SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    832001 8ij6:D (2.28) BS01 NAP ? N/A F2LIG4 N/A
    832002 8ij9:A (2.04) BS01 GTP 3.6.5.2 GO:0003924 ... P61294 37172719
    832003 8ij9:A (2.04) BS02 MG 3.6.5.2 GO:0003924 ... P61294 37172719
    832004 8ij9:B (2.04) BS01 GTP 3.6.5.2 GO:0003924 ... P61294 37172719
    832005 8ij9:B (2.04) BS02 MG 3.6.5.2 GO:0003924 ... P61294 37172719
    832006 8ija:A (2.69) BS01 NIO ? GO:0004930 ... Q8TDS4 38012147
    832007 8ijb:A (3.23) BS01 OJX ? GO:0004930 ... Q8TDS4 38012147
    832008 8ijd:A (3.25) BS01 FI7 ? GO:0004930 ... Q8TDS4 38012147
    832009 8ijg:A (2.27) BS01 NAP ? N/A F2LIG4 N/A
    832010 8ijg:B (2.27) BS01 NAP ? N/A F2LIG4 N/A
    832011 8ijg:C (2.27) BS01 NAP ? N/A F2LIG4 N/A
    832012 8ijg:D (2.27) BS01 NAP ? N/A F2LIG4 N/A
    832013 8ijk:A (3.4) BS01 7PN ? GO:0005216 ... O43526 38167918
    832014 8ijk:A (3.4) BS02 7PN ? GO:0005216 ... O43526 38167918
    832015 8ijk:B (3.4) BS01 7PN ? GO:0005216 ... O43526 38167918
    832016 8ijk:B (3.4) BS02 7PN ? GO:0005216 ... O43526 38167918
    832017 8ijk:C (3.4) BS01 7PN ? GO:0005216 ... O43526 38167918
    832018 8ijk:C (3.4) BS02 7PN ? GO:0005216 ... O43526 38167918
    832019 8ijk:D (3.4) BS01 7PN ? GO:0005216 ... O43526 38167918
    832020 8ijk:D (3.4) BS02 7PN ? GO:0005216 ... O43526 38167918
    832021 8ijl:A (2.62) BS01 ALF 7.2.2.13
    7.2.2.19
    GO:0000166 ... P54708 37482134
    832022 8ijl:A (2.62) BS02 MG 7.2.2.13
    7.2.2.19
    GO:0000166 ... P54708 37482134
    832023 8ijl:A (2.62) BS03 ADP 7.2.2.13
    7.2.2.19
    GO:0000166 ... P54708 37482134
    832024 8ijl:A (2.62) BS04 CLR 7.2.2.13
    7.2.2.19
    GO:0000166 ... P54708 37482134
    832025 8ijl:A (2.62) BS05 Q7G 7.2.2.13
    7.2.2.19
    GO:0000166 ... P54708 37482134
    832026 8ijl:A (2.62) BS06 Q7G 7.2.2.13
    7.2.2.19
    GO:0000166 ... P54708 37482134
    832027 8ijl:B (2.62) BS01 CLR ? GO:0001666 ... P07340 37482134
    832028 8ijl:B (2.62) BS02 Q7G ? GO:0001666 ... P07340 37482134
    832029 8ijm:A (3.13) BS01 ACP 7.2.2.13
    7.2.2.19
    GO:0000166 ... P54708 37482134
    832030 8ijm:B (3.13) BS01 CLR ? GO:0001666 ... P07340 37482134
    832031 8ijn:A (1.8) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 20385840
    832032 8ijn:A (1.8) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 20385840
    832033 8ijn:A (1.8) BS03 NO 7.1.1.9 GO:0004129 ... P00396 20385840
    832034 8ijn:A (1.8) BS04 CU 7.1.1.9 GO:0004129 ... P00396 20385840
    832035 8ijn:A (1.8) BS05 MG 7.1.1.9 GO:0004129 ... P00396 20385840
    832036 8ijn:B (1.8) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 20385840
    832037 8ijn:B (1.8) BS02 CUA 7.1.1.9 GO:0004129 ... P68530 20385840
    832038 8ijn:C (1.8) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 20385840
