SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    832201 8ilf:B (2.3) BS04 dna 2.7.7.7 GO:0003677 ... P42494 37958741
    832202 8ilf:B (2.3) BS05 MN 2.7.7.7 GO:0003677 ... P42494 37958741
    832203 8ilf:B (2.3) BS06 7Q6 2.7.7.7 GO:0003677 ... P42494 37958741
    832204 8ilg:A (1.805) BS01 dna 2.7.7.7 GO:0003677 ... P42494 37958741
    832205 8ilg:A (1.805) BS02 dna 2.7.7.7 GO:0003677 ... P42494 37958741
    832206 8ilg:A (1.805) BS03 MN 2.7.7.7 GO:0003677 ... P42494 37958741
    832207 8ilg:B (1.805) BS01 dna 2.7.7.7 GO:0003677 ... P42494 37958741
    832208 8ilg:B (1.805) BS02 dna 2.7.7.7 GO:0003677 ... P42494 37958741
    832209 8ilg:B (1.805) BS03 MN 2.7.7.7 GO:0003677 ... P42494 37958741
    832210 8ilh:A (2.1) BS01 dna 2.7.7.7 GO:0003677 ... P42494 37958741
    832211 8ilh:A (2.1) BS02 MG 2.7.7.7 GO:0003677 ... P42494 37958741
    832212 8ilh:A (2.1) BS03 MG 2.7.7.7 GO:0003677 ... P42494 37958741
    832213 8ilh:A (2.1) BS04 GMS 2.7.7.7 GO:0003677 ... P42494 37958741
    832214 8ilh:B (2.1) BS01 dna 2.7.7.7 GO:0003677 ... P42494 37958741
    832215 8ilh:B (2.1) BS02 8EB 2.7.7.7 GO:0003677 ... P42494 37958741
    832216 8ilh:B (2.1) BS03 MG 2.7.7.7 GO:0003677 ... P42494 37958741
    832217 8ilh:B (2.1) BS04 MG 2.7.7.7 GO:0003677 ... P42494 37958741
    832218 8ilh:C (2.1) BS01 dna 2.7.7.7 GO:0003677 ... P42494 37958741
    832219 8ilh:C (2.1) BS02 dna 2.7.7.7 GO:0003677 ... P42494 37958741
    832220 8ilh:C (2.1) BS03 MG 2.7.7.7 GO:0003677 ... P42494 37958741
    832221 8ilh:C (2.1) BS04 MG 2.7.7.7 GO:0003677 ... P42494 37958741
    832222 8ilh:C (2.1) BS05 GMS 2.7.7.7 GO:0003677 ... P42494 37958741
    832223 8ilh:D (2.1) BS01 dna 2.7.7.7 GO:0003677 ... P42494 37958741
    832224 8ilh:D (2.1) BS02 MG 2.7.7.7 GO:0003677 ... P42494 37958741
    832225 8ilh:D (2.1) BS03 MG 2.7.7.7 GO:0003677 ... P42494 37958741
    832226 8ilh:D (2.1) BS04 GMS 2.7.7.7 GO:0003677 ... P42494 37958741
    832227 8ili:A (1.9) BS01 dna 2.7.7.7 GO:0003677 ... P42494 37958741
    832228 8ili:A (1.9) BS02 dna 2.7.7.7 GO:0003677 ... P42494 37958741
    832229 8ili:A (1.9) BS03 MG 2.7.7.7 GO:0003677 ... P42494 37958741
    832230 8ili:A (1.9) BS04 MG 2.7.7.7 GO:0003677 ... P42494 37958741
    832231 8ili:B (1.9) BS01 dna 2.7.7.7 GO:0003677 ... P42494 37958741
    832232 8ili:B (1.9) BS02 dna 2.7.7.7 GO:0003677 ... P42494 37958741
    832233 8ili:B (1.9) BS03 MG 2.7.7.7 GO:0003677 ... P42494 37958741
    832234 8ili:B (1.9) BS04 MG 2.7.7.7 GO:0003677 ... P42494 37958741
    832235 8ili:C (1.9) BS01 dna 2.7.7.7 GO:0003677 ... P42494 37958741
    832236 8ili:C (1.9) BS02 dna 2.7.7.7 GO:0003677 ... P42494 37958741
    832237 8ili:C (1.9) BS03 MG 2.7.7.7 GO:0003677 ... P42494 37958741
    832238 8ili:C (1.9) BS04 MG 2.7.7.7 GO:0003677 ... P42494 37958741
