611
    831455 8ifd:2t (2.59) BS01 rna ? GO:0002181 ... P62241 38227611
    831456 8ifd:2t (2.59) BS02 rna ? GO:0002181 ... P62241 38227611
    831457 8ifd:2u (2.59) BS01 rna ? GO:0002181 ... P46783 38227611
    831458 8ifd:2v (2.59) BS01 rna ? GO:0002181 ... P62280 38227611
    831459 8ifd:2w (2.59) BS01 rna ? GO:0000056 ... P62841 38227611
    831460 8ifd:2x (2.59) BS01 rna ? GO:0000462 ... P62249 38227611
    831461 8ifd:2y (2.59) BS01 rna ? GO:0002181 ... P08708 38227611
    831462 8ifd:2z (2.59) BS01 rna ? GO:0002181 ... P62269 38227611
    831463 8ifd:3B (2.59) BS01 rna ? GO:0002181 ... P62266 38227611
    831464 8ifd:3C (2.59) BS01 rna ? GO:0002181 ... P62854 38227611
    831465 8ifd:3C (2.59) BS02 ZN ? GO:0002181 ... P62854 38227611
    831466 8ifd:3D (2.59) BS01 rna ? GO:0000028 ... P62857 38227611
    831467 8ifd:3E (2.59) BS01 rna ? GO:0002181 ... P62273 38227611
    831468 8ifd:3F (2.59) BS01 rna ? GO:0001891 ... P63244 38227611
    831469 8ifd:3G (2.59) BS01 rna ? GO:0002181 ... P15880 38227611
    831470 8ifd:3H (2.59) BS01 rna ? GO:0002181 ... P62753 38227611
    831471 8ifd:3I (2.59) BS01 rna ? GO:0002181 ... P46781 38227611
    831472 8ifd:3J (2.59) BS01 rna ? GO:0002181 ... P25398 38227611
    831473 8ifd:3K (2.59) BS01 rna ? GO:0000462 ... P62277 38227611
    831474 8ifd:3K (2.59) BS02 rna ? GO:0000462 ... P62277 38227611
    831475 8ifd:3L (2.59) BS01 rna ? GO:0000028 ... P62263 38227611
    831476 8ifd:3M (2.59) BS01 rna ? GO:0002181 ... P62244 38227611
    831477 8ifd:3N (2.59) BS01 rna ? GO:0002181 ... P62847 38227611
    831478 8ifd:3O (2.59) BS01 rna ? GO:0002181 ... P62851 38227611
    831479 8ifd:3P (2.59) BS01 rna ? GO:0002181 ... P42677 38227611
    831480 8ifd:3Q (2.59) BS01 rna ? GO:0003735 ... P62861 38227611
    831481 8ifd:3R (2.59) BS01 rna ? GO:0002181 ... P62979 38227611
    831482 8ife:1D (2.57) BS01 rna ? GO:0002181 ... P62917 38227611
    831483 8ife:1D (2.57) BS02 MG ? GO:0002181 ... P62917 38227611
    831484 8ife:1E (2.57) BS01 rna ? GO:0002181 ... P39023 38227611
    831485 8ife:1E (2.57) BS02 MG ? GO:0002181 ... P39023 38227611
    831486 8ife:1F (2.57) BS01 rna ? GO:0002181 ... P36578 38227611
    831487 8ife:1F (2.57) BS02 rna ? GO:0002181 ... P36578 38227611
    831488 8ife:1G (2.57) BS01 rna ? GO:0000027 ... P46777 38227611
    831489 8ife:1G (2.57) BS02 rna ? GO:0000027 ... P46777 38227611
    831490 8ife:1H (2.57) BS01 rna ? GO:0002181 ... Q02878 38227611
    831491 8ife:20 (2.57) BS01 rna ? GO:0000028 ... P39019 38227611
    831492 8ife:21 (2.57) BS01 rna ? GO:0002181 ... P60866 38227611
    831493 8ife:2A (2.57) BS01 rna ? GO:0000463 ... P18124 38227611
    831494 8ife:2A (2.57) BS02 rna ? GO:0000463 ... P18124 38227611
    831495 8ife:2B (2.57) BS01 rna ? GO:0000470 ... P62424 38227611
    831496 8ife:2B (2.57) BS02 rna ? GO:0000470 ... P62424 38227611
    831497 8ife:2C (2.57) BS01 rna ? GO:0002181 ... P32969 38227611
    831498 8ife:2D (2.57) BS01 rna ? GO:0000027 ... Q96L21 38227611
    831499 8ife:2D (2.57) BS02 rna ? GO:0000027 ... Q96L21 38227611
    831500 8ife:2D (2.57) BS03 84G ? GO:0000027 ... Q96L21 38227611
    831501 8ife:2E (2.57) BS01 rna ? GO:0000027 ... P62913 38227611
    831502 8ife:2E (2.57) BS02 rna ? GO:0000027 ... P62913 38227611
    831503 8ife:2F (2.57) BS01 rna ? GO:0002181 ... P26373 38227611