    832039 8ijn:F (1.8) BS01 ZN ? GO:0005740 ... P00428 20385840
    832040 8ijn:M (1.8) BS01 DMU ? GO:0006123 ... P10175 20385840
    832041 8ijn:N (1.8) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 20385840
    832042 8ijn:N (1.8) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 20385840
    832043 8ijn:N (1.8) BS03 NO 7.1.1.9 GO:0004129 ... P00396 20385840
    832044 8ijn:N (1.8) BS04 CU 7.1.1.9 GO:0004129 ... P00396 20385840
    832045 8ijn:N (1.8) BS05 MG 7.1.1.9 GO:0004129 ... P00396 20385840
    832046 8ijn:O (1.8) BS01 CUA 7.1.1.9 GO:0004129 ... P68530 20385840
    832047 8ijn:O (1.8) BS02 DMU 7.1.1.9 GO:0004129 ... P68530 20385840
    832048 8ijn:P (1.8) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 20385840
    832049 8ijn:P (1.8) BS02 DMU 7.1.1.9 GO:0004129 ... P00415 20385840
    832050 8ijn:S (1.8) BS01 ZN ? GO:0005740 ... P00428 20385840
    832051 8ijn:T (1.8) BS01 DMU ? GO:0005743 ... P07471 20385840
    832052 8ijn:W (1.8) BS01 DMU ? GO:0006123 ... P07470 20385840
    832053 8ijn:Z (1.8) BS01 DMU ? GO:0006123 ... P10175 20385840
    832054 8ijo:A (1.65) BS01 dna 3.1.21.- N/A P15005 N/A
    832055 8ijo:A (1.65) BS02 dna 3.1.21.- N/A P15005 N/A
    832056 8ijo:B (1.65) BS01 dna 3.1.21.- N/A P15005 N/A
    832057 8ijo:B (1.65) BS02 dna 3.1.21.- N/A P15005 N/A
    832058 8ijp:A (1.55) BS01 dna 3.1.21.- N/A P15005 N/A
    832059 8ijp:A (1.55) BS02 dna 3.1.21.- N/A P15005 N/A
    832060 8ijp:B (1.55) BS01 dna 3.1.21.- N/A P15005 N/A
    832061 8ijp:B (1.55) BS02 dna 3.1.21.- N/A P15005 N/A
    832062 8ijq:A (3.45) BS01 16C 2.7.8.- GO:0016780 ... Q96LT4 38388831
    832063 8ijq:B (3.45) BS01 16C 2.7.8.- GO:0016780 ... Q96LT4 38388831
    832064 8ijq:C (3.45) BS01 16C 2.7.8.- GO:0016780 ... Q96LT4 38388831
    832065 8ijq:D (3.45) BS01 16C 2.7.8.- GO:0016780 ... Q96LT4 38388831
    832066 8ijq:E (3.45) BS01 16C 2.7.8.- GO:0016780 ... Q96LT4 38388831
    832067 8ijq:F (3.45) BS01 16C 2.7.8.- GO:0016780 ... Q96LT4 38388831
    832068 8ijr:A (3.29) BS01 Z0P 2.7.8.- GO:0000139 ... Q96LT4 38388831
    832069 8ijr:A (3.29) BS02 OPE 2.7.8.- GO:0000139 ... Q96LT4 38388831
    832070 8ijr:B (3.29) BS01 Z0P 2.7.8.- GO:0000139 ... Q96LT4 38388831
    832071 8ijr:B (3.29) BS02 OPE 2.7.8.- GO:0000139 ... Q96LT4 38388831
    832072 8ijr:C (3.29) BS01 Z0P 2.7.8.- GO:0000139 ... Q96LT4 38388831
    832073 8ijr:D (3.29) BS01 Z0P 2.7.8.- GO:0000139 ... Q96LT4 38388831
    832074 8ijr:E (3.29) BS01 Z0P 2.7.8.- GO:0000139 ... Q96LT4 38388831
    832075 8ijr:F (3.29) BS01 Z0P 2.7.8.- GO:0000139 ... Q96LT4 38388831
    832076 8ijv:A (2.1) BS01 MG 7.2.2.19 GO:0000166 ... P19156 37726448
    832077 8ijv:A (2.1) BS02 PWI 7.2.2.19 GO:0000166 ... P19156 37726448
    832078 8ijv:B (2.1) BS01 CLR ? GO:0001671 ... P18434 37726448