    832239 8ili:D (1.9) BS01 dna 2.7.7.7 GO:0003677 ... P42494 37958741
    832240 8ili:D (1.9) BS02 dna 2.7.7.7 GO:0003677 ... P42494 37958741
    832241 8ili:D (1.9) BS03 MG 2.7.7.7 GO:0003677 ... P42494 37958741
    832242 8ili:D (1.9) BS04 MG 2.7.7.7 GO:0003677 ... P42494 37958741
    832243 8ill:B (2.2) BS01 GLC N/A GO:0006091 ... N/A 38036853
    832244 8ilr:A (3.05) BS01 7TZ 2.7.11.1
    2.7.1.137
    2.7.1.153
    GO:0001944 ... P42336 37585458
    832245 8ils:A (3.1) BS01 7U5 2.7.11.1
    2.7.1.137
    2.7.1.153
    GO:0001944 ... P42336 37585458
    832246 8ilu:A (1.8) BS01 Q1L ? GO:0030246 ... P16110 38394996
    832247 8ilu:B (1.8) BS01 Q1L ? GO:0030246 ... P16110 38394996
    832248 8ilv:A (3.19) BS01 L2V 2.7.11.1
    2.7.1.137
    2.7.1.153
    GO:0001944 ... P42336 37585458
    832249 8ilw:C (2.712) BS01 dna ? GO:0000981 ... Q8TE12 N/A
    832250 8ilw:C (2.712) BS02 dna ? GO:0000981 ... Q8TE12 N/A
    832251 8im2:A (2.81) BS01 CO 1.13.11.27 GO:0000139 ... P32754 37794595
    832252 8im2:A (2.81) BS02 NTD 1.13.11.27 GO:0000139 ... P32754 37794595
    832253 8im2:B (2.81) BS01 CO 1.13.11.27 GO:0000139 ... P32754 37794595
    832254 8im2:B (2.81) BS02 NTD 1.13.11.27 GO:0000139 ... P32754 37794595
    832255 8im2:C (2.81) BS01 CO 1.13.11.27 GO:0000139 ... P32754 37794595
    832256 8im2:C (2.81) BS02 NTD 1.13.11.27 GO:0000139 ... P32754 37794595
    832257 8im2:D (2.81) BS01 CO 1.13.11.27 GO:0000139 ... P32754 37794595
    832258 8im2:D (2.81) BS02 NTD 1.13.11.27 GO:0000139 ... P32754 37794595
    832259 8im2:E (2.81) BS01 CO 1.13.11.27 GO:0000139 ... P32754 37794595
    832260 8im2:E (2.81) BS02 NTD 1.13.11.27 GO:0000139 ... P32754 37794595
    832261 8im2:F (2.81) BS01 CO 1.13.11.27 GO:0000139 ... P32754 37794595
    832262 8im2:F (2.81) BS02 NTD 1.13.11.27 GO:0000139 ... P32754 37794595
    832263 8im3:A (2.78) BS01 CO 1.13.11.27 GO:0000139 ... P32754 37794595
    832264 8im3:A (2.78) BS02 92U 1.13.11.27 GO:0000139 ... P32754 37794595
    832265 8im3:B (2.78) BS01 CO 1.13.11.27 GO:0000139 ... P32754 37794595
    832266 8im3:B (2.78) BS02 92U 1.13.11.27 GO:0000139 ... P32754 37794595
    832267 8im3:C (2.78) BS01 CO 1.13.11.27 GO:0000139 ... P32754 37794595
    832268 8im3:C (2.78) BS02 92U 1.13.11.27 GO:0000139 ... P32754 37794595
    832269 8im3:D (2.78) BS01 CO 1.13.11.27 GO:0000139 ... P32754 37794595
    832270 8im3:D (2.78) BS02 92U 1.13.11.27 GO:0000139 ... P32754 37794595
    832271 8im3:E (2.78) BS01 CO 1.13.11.27 GO:0000139 ... P32754 37794595
    832272 8im3:E (2.78) BS02 92U 1.13.11.27 GO:0000139 ... P32754 37794595
    832273 8im3:F (2.78) BS01 CO 1.13.11.27 GO:0000139 ... P32754 37794595
    832274 8im3:F (2.78) BS02 92U 1.13.11.27 GO:0000139 ... P32754 37794595
    832275 8im5:A (-1.00) BS01 ZN 2.3.2.31 N/A Q9WUB0 37595872
    832276 8im6:A (2.01) BS01 80I 2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0C6X1 36965419
