SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    831401 8is8:A (2.3) BS05 MG N/A GO:0003824 ... B9UXM0 N/A
    831402 8is9:A (1.59) BS01 FPS N/A GO:0003824 ... B9UXM0 N/A
    831403 8is9:A (1.59) BS02 MG N/A GO:0003824 ... B9UXM0 N/A
    831404 8is9:A (1.59) BS03 MG N/A GO:0003824 ... B9UXM0 N/A
    831405 8is9:A (1.59) BS04 MG N/A GO:0003824 ... B9UXM0 N/A
    831406 8isa:A (1.59) BS01 GST N/A GO:0003824 ... B9UXM0 N/A
    831407 8isj:A (3.0) BS01 O6E ? GO:0000155 ... P14712 37491602
    831408 8isj:B (3.0) BS01 O6E ? GO:0000155 ... P14712 37491602
    831409 8isk:A (3.3) BS01 O6E ? GO:0000155 ... Q6XFQ4 37491602
    831410 8isk:B (3.3) BS01 O6E ? GO:0000155 ... Q6XFQ4 37491602
    831411 8ism:A (2.76) BS01 ZJZ ? GO:0003677 ... P02768 N/A
    831412 8isn:A (2.48) BS01 peptide ? N/A D9UAY1 37661929
    831413 8isn:D (2.48) BS01 peptide ? N/A D9UAY1 37661929
    831414 8isp:A (2.11) BS01 Q53 3.5.2.6 GO:0008800 ... A0A126NGE0 38588869
    831415 8isq:A (2.24) BS01 ZZ7 3.5.2.6 GO:0008800 ... A0A126NGE0 38588869
    831416 8isr:A (2.09) BS01 Q6R 3.5.2.6 GO:0008800 ... A0A126NGE0 38588869
    831417 8isr:B (2.09) BS01 Q6R 3.5.2.6 GO:0008800 ... A0A126NGE0 38588869
    831418 8iss:B (3.19) BS01 rna 4.6.1.16 GO:0000213 ... Q8NCE0 37770519
    831419 8iss:C (3.19) BS01 rna 4.6.1.16 GO:0000213 ... Q9BSV6 37770519
    831420 8iss:D (3.19) BS01 rna ? GO:0000214 ... Q7Z6J9 37770519
    831421 8isz:A (3.27) BS01 dna ? GO:0003676 ... A0A1I7NFD7 37783228
    831422 8isz:A (3.27) BS02 rna ? GO:0003676 ... A0A1I7NFD7 37783228
    831423 8isz:B (3.27) BS01 dna ? GO:0007165 ... A0A1I7NFG5 37783228
    831424 8isz:B (3.27) BS02 rna ? GO:0007165 ... A0A1I7NFG5 37783228
    831425 8it0:A (3.5) BS01 rna ? GO:0003676 ... A0A1I7NFD7 37783228
    831426 8it0:B (3.5) BS01 dna ? GO:0007165 ... A0A1I7NFG5 37783228
    831427 8it0:B (3.5) BS02 rna ? GO:0007165 ... A0A1I7NFG5 37783228
    831428 8it0:E (3.5) BS01 dna ? GO:0003676 ... A0A1I7NFD7 37783228
    831429 8it0:E (3.5) BS02 rna ? GO:0003676 ... A0A1I7NFD7 37783228
    831430 8it0:F (3.5) BS01 dna ? GO:0007165 ... A0A1I7NFG5 37783228
    831431 8it0:F (3.5) BS02 rna ? GO:0007165 ... A0A1I7NFG5 37783228
    831432 8it1:A (3.41) BS01 dna ? GO:0003676 ... A0A1I7NFD7 37783228
    831433 8it1:A (3.41) BS02 rna ? GO:0003676 ... A0A1I7NFD7 37783228
    831434 8it1:B (3.41) BS01 dna ? GO:0007165 ... A0A1I7NFG5 37783228
    831435 8it1:B (3.41) BS02 rna ? GO:0007165 ... A0A1I7NFG5 37783228
    831436 8it1:E (3.41) BS01 dna ? GO:0003676 ... A0A1I7NFD7 37783228
    831437 8it1:E (3.41) BS02 rna ? GO:0003676 ... A0A1I7NFD7 37783228
    831438 8it1:F (3.41) BS01 dna ? GO:0007165 ... A0A1I7NFG5 37783228
    831439 8it1:F (3.41) BS02 rna ? GO:0007165 ... A0A1I7NFG5 37783228