    832079 8ijv:B (2.1) BS02 CLR ? GO:0001671 ... P18434 37726448
    832080 8ijw:A (2.19) BS01 MG 7.2.2.19 GO:0000166 ... P19156 37726448
    832081 8ijw:A (2.19) BS02 PXR 7.2.2.19 GO:0000166 ... P19156 37726448
    832082 8ijw:B (2.19) BS01 CLR ? GO:0001671 ... P18434 37726448
    832083 8ijw:B (2.19) BS02 CLR ? GO:0001671 ... P18434 37726448
    832084 8ijx:A (2.08) BS01 MG 7.2.2.19 GO:0000166 ... P19156 37726448
    832085 8ijx:A (2.08) BS02 PZ0 7.2.2.19 GO:0000166 ... P19156 37726448
    832086 8ijx:B (2.08) BS01 CLR ? GO:0001671 ... P18434 37726448
    832087 8ijy:A (2.38) BS01 SF4 N/A N/A Q31P18 N/A
    832088 8ijy:A (2.38) BS02 HDF N/A N/A Q31P18 N/A
    832089 8ijy:A (2.38) BS03 FAD N/A N/A Q31P18 N/A
    832090 8ik2:A (2.151) BS01 5UF 2.3.1.- GO:0009102 ... Q51559 N/A
    832091 8ik3:A (3.3) BS01 1SY ? GO:0000045 ... Q86WV6
    Q9HYC4
    37086726
    832092 8ik3:C (3.3) BS01 1SY ? GO:0000045 ... Q86WV6
    Q9HYC4
    37086726
    832093 8ik3:E (3.3) BS01 1SY ? GO:0000045 ... Q86WV6
    Q9HYC4
    37086726
    832094 8ik3:F (3.3) BS01 1SY ? GO:0000045 ... Q86WV6
    Q9HYC4
    37086726
    832095 8ik3:G (3.3) BS01 1SY ? GO:0000045 ... Q86WV6
    Q9HYC4
    37086726
    832096 8ik3:H (3.3) BS01 1SY ? GO:0000045 ... Q86WV6
    Q9HYC4
    37086726
    832097 8ik4:A (2.1) BS01 dna 3.1.21.- N/A P15005 N/A
    832098 8ik4:A (2.1) BS02 dna 3.1.21.- N/A P15005 N/A
    832099 8ik4:B (2.1) BS01 dna 3.1.21.- N/A P15005 N/A
    832100 8ik4:B (2.1) BS02 dna 3.1.21.- N/A P15005 N/A
    832101 8ik5:C (1.989) BS01 dna ? GO:0000981 ... Q8TE12 N/A
    832102 8ik5:C (1.989) BS02 dna ? GO:0000981 ... Q8TE12 N/A
    832103 8ik6:A (3.3) BS01 ZN N/A GO:0004842 ... O60260 39221915
    832104 8ik6:A (3.3) BS02 ZN N/A GO:0004842 ... O60260 39221915
    832105 8ik6:A (3.3) BS03 ZN N/A GO:0004842 ... O60260 39221915
    832106 8ik6:A (3.3) BS04 ZN N/A GO:0004842 ... O60260 39221915
    832107 8ik6:A (3.3) BS05 ZN N/A GO:0004842 ... O60260 39221915
    832108 8ik6:A (3.3) BS06 ZN N/A GO:0004842 ... O60260 39221915
    832109 8ik6:C (3.3) BS01 ZN N/A GO:0004842 ... O60260 39221915
    832110 8ik6:C (3.3) BS02 ZN N/A GO:0004842 ... O60260 39221915
    832111 8ik6:C (3.3) BS03 ZN N/A GO:0004842 ... O60260 39221915
    832112 8ik6:C (3.3) BS04 ZN N/A GO:0004842 ... O60260 39221915
    832113 8ik6:C (3.3) BS05 ZN N/A GO:0004842 ... O60260 39221915
    832114 8ik6:C (3.3) BS06 ZN N/A GO:0004842 ... O60260 39221915
    832115 8ik6:C (3.3) BS07 ZN N/A GO:0004842 ... O60260 39221915
    832116 8ik6:C (3.3) BS08 ZN N/A GO:0004842 ... O60260 39221915
    832117 8ik8:A (1.8) BS01 dna 3.1.21.- N/A P15005 N/A
    832118 8ik8:A (1.8) BS02 dna 3.1.21.- N/A P15005 N/A
    832119 8ik8:B (1.8) BS01 dna 3.1.21.- N/A P15005 N/A
    832120 8ik8:B (1.8) BS02 dna 3.1.21.- N/A P15005 N/A