    831504 8ife:2F (2.57) BS02 rna ? GO:0002181 ... P26373 38227611
    831505 8ife:2G (2.57) BS01 rna ? GO:0002181 ... P50914 38227611
    831506 8ife:2H (2.57) BS01 rna ? GO:0002181 ... P61313 38227611
    831507 8ife:2H (2.57) BS02 rna ? GO:0002181 ... P61313 38227611
    831508 8ife:2I (2.57) BS01 rna ? GO:0002181 ... P40429 38227611
    831509 8ife:2J (2.57) BS01 rna ? GO:0002181 ... P18621 38227611
    831510 8ife:2J (2.57) BS02 rna ? GO:0002181 ... P18621 38227611
    831511 8ife:2K (2.57) BS01 rna ? GO:0002181 ... Q07020 38227611
    831512 8ife:2L (2.57) BS01 rna ? GO:0002181 ... P84098 38227611
    831513 8ife:2L (2.57) BS02 rna ? GO:0002181 ... P84098 38227611
    831514 8ife:2M (2.57) BS01 rna ? GO:0002181 ... Q02543 38227611
    831515 8ife:2M (2.57) BS02 rna ? GO:0002181 ... Q02543 38227611
    831516 8ife:2M (2.57) BS03 MG ? GO:0002181 ... Q02543 38227611
    831517 8ife:2N (2.57) BS01 rna ? GO:0001650 ... P46778 38227611
    831518 8ife:2N (2.57) BS02 rna ? GO:0001650 ... P46778 38227611
    831519 8ife:2O (2.57) BS01 rna ? GO:0002181 ... P35268 38227611
    831520 8ife:2P (2.57) BS01 rna ? GO:0000122 ... P62829 38227611
    831521 8ife:2P (2.57) BS02 MG ? GO:0000122 ... P62829 38227611
    831522 8ife:2Q (2.57) BS01 rna ? GO:0002181 ... P83731 38227611
    831523 8ife:2Q (2.57) BS02 rna ? GO:0002181 ... P83731 38227611
    831524 8ife:2R (2.57) BS01 rna ? GO:0002181 ... P62750 38227611
    831525 8ife:2R (2.57) BS02 rna ? GO:0002181 ... P62750 38227611
    831526 8ife:2S (2.57) BS01 rna ? GO:0002181 ... P61254 38227611
    831527 8ife:2S (2.57) BS02 rna ? GO:0002181 ... P61254 38227611
    831528 8ife:2T (2.57) BS01 rna ? GO:0002181 ... P61353 38227611
    831529 8ife:2U (2.57) BS01 rna ? GO:0002181 ... P46776 38227611
    831530 8ife:2V (2.57) BS01 rna ? GO:0002181 ... P47914 38227611
    831531 8ife:2W (2.57) BS01 rna ? GO:0002181 ... P62888 38227611
    831532 8ife:2X (2.57) BS01 rna ? GO:0002181 ... P62899 38227611
    831533 8ife:2Y (2.57) BS01 rna ? GO:0002181 ... P62910 38227611
    831534 8ife:2Y (2.57) BS02 84G ? GO:0002181 ... P62910 38227611
    831535 8ife:2Y (2.57) BS03 MG ? GO:0002181 ... P62910 38227611
    831536 8ife:2Y (2.57) BS04 MG ? GO:0002181 ... P62910 38227611
    831537 8ife:2Z (2.57) BS01 rna ? GO:0002181 ... P18077 38227611
    831538 8ife:2Z (2.57) BS02 MG ? GO:0002181 ... P18077 38227611
    831539 8ife:2a (2.57) BS01 rna ? GO:0002181 ... P49207 38227611
    831540 8ife:2a (2.57) BS02 MG ? GO:0002181 ... P49207 38227611
    831541 8ife:2b (2.57) BS01 rna ? GO:0000463 ... P42766 38227611
    831542 8ife:2b (2.57) BS02 rna ? GO:0000463 ... P42766 38227611
    831543 8ife:2c (2.57) BS01 rna ? GO:0002181 ... Q9Y3U8 38227611
    831544 8ife:2d (2.57) BS01 rna ? GO:0000448 ... P61927 38227611
    831545 8ife:2d (2.57) BS02 rna ? GO:0000448 ... P61927 38227611
    831546 8ife:2d (2.57) BS03 ZN ? GO:0000448 ... P61927 38227611
    831547 8ife:2e (2.57) BS01 rna ? GO:0002181 ... P63173 38227611
    831548 8ife:2f (2.57) BS01 rna ? GO:0002181 ... P62891 38227611
    831549 8ife:2f (2.57) BS02 rna ? GO:0002181 ... P62891 38227611
    831550 8ife:2g (2.57) BS01 rna ? GO:0002181 ... P62987 38227611
    831551 8ife:2g (2.57) BS02 ZN ? GO:0002181 ... P62987 38227611
    831552 8ife:2i (2.57) BS01 rna ? GO:0002181 ... P83881 38227611