    831440 8it1:I (3.41) BS01 dna ? GO:0003676 ... A0A1I7NFD7 37783228
    831441 8it1:I (3.41) BS02 rna ? GO:0003676 ... A0A1I7NFD7 37783228
    831442 8it1:J (3.41) BS01 dna ? GO:0007165 ... A0A1I7NFG5 37783228
    831443 8it1:J (3.41) BS02 rna ? GO:0007165 ... A0A1I7NFG5 37783228
    831444 8it1:M (3.41) BS01 dna ? GO:0003676 ... A0A1I7NFD7 37783228
    831445 8it1:M (3.41) BS02 rna ? GO:0003676 ... A0A1I7NFD7 37783228
    831446 8it1:N (3.41) BS01 dna ? GO:0007165 ... A0A1I7NFG5 37783228
    831447 8it1:N (3.41) BS02 rna ? GO:0007165 ... A0A1I7NFG5 37783228
    831448 8it4:A (2.4) BS01 SKU 5.4.2.11
    5.4.2.4
    GO:0003824 ... P18669 N/A
    831449 8it4:B (2.4) BS01 SKU 5.4.2.11
    5.4.2.4
    GO:0003824 ... P18669 N/A
    831450 8it5:C (2.2) BS01 QAI 5.4.2.11
    5.4.2.4
    GO:0003824 ... P18669 N/A
    831451 8it6:C (2.55) BS01 Q90 5.4.2.11
    5.4.2.4
    GO:0003824 ... P18669 N/A
    831452 8it7:C (2.8) BS01 Q9F 5.4.2.11
    5.4.2.4
    GO:0003824 ... P18669 N/A
    831453 8it8:C (1.95) BS01 Q9L 5.4.2.11
    5.4.2.4
    GO:0003824 ... P18669 N/A
    831454 8it9:A (2.14) BS01 ZL6 1.14.11.-
    1.14.11.53
    GO:0001659 ... Q9C0B1 37418628
    831455 8it9:A (2.14) BS02 AKG 1.14.11.-
    1.14.11.53
    GO:0001659 ... Q9C0B1 37418628
    831456 8ita:A (2.5) BS01 R0U N/A GO:0008194 ... N/A 37581303
    831457 8ita:A (2.5) BS02 UDP N/A GO:0008194 ... N/A 37581303
    831458 8itb:C (2.38) BS01 Q9R 5.4.2.11
    5.4.2.4
    GO:0003824 ... P18669 N/A
    831459 8itb:C (2.38) BS02 Q9R 5.4.2.11
    5.4.2.4
    GO:0003824 ... P18669 N/A
    831460 8itc:C (1.88) BS01 QA0 5.4.2.11
    5.4.2.4
    GO:0003824 ... P18669 N/A
    831461 8itc:C (1.88) BS02 QA0 5.4.2.11
    5.4.2.4
    GO:0003824 ... P18669 N/A
    831462 8itd:C (1.9) BS01 QA3 5.4.2.11
    5.4.2.4
    GO:0003824 ... P18669 N/A
    831463 8itf:R (3.46) BS01 8IA ? GO:0001594 ... Q5QD04 37225986
    831464 8itg:A (2.25) BS01 peptide ? N/A N/A 37550286
    831465 8itg:A (2.25) BS02 CA ? N/A N/A 37550286
    831466 8ith:A (2.55) BS01 CA ? N/A N/A 37550286
    831467 8itn:A (2.6) BS01 ZN 3.4.19.12 GO:0004843 ... Q22240 37740002
    831468 8itn:C (2.6) BS01 ZN 3.4.19.12 GO:0004843 ... Q22240 37740002
    831469 8ito:A (2.1) BS01 FE ? GO:0005506 ... Q726L3 N/A
    831470 8ito:B (2.1) BS01 FE ? GO:0005506 ... Q726L3 N/A
    831471 8itp:B (3.0) BS01 ZN 3.4.19.12 GO:0004843 ... Q22240 37740002
    831472 8itp:D (3.0) BS01 ZN 3.4.19.12 GO:0004843 ... Q22240 37740002
    831473 8itr:A (2.44) BS01 LPC ? GO:0003677 ... P02768 37731243
    831474 8itr:A (2.44) BS02 LPC ? GO:0003677 ... P02768 37731243
    831475 8itr:A (2.44) BS03 LPC ? GO:0003677 ... P02768 37731243
    831476 8itr:A (2.44) BS04 LPC ? GO:0003677 ... P02768 37731243
    831477 8itr:A (2.44) BS05 LPC ? GO:0003677 ... P02768 37731243