    832121 8ikd:A (2.1) BS01 dna 3.1.21.- N/A P15005 N/A
    832122 8ikd:A (2.1) BS02 dna 3.1.21.- N/A P15005 N/A
    832123 8ikd:B (2.1) BS01 dna 3.1.21.- N/A P15005 N/A
    832124 8ikd:B (2.1) BS02 dna 3.1.21.- N/A P15005 N/A
    832125 8ike:C (2.6) BS01 dna ? GO:0000981 ... Q8TE12 N/A
    832126 8ike:C (2.6) BS02 dna ? GO:0000981 ... Q8TE12 N/A
    832127 8ikg:R (3.4) BS01 Q2B ? GO:0004930 ... P21554 38830102
    832128 8ikh:R (3.3) BS01 Q2L ? GO:0004930 ... P21554 38830102
    832129 8ikm:A (1.92) BS01 ZN N/A GO:0004842 ... O60260 39221915
    832130 8ikm:A (1.92) BS02 ZN N/A GO:0004842 ... O60260 39221915
    832131 8ikm:A (1.92) BS03 ZN N/A GO:0004842 ... O60260 39221915
    832132 8ikm:A (1.92) BS04 ZN N/A GO:0004842 ... O60260 39221915
    832133 8ikm:A (1.92) BS05 ZN N/A GO:0004842 ... O60260 39221915
    832134 8ikm:A (1.92) BS06 ZN N/A GO:0004842 ... O60260 39221915
    832135 8ikt:A (2.6) BS01 ZN N/A GO:0004842 ... O60260 39221915
    832136 8ikt:A (2.6) BS02 ZN N/A GO:0004842 ... O60260 39221915
    832137 8ikt:A (2.6) BS03 ZN N/A GO:0004842 ... O60260 39221915
    832138 8ikt:A (2.6) BS04 ZN N/A GO:0004842 ... O60260 39221915
    832139 8ikt:A (2.6) BS05 ZN N/A GO:0004842 ... O60260 39221915
    832140 8ikt:A (2.6) BS06 ZN N/A GO:0004842 ... O60260 39221915
    832141 8ikt:B (2.6) BS01 3CN N/A N/A P62987 39221915
    832142 8ikv:A (2.35) BS01 ZN N/A GO:0004842 ... O60260 39221915
    832143 8ikv:A (2.35) BS02 ZN N/A GO:0004842 ... O60260 39221915
    832144 8ikv:A (2.35) BS03 ZN N/A GO:0004842 ... O60260 39221915
    832145 8ikv:A (2.35) BS04 ZN N/A GO:0004842 ... O60260 39221915
    832146 8ikv:A (2.35) BS05 ZN N/A GO:0004842 ... O60260 39221915
    832147 8ikv:A (2.35) BS06 ZN N/A GO:0004842 ... O60260 39221915
    832148 8ikv:A (2.35) BS07 ZN N/A GO:0004842 ... O60260 39221915
    832149 8ikv:A (2.35) BS08 ZN N/A GO:0004842 ... O60260 39221915
    832150 8ikv:C (2.35) BS01 ZN N/A GO:0004842 ... O60260 39221915
    832151 8ikv:C (2.35) BS02 ZN N/A GO:0004842 ... O60260 39221915
    832152 8ikv:C (2.35) BS03 ZN N/A GO:0004842 ... O60260 39221915
    832153 8ikv:C (2.35) BS04 ZN N/A GO:0004842 ... O60260 39221915
    832154 8ikv:C (2.35) BS05 ZN N/A GO:0004842 ... O60260 39221915
    832155 8ikv:C (2.35) BS06 ZN N/A GO:0004842 ... O60260 39221915
    832156 8ikv:C (2.35) BS07 ZN N/A GO:0004842 ... O60260 39221915
    832157 8ikv:C (2.35) BS08 ZN N/A GO:0004842 ... O60260 39221915
    832158 8ikx:A (1.5) BS01 MAN ? GO:0004650 ... Q9LYJ5 38359129
    832159 8ikz:A (1.75) BS01 MG 4.2.1.9 GO:0003824 ... Q9LIR4 39494391
    832160 8ikz:A (1.75) BS02 FES 4.2.1.9 GO:0003824 ... Q9LIR4 39494391
    832161 8il4:A (3.355) BS01 FAD ? GO:0016491 ... A0A5C3NW19 N/A
    832162 8il4:B (3.355) BS01 FAD ? GO:0016491 ... A0A5C3NW19 N/A