    831553 8ife:2i (2.57) BS02 84G ? GO:0002181 ... P83881 38227611
    831554 8ife:2i (2.57) BS03 ZN ? GO:0002181 ... P83881 38227611
    831555 8ife:2j (2.57) BS01 rna ? GO:0002181 ... P61513 38227611
    831556 8ife:2j (2.57) BS02 ZN ? GO:0002181 ... P61513 38227611
    831557 8ife:2k (2.57) BS01 rna ? GO:0002181 ... P46779 38227611
    831558 8ife:2l (2.57) BS01 rna ? GO:0002181 ... P62906 38227611
    831559 8ife:2n (2.57) BS01 rna ? GO:0000028 ... P08865 38227611
    831560 8ife:2o (2.57) BS01 rna ? GO:0002181 ... P61247 38227611
    831561 8ife:2p (2.57) BS01 rna 4.2.99.18 GO:0001228 ... P23396 38227611
    831562 8ife:2q (2.57) BS01 rna ? GO:0002181 ... P62701 38227611
    831563 8ife:2r (2.57) BS01 rna ? GO:0002181 ... P46782 38227611
    831564 8ife:2s (2.57) BS01 rna ? GO:0002181 ... P62081 38227611
    831565 8ife:2t (2.57) BS01 rna ? GO:0002181 ... P62241 38227611
    831566 8ife:2t (2.57) BS02 rna ? GO:0002181 ... P62241 38227611
    831567 8ife:2u (2.57) BS01 rna ? GO:0002181 ... P46783 38227611
    831568 8ife:2v (2.57) BS01 rna ? GO:0002181 ... P62280 38227611
    831569 8ife:2w (2.57) BS01 rna ? GO:0000056 ... P62841 38227611
    831570 8ife:2x (2.57) BS01 rna ? GO:0000462 ... P62249 38227611
    831571 8ife:2y (2.57) BS01 rna ? GO:0002181 ... P08708 38227611
    831572 8ife:2z (2.57) BS01 rna ? GO:0002181 ... P62269 38227611
    831573 8ife:2z (2.57) BS02 rna ? GO:0002181 ... P62269 38227611
    831574 8ife:3B (2.57) BS01 rna ? GO:0002181 ... P62266 38227611
    831575 8ife:3C (2.57) BS01 rna ? GO:0002181 ... P62854 38227611
    831576 8ife:3C (2.57) BS02 ZN ? GO:0002181 ... P62854 38227611
    831577 8ife:3D (2.57) BS01 rna ? GO:0000028 ... P62857 38227611
    831578 8ife:3E (2.57) BS01 rna ? GO:0002181 ... P62273 38227611
    831579 8ife:3E (2.57) BS02 ZN ? GO:0002181 ... P62273 38227611
    831580 8ife:3F (2.57) BS01 rna ? GO:0001891 ... P63244 38227611
    831581 8ife:3G (2.57) BS01 rna ? GO:0002181 ... P15880 38227611
    831582 8ife:3H (2.57) BS01 rna ? GO:0002181 ... P62753 38227611
    831583 8ife:3I (2.57) BS01 rna ? GO:0002181 ... P46781 38227611
    831584 8ife:3J (2.57) BS01 rna ? GO:0002181 ... P25398 38227611
    831585 8ife:3K (2.57) BS01 rna ? GO:0000462 ... P62277 38227611
    831586 8ife:3K (2.57) BS02 rna ? GO:0000462 ... P62277 38227611
    831587 8ife:3L (2.57) BS01 rna ? GO:0000028 ... P62263 38227611
    831588 8ife:3L (2.57) BS02 MG ? GO:0000028 ... P62263 38227611
    831589 8ife:3M (2.57) BS01 rna ? GO:0002181 ... P62244 38227611
    831590 8ife:3N (2.57) BS01 rna ? GO:0002181 ... P62847 38227611
    831591 8ife:3O (2.57) BS01 rna ? GO:0002181 ... P62851 38227611
    831592 8ife:3P (2.57) BS01 rna ? GO:0002181 ... P42677 38227611
    831593 8ife:3Q (2.57) BS01 rna ? GO:0003735 ... P62861 38227611
    831594 8ife:3R (2.57) BS01 rna ? GO:0002181 ... P62979 38227611
    831595 8iff:A (3.1) BS01 O6E ? GO:0000155 ... P14712 37402899
    831596 8iff:B (3.1) BS01 O6E ? GO:0000155 ... P14712 37402899
    831597 8ifg:C (3.2) BS01 ZN 3.5.1.98 GO:0000122 ... O59702 37459529
    831598 8ifg:P (3.2) BS01 ZN ? GO:0000122 ... Q09698 37459529
    831599 8ifg:P (3.2) BS02 ZN ? GO:0000122 ... Q09698 37459529
    831600 8ifk:A (2.54) BS01 rna ? GO:0007165 ... A0A1I7NFG5 37932528

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).