    831478 8itr:A (2.44) BS06 LPC ? GO:0003677 ... P02768 37731243
    831479 8itt:A (3.03) BS01 LPC ? GO:0003677 ... P02768 37731243
    831480 8itt:A (3.03) BS02 LPC ? GO:0003677 ... P02768 37731243
    831481 8itt:A (3.03) BS03 LPC ? GO:0003677 ... P02768 37731243
    831482 8itt:B (3.03) BS01 LPC ? GO:0003677 ... P02768 37731243
    831483 8itt:B (3.03) BS02 LPC ? GO:0003677 ... P02768 37731243
    831484 8itt:B (3.03) BS03 LPC ? GO:0003677 ... P02768 37731243
    831485 8itv:A (2.3) BS01 MG 3.6.5.- GO:0000054 ... P62826 N/A
    831486 8itv:A (2.3) BS02 GTP 3.6.5.- GO:0000054 ... P62826 N/A
    831487 8itv:C (2.3) BS01 Q73 ? GO:0000055 ... P30822 N/A
    831488 8itx:A (1.12) BS01 SXP ? GO:0030246 ... P17931 N/A
    831489 8itx:B (1.12) BS01 SXP ? GO:0030246 ... P17931 N/A
    831490 8ity:3 (3.9) BS01 dna ? GO:0000978 ... Q92966 37165065
    831491 8ity:3 (3.9) BS02 dna ? GO:0000978 ... Q92966 37165065
    831492 8ity:4 (3.9) BS01 dna ? GO:0000978 ... Q5SXM2 37165065
    831493 8ity:4 (3.9) BS02 dna ? GO:0000978 ... Q5SXM2 37165065
    831494 8ity:A (3.9) BS01 dna 2.7.7.6 GO:0000287 ... O14802 37165065
    831495 8ity:A (3.9) BS02 ZN 2.7.7.6 GO:0000287 ... O14802 37165065
    831496 8ity:A (3.9) BS03 ZN 2.7.7.6 GO:0000287 ... O14802 37165065
    831497 8ity:A (3.9) BS04 MG 2.7.7.6 GO:0000287 ... O14802 37165065
    831498 8ity:B (3.9) BS01 dna 2.7.7.6 GO:0000428 ... Q9NW08 37165065
    831499 8ity:B (3.9) BS02 dna 2.7.7.6 GO:0000428 ... Q9NW08 37165065
    831500 8ity:B (3.9) BS03 ZN 2.7.7.6 GO:0000428 ... Q9NW08 37165065
    831501 8ity:I (3.9) BS01 ZN ? GO:0000428 ... Q9Y2Y1 37165065
    831502 8ity:J (3.9) BS01 ZN ? GO:0000428 ... P62875 37165065
    831503 8ity:L (3.9) BS01 ZN ? GO:0000428 ... P53803 37165065
    831504 8ity:P (3.9) BS01 dna ? GO:0000428 ... Q9H1D9 37165065
    831505 8ity:P (3.9) BS02 SF4 ? GO:0000428 ... Q9H1D9 37165065
    831506 8ity:U (3.9) BS01 dna ? GO:0000785 ... P20226 37165065
    831507 8ity:U (3.9) BS02 dna ? GO:0000785 ... P20226 37165065
    831508 8ity:V (3.9) BS01 dna ? GO:0000126 ... Q9HAW0 37165065
    831509 8ity:V (3.9) BS02 dna ? GO:0000126 ... Q9HAW0 37165065
    831510 8ity:W (3.9) BS01 dna ? GO:0000126 ... A6H8Y1 37165065
    831511 8ity:W (3.9) BS02 dna ? GO:0000126 ... A6H8Y1 37165065
    831512 8itz:A (1.22) BS01 QB2 ? GO:0030246 ... P17931 N/A
    831513 8iu0:A (2.66) BS01 RET N/A GO:0016020 ... N/A 37652010
    831514 8iu1:A (1.97) BS01 QB2 ? GO:0030246 ... P16110 N/A
    831515 8iu2:R (3.35) BS01 RET ? GO:0001750 ... P04000 N/A
    831516 8iu7:A (1.86) BS01 MG ? GO:0003676 ... A0A266CBU5 N/A
    831517 8iu7:A (1.86) BS02 MG ? GO:0003676 ... A0A266CBU5 N/A
    831518 8iu7:B (1.86) BS01 MG ? GO:0003676 ... A0A266CBU5 N/A