    832277 8im6:B (2.01) BS01 80I 2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0C6X1 36965419
    832278 8im7:C (3.4) BS01 CLR ? GO:0000139 ... Q96BI3 37759382
    832279 8im7:C (3.4) BS02 CLR ? GO:0000139 ... Q96BI3 37759382
    832280 8im8:A (2.7) BS01 CA 3.2.1.1 GO:0004556 ... P25718 37241718
    832281 8im8:A (2.7) BS02 CA 3.2.1.1 GO:0004556 ... P25718 37241718
    832282 8im8:B (2.7) BS01 CA 3.2.1.1 GO:0004556 ... P25718 37241718
    832283 8im8:B (2.7) BS02 CA 3.2.1.1 GO:0004556 ... P25718 37241718
    832284 8im8:C (2.7) BS01 CA 3.2.1.1 GO:0004556 ... P25718 37241718
    832285 8im8:C (2.7) BS02 CA 3.2.1.1 GO:0004556 ... P25718 37241718
    832286 8im8:D (2.7) BS01 CA 3.2.1.1 GO:0004556 ... P25718 37241718
    832287 8im8:D (2.7) BS02 CA 3.2.1.1 GO:0004556 ... P25718 37241718
    832288 8imd:A (1.45) BS01 CU N/A GO:0005507 ... A0AAJ6N6D8 37442237
    832289 8imd:A (1.45) BS02 ZN N/A GO:0005507 ... A0AAJ6N6D8 37442237
    832290 8imd:B (1.45) BS01 CU N/A GO:0005507 ... A0AAJ6N6D8 37442237
    832291 8imd:B (1.45) BS02 ZN N/A GO:0005507 ... A0AAJ6N6D8 37442237
    832292 8ime:A (2.63) BS01 0XE 2.7.7.86 N/A Q8N884 37666112
    832293 8ime:A (2.63) BS02 ZN 2.7.7.86 N/A Q8N884 37666112
    832294 8ime:B (2.63) BS01 0XE 2.7.7.86 N/A Q8N884 37666112
    832295 8ime:B (2.63) BS02 ZN 2.7.7.86 N/A Q8N884 37666112
    832296 8imf:A (2.4) BS01 ZN 2.7.7.86 N/A Q8N884 37666112
    832297 8imf:B (2.4) BS01 3WL 2.7.7.86 N/A Q8N884 37666112
    832298 8imf:B (2.4) BS02 ZN 2.7.7.86 N/A Q8N884 37666112
    832299 8img:A (1.8) BS01 ZN 2.7.7.86 N/A Q8N884 37666112
    832300 8img:B (1.8) BS01 7XZ 2.7.7.86 N/A Q8N884 37666112
    832301 8img:B (1.8) BS02 ZN 2.7.7.86 N/A Q8N884 37666112
    832302 8imu:A (1.93) BS01 FES 4.2.1.9 GO:0003824 ... Q9LIR4 39494391
    832303 8imu:B (1.93) BS01 FES 4.2.1.9 GO:0003824 ... Q9LIR4 39494391
    832304 8imx:G (2.85) BS01 MG ? GO:0005515 ... O43292 37684232
    832305 8imx:G (2.85) BS02 Y01 ? GO:0005515 ... O43292 37684232
    832306 8imx:G (2.85) BS03 6OU ? GO:0005515 ... O43292 37684232
    832307 8imx:G (2.85) BS04 6OU ? GO:0005515 ... O43292 37684232
    832308 8imx:G (2.85) BS05 Y01 ? GO:0005515 ... O43292 37684232
    832309 8imx:G (2.85) BS06 Y01 ? GO:0005515 ... O43292 37684232
    832310 8imx:G (2.85) BS07 Y01 ? GO:0005515 ... O43292 37684232
    832311 8imx:G (2.85) BS08 AJP ? GO:0005515 ... O43292 37684232
    832312 8imx:G (2.85) BS09 80Y ? GO:0005515 ... O43292 37684232
    832313 8imx:K (2.85) BS01 peptide 3.-.-.- GO:0003923 ... Q92643 37684232
    832314 8imx:K (2.85) BS02 peptide 3.-.-.- GO:0003923 ... Q92643 37684232
    832315 8imx:K (2.85) BS03 CA 3.-.-.- GO:0003923 ... Q92643 37684232
    832316 8imx:S (2.85) BS01 peptide ? GO:0005515 ... Q96S52 37684232