    832163 8il4:C (3.355) BS01 FAD ? GO:0016491 ... A0A5C3NW19 N/A
    832164 8il4:D (3.355) BS01 FAD ? GO:0016491 ... A0A5C3NW19 N/A
    832165 8il5:A (2.50006) BS01 FAD 1.1.3.13 GO:0016491 ... A0A977TIR6 N/A
    832166 8il5:B (2.50006) BS01 FAD 1.1.3.13 GO:0016491 ... A0A977TIR6 N/A
    832167 8il8:A (1.769) BS01 FE2 4.1.2.- GO:0005856 ... A0A0A2N3A3 39772954
    832168 8il8:B (1.769) BS01 FE2 4.1.2.- GO:0005856 ... A0A0A2N3A3 39772954
    832169 8il8:C (1.769) BS01 FE2 4.1.2.- GO:0005856 ... A0A0A2N3A3 39772954
    832170 8il8:D (1.769) BS01 FE2 4.1.2.- GO:0005856 ... A0A0A2N3A3 39772954
    832171 8il9:A (2.16) BS01 FMN 2.7.11.1 N/A A0A1Y1HNG4 39344087
    832172 8ila:A (2.79) BS01 GDP ? GO:0016757 ... A9Y8T1 37272735
    832173 8ila:A (2.79) BS02 Q3L ? GO:0016757 ... A9Y8T1 37272735
    832174 8ila:B (2.79) BS01 GDP ? GO:0016757 ... A9Y8T1 37272735
    832175 8ila:B (2.79) BS02 Q3L ? GO:0016757 ... A9Y8T1 37272735
    832176 8ila:C (2.79) BS01 GDP ? GO:0016757 ... A9Y8T1 37272735
    832177 8ila:C (2.79) BS02 Q3L ? GO:0016757 ... A9Y8T1 37272735
    832178 8ila:D (2.79) BS01 GDP ? GO:0016757 ... A9Y8T1 37272735
    832179 8ila:D (2.79) BS02 Q3L ? GO:0016757 ... A9Y8T1 37272735
    832180 8ild:A (2.25) BS01 dna 2.7.7.7 GO:0003677 ... P42494 37958741
    832181 8ild:A (2.25) BS02 GTP 2.7.7.7 GO:0003677 ... P42494 37958741
    832182 8ild:A (2.25) BS03 MN 2.7.7.7 GO:0003677 ... P42494 37958741
    832183 8ild:B (2.25) BS01 dna 2.7.7.7 GO:0003677 ... P42494 37958741
    832184 8ild:B (2.25) BS02 GTP 2.7.7.7 GO:0003677 ... P42494 37958741
    832185 8ild:B (2.25) BS03 MN 2.7.7.7 GO:0003677 ... P42494 37958741
    832186 8ile:A (3.0) BS01 dna 2.7.7.7 GO:0003677 ... P42494 37958741
    832187 8ile:A (3.0) BS02 MN 2.7.7.7 GO:0003677 ... P42494 37958741
    832188 8ile:A (3.0) BS03 MN 2.7.7.7 GO:0003677 ... P42494 37958741
    832189 8ile:A (3.0) BS04 7Q6 2.7.7.7 GO:0003677 ... P42494 37958741
    832190 8ile:B (3.0) BS01 dna 2.7.7.7 GO:0003677 ... P42494 37958741
    832191 8ile:B (3.0) BS02 dna 2.7.7.7 GO:0003677 ... P42494 37958741
    832192 8ile:B (3.0) BS03 MN 2.7.7.7 GO:0003677 ... P42494 37958741
    832193 8ile:B (3.0) BS04 MN 2.7.7.7 GO:0003677 ... P42494 37958741
    832194 8ile:B (3.0) BS05 7Q6 2.7.7.7 GO:0003677 ... P42494 37958741
    832195 8ilf:A (2.3) BS01 dna 2.7.7.7 GO:0003677 ... P42494 37958741
    832196 8ilf:A (2.3) BS02 MN 2.7.7.7 GO:0003677 ... P42494 37958741
    832197 8ilf:A (2.3) BS03 7Q6 2.7.7.7 GO:0003677 ... P42494 37958741
    832198 8ilf:B (2.3) BS01 dna 2.7.7.7 GO:0003677 ... P42494 37958741
    832199 8ilf:B (2.3) BS02 dna 2.7.7.7 GO:0003677 ... P42494 37958741
    832200 8ilf:B (2.3) BS03 dna 2.7.7.7 GO:0003677 ... P42494 37958741

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).