    831519 8iu7:B (1.86) BS02 MG ? GO:0003676 ... A0A266CBU5 N/A
    831520 8iu7:C (1.86) BS01 MG ? GO:0003676 ... A0A266CBU5 N/A
    831521 8iu7:C (1.86) BS02 MG ? GO:0003676 ... A0A266CBU5 N/A
    831522 8iu7:D (1.86) BS01 MG ? GO:0003676 ... A0A266CBU5 N/A
    831523 8iu7:D (1.86) BS02 MG ? GO:0003676 ... A0A266CBU5 N/A
    831524 8iu9:A (1.8) BS01 GLC ? GO:0016787 ... A5FBI2 37269952
    831525 8iu9:A (1.8) BS02 BGC ? GO:0016787 ... A5FBI2 37269952
    831526 8iu9:A (1.8) BS03 GLC ? GO:0016787 ... A5FBI2 37269952
    831527 8iua:A (1.8) BS01 GLC ? GO:0016787 ... A5FBI2 37269952
    831528 8iua:A (1.8) BS02 GLC ? GO:0016787 ... A5FBI2 37269952
    831529 8iua:A (1.8) BS03 BGC ? GO:0016787 ... A5FBI2 37269952
    831530 8iub:A (1.18) BS01 GLC ? GO:0016787 ... A5FBI2 37269952
    831531 8iub:A (1.18) BS02 GLC ? GO:0016787 ... A5FBI2 37269952
    831532 8iub:A (1.18) BS03 GLC ? GO:0016787 ... A5FBI2 37269952
    831533 8iuc:A (1.56) BS01 BGC ? GO:0003824 ... A5FBJ5 37269952
    831534 8iuc:A (1.56) BS02 GLC ? GO:0003824 ... A5FBJ5 37269952
    831535 8iuc:B (1.56) BS01 BGC ? GO:0003824 ... A5FBJ5 37269952
    831536 8iuc:B (1.56) BS02 GLC ? GO:0003824 ... A5FBJ5 37269952
    831537 8iuc:C (1.56) BS01 BGC ? GO:0003824 ... A5FBJ5 37269952
    831538 8iuc:C (1.56) BS02 GLC ? GO:0003824 ... A5FBJ5 37269952
    831539 8iue:3 (4.1) BS01 dna ? GO:0000978 ... Q92966 37165065
    831540 8iue:3 (4.1) BS02 dna ? GO:0000978 ... Q92966 37165065
    831541 8iue:4 (4.1) BS01 dna ? GO:0000978 ... Q5SXM2 37165065
    831542 8iue:4 (4.1) BS02 dna ? GO:0000978 ... Q5SXM2 37165065
    831543 8iue:A (4.1) BS01 ZN 2.7.7.6 GO:0000287 ... O14802 37165065
    831544 8iue:A (4.1) BS02 ZN 2.7.7.6 GO:0000287 ... O14802 37165065
    831545 8iue:A (4.1) BS03 MG 2.7.7.6 GO:0000287 ... O14802 37165065
    831546 8iue:B (4.1) BS01 ZN 2.7.7.6 GO:0000428 ... Q9NW08 37165065
    831547 8iue:E (4.1) BS01 dna ? GO:0000428 ... P19388 37165065
    831548 8iue:I (4.1) BS01 ZN ? GO:0000428 ... Q9Y2Y1 37165065
    831549 8iue:J (4.1) BS01 ZN ? GO:0000428 ... P62875 37165065
    831550 8iue:L (4.1) BS01 ZN ? GO:0000428 ... P53803 37165065
    831551 8iue:P (4.1) BS01 dna ? GO:0000428 ... Q9H1D9 37165065
    831552 8iue:P (4.1) BS02 dna ? GO:0000428 ... Q9H1D9 37165065
    831553 8iue:P (4.1) BS03 SF4 ? GO:0000428 ... Q9H1D9 37165065
    831554 8iue:U (4.1) BS01 dna ? GO:0000785 ... P20226 37165065
    831555 8iue:U (4.1) BS02 dna ? GO:0000785 ... P20226 37165065
    831556 8iue:V (4.1) BS01 dna ? GO:0000126 ... Q9HAW0 37165065
    831557 8iue:V (4.1) BS02 dna ? GO:0000126 ... Q9HAW0 37165065
    831558 8iue:W (4.1) BS01 dna ? GO:0000126 ... A6H8Y1 37165065
    831559 8iue:W (4.1) BS02 dna ? GO:0000126 ... A6H8Y1 37165065