    832317 8imx:S (2.85) BS02 LBN ? GO:0005515 ... Q96S52 37684232
    832318 8imx:S (2.85) BS03 80T ? GO:0005515 ... Q96S52 37684232
    832319 8imx:T (2.85) BS01 peptide ? GO:0006091 ... Q969N2
    Q9U6Y3
    37684232
    832320 8imx:T (2.85) BS02 81Q ? GO:0006091 ... Q969N2
    Q9U6Y3
    37684232
    832321 8imx:U (2.85) BS01 6OU ? GO:0005515 ... Q9H490 37684232
    832322 8imx:U (2.85) BS02 80T ? GO:0005515 ... Q9H490 37684232
    832323 8imx:U (2.85) BS03 Y01 ? GO:0005515 ... Q9H490 37684232
    832324 8imx:U (2.85) BS04 Y01 ? GO:0005515 ... Q9H490 37684232
    832325 8imx:U (2.85) BS05 Y01 ? GO:0005515 ... Q9H490 37684232
    832326 8imx:U (2.85) BS06 Y01 ? GO:0005515 ... Q9H490 37684232
    832327 8imx:U (2.85) BS07 81Q ? GO:0005515 ... Q9H490 37684232
    832328 8imy:D (3.22) BS01 Y01 ? GO:0001916 ... Q9BZM5 37684232
    832329 8imy:G (3.22) BS01 AJP ? GO:0006091 ... Q9U6Y3 37684232
    832330 8imy:G (3.22) BS02 6OU ? GO:0006091 ... Q9U6Y3 37684232
    832331 8imy:G (3.22) BS03 6OU ? GO:0006091 ... Q9U6Y3 37684232
    832332 8imy:G (3.22) BS04 Y01 ? GO:0006091 ... Q9U6Y3 37684232
    832333 8imy:G (3.22) BS05 Y01 ? GO:0006091 ... Q9U6Y3 37684232
    832334 8imy:G (3.22) BS06 MG ? GO:0006091 ... Q9U6Y3 37684232
    832335 8imy:G (3.22) BS07 05E ? GO:0006091 ... Q9U6Y3 37684232
    832336 8imy:K (3.22) BS01 CA 3.-.-.- GO:0003923 ... Q9U6Y3 37684232
    832337 8imy:S (3.22) BS01 LBN ? GO:0006091 ... Q9U6Y3 37684232
    832338 8imy:S (3.22) BS02 80T ? GO:0006091 ... Q9U6Y3 37684232
    832339 8imy:S (3.22) BS03 6OU ? GO:0006091 ... Q9U6Y3 37684232
    832340 8imy:S (3.22) BS04 Y01 ? GO:0006091 ... Q9U6Y3 37684232
    832341 8imy:T (3.22) BS01 81Q ? GO:0006091 ... Q9U6Y3 37684232
    832342 8imy:T (3.22) BS02 PA1 ? GO:0006091 ... Q9U6Y3 37684232
    832343 8imy:U (3.22) BS01 6OU ? GO:0006091 ... Q9U6Y3 37684232
    832344 8imy:U (3.22) BS02 Y01 ? GO:0006091 ... Q9U6Y3 37684232
    832345 8imy:U (3.22) BS03 Y01 ? GO:0006091 ... Q9U6Y3 37684232
    832346 8imy:U (3.22) BS04 Y01 ? GO:0006091 ... Q9U6Y3 37684232
    832347 8imy:U (3.22) BS05 Y01 ? GO:0006091 ... Q9U6Y3 37684232
    832348 8imy:U (3.22) BS06 Y01 ? GO:0006091 ... Q9U6Y3 37684232
    832349 8imy:U (3.22) BS07 Y01 ? GO:0006091 ... Q9U6Y3 37684232
    832350 8imy:U (3.22) BS08 Y01 ? GO:0006091 ... Q9U6Y3 37684232
    832351 8imy:U (3.22) BS09 Y01 ? GO:0006091 ... Q9U6Y3 37684232
    832352 8imy:U (3.22) BS10 6OU ? GO:0006091 ... Q9U6Y3 37684232
    832353 8imy:U (3.22) BS11 LBN ? GO:0006091 ... Q9U6Y3 37684232
    832354 8imy:U (3.22) BS12 81Q ? GO:0006091 ... Q9U6Y3 37684232
    832355 8imy:U (3.22) BS13 80T ? GO:0006091 ... Q9U6Y3 37684232
    832356 8imz:A (3.66) BS01 peptide ? GO:0005261 ... E2JF22 37590348
    832357 8imz:B (3.66) BS01 peptide ? GO:0005261 ... E2JF22 37590348
    832358 8imz:C (3.66) BS01 peptide ? GO:0005261 ... E2JF22 37590348