    831560 8iuf:1A (2.81) BS01 FES N/A GO:0008137 ... N/A 38388527
    831561 8iuf:1A (2.81) BS02 SF4 N/A GO:0008137 ... N/A 38388527
    831562 8iuf:1A (2.81) BS03 SF4 N/A GO:0008137 ... N/A 38388527
    831563 8iuf:4D (2.81) BS01 S12 N/A N/A N/A 38388527
    831564 8iuf:4F (2.81) BS01 S12 N/A N/A N/A 38388527
    831565 8iuf:5B (2.81) BS01 ZN N/A N/A N/A 38388527
    831566 8iuf:A6 (2.81) BS01 ZMP N/A N/A N/A 38388527
    831567 8iuf:A9 (2.81) BS01 NDP N/A N/A N/A 38388527
    831568 8iuf:AB (2.81) BS01 ZMP N/A GO:0006633 ... N/A 38388527
    831569 8iuf:AC (2.81) BS01 ZMP N/A GO:0006633 ... N/A 38388527
    831570 8iuf:B5 (2.81) BS01 U10 N/A N/A N/A 38388527
    831571 8iuf:B9 (2.81) BS01 ZMP N/A N/A N/A 38388527
    831572 8iuf:C1 (2.81) BS01 HEA 7.1.1.9 GO:0004129 ... Q34463 38388527
    831573 8iuf:C1 (2.81) BS02 HEA 7.1.1.9 GO:0004129 ... Q34463 38388527
    831574 8iuf:C1 (2.81) BS03 CU 7.1.1.9 GO:0004129 ... Q34463 38388527
    831575 8iuf:C1 (2.81) BS04 MG 7.1.1.9 GO:0004129 ... Q34463 38388527
    831576 8iuf:C2 (2.81) BS01 CU 7.1.1.9 GO:0004129 ... Q9XN19 38388527
    831577 8iuf:C2 (2.81) BS02 CU 7.1.1.9 GO:0004129 ... Q9XN19 38388527
    831578 8iuf:E6 (2.81) BS01 peptide N/A N/A N/A 38388527
    831579 8iuf:E7 (2.81) BS01 ZN N/A N/A N/A 38388527
    831580 8iuf:N4 (2.81) BS01 U10 7.1.1.2 GO:0003954 ... A0A0S2YRV6 38388527
    831581 8iuf:QC (2.81) BS01 HEM ? GO:0005739 ... A0A0S2YRT7 38388527
    831582 8iuf:QC (2.81) BS02 HEM ? GO:0005739 ... A0A0S2YRT7 38388527
    831583 8iuf:QD (2.81) BS01 HEC 7.1.1.8 GO:0005739 ... P20114 38388527
    831584 8iuf:QE (2.81) BS01 FES N/A GO:0008121 ... N/A 38388527
    831585 8iuf:Qc (2.81) BS01 HEM ? GO:0005739 ... A0A0S2YRT7 38388527
    831586 8iuf:Qc (2.81) BS02 HEM ? GO:0005739 ... A0A0S2YRT7 38388527
    831587 8iuf:Qd (2.81) BS01 HEC 7.1.1.8 GO:0005739 ... P20114 38388527
    831588 8iuf:Qe (2.81) BS01 FES N/A GO:0008121 ... N/A 38388527
    831589 8iuf:S2 (2.81) BS01 SF4 N/A GO:0016651 ... N/A 38388527
    831590 8iuf:S6 (2.81) BS01 ZN N/A N/A N/A 38388527
    831591 8iuf:S7 (2.81) BS01 SF4 N/A GO:0008137 ... N/A 38388527
    831592 8iuf:S8 (2.81) BS01 SF4 N/A GO:0016020 ... N/A 38388527
    831593 8iuf:S8 (2.81) BS02 SF4 N/A GO:0016020 ... N/A 38388527
    831594 8iuf:V1 (2.81) BS01 FMN N/A GO:0010181 ... N/A 38388527
    831595 8iuf:V1 (2.81) BS02 SF4 N/A GO:0010181 ... N/A 38388527
    831596 8iuf:V2 (2.81) BS01 FES N/A GO:0016491 ... N/A 38388527
    831597 8iug:0 (2.86) BS01 BCL ? GO:0005886 ... A7NQE9 37468106
    831598 8iug:0 (2.86) BS02 BCL ? GO:0005886 ... A7NQE9 37468106
    831599 8iug:0 (2.86) BS03 U42 ? GO:0005886 ... A7NQE9 37468106
    831600 8iug:0 (2.86) BS04 BCL ? GO:0005886 ... A7NQE9 37468106

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).