    832359 8imz:C (3.66) BS02 peptide ? GO:0005261 ... E2JF22 37590348
    832360 8in0:A (1.8) BS01 peptide ? N/A Q9Z2X8 N/A
    832361 8in2:A (3.08) BS01 FE 1.13.11.29 GO:0005737 ... Q70FG7 40055856
    832362 8in2:B (3.08) BS01 FE 1.13.11.29 GO:0005737 ... Q70FG7 40055856
    832363 8in6:A (1.9) BS01 GGP ? GO:0005576 ... A0A1B4XTR1 37910430
    832364 8in7:A (1.9) BS01 UPG 2.4.1.- GO:0008194 ... W8JMV4 N/A
    832365 8in8:B (3.0) BS01 rna ? N/A Q74DF6 37311833
    832366 8in8:B (3.0) BS02 dna ? N/A Q74DF6 37311833
    832367 8in8:C (3.0) BS01 rna ? GO:0003676 ... Q74DF5 37311833
    832368 8in8:C (3.0) BS02 dna ? GO:0003676 ... Q74DF5 37311833
    832369 8in8:C (3.0) BS03 MG ? GO:0003676 ... Q74DF5 37311833
    832370 8in9:A (3.4) BS01 9EF ? GO:0004315 ... E0D202 37216195
    832371 8ina:A (1.86) BS01 UDP 2.4.1.- GO:0008194 ... W8JMV4 N/A
    832372 8inb:A (3.1) BS01 rna N/A N/A N/A 37990011
    832373 8inb:A (3.1) BS02 dna N/A N/A N/A 37990011
    832374 8inb:A (3.1) BS03 dna N/A N/A N/A 37990011
    832375 8ind:A (1.85) BS01 6JI 2.4.1.- GO:0008194 ... W8JMV4 N/A
    832376 8ind:A (1.85) BS02 UDP 2.4.1.- GO:0008194 ... W8JMV4 N/A
    832377 8ine:3 (3.2) BS01 rna ? GO:0000463 ... Q6DKI1 37491604
    832378 8ine:3 (3.2) BS02 rna ? GO:0000463 ... Q6DKI1 37491604
    832379 8ine:3 (3.2) BS03 rna ? GO:0000463 ... Q6DKI1 37491604
    832380 8ine:4 (3.2) BS01 rna ? GO:0001649 ... Q9BZE4 37491604
    832381 8ine:4 (3.2) BS02 rna ? GO:0001649 ... Q9BZE4 37491604
    832382 8ine:6 (3.2) BS01 rna ? GO:0000054 ... P56537 37491604
    832383 8ine:7 (3.2) BS01 rna ? GO:0003735 ... Q9UHA3 37491604
    832384 8ine:9 (3.2) BS01 rna ? GO:0003676 ... O00488 37491604
    832385 8ine:A (3.2) BS01 rna ? GO:0003723 ... Q13823 37491604
    832386 8ine:A (3.2) BS02 GDP ? GO:0003723 ... Q13823 37491604
    832387 8ine:B (3.2) BS01 rna ? GO:0002181 ... P39023 37491604
    832388 8ine:C (3.2) BS01 rna ? GO:0002181 ... P47914 37491604
    832389 8ine:D (3.2) BS01 rna ? GO:0002181 ... P36578 37491604
    832390 8ine:D (3.2) BS02 rna ? GO:0002181 ... P36578 37491604
    832391 8ine:E (3.2) BS01 rna ? GO:0002181 ... P62888 37491604
    832392 8ine:F (3.2) BS01 rna ? GO:0002181 ... P49207 37491604
    832393 8ine:G (3.2) BS01 rna ? GO:0000470 ... P62424 37491604
    832394 8ine:G (3.2) BS02 rna ? GO:0000470 ... P62424 37491604
    832395 8ine:H (3.2) BS01 rna ? GO:0000463 ... P42766 37491604
    832396 8ine:H (3.2) BS02 rna ? GO:0000463 ... P42766 37491604
    832397 8ine:I (3.2) BS01 rna ? GO:0002181 ... P32969 37491604
    832398 8ine:J (3.2) BS01 rna ? GO:0000027 ... Q9UKD2 37491604
    832399 8ine:K (3.2) BS01 rna ? GO:0002181 ... Q9Y3U8 37491604
    832400 8ine:L (3.2) BS01 rna ? GO:0002181 ... P46776 37491604

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).