SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    832401 8ine:M (3.2) BS01 rna ? GO:0000448 ... P61927 37491604
    832402 8ine:M (3.2) BS02 rna ? GO:0000448 ... P61927 37491604
    832403 8ine:N (3.2) BS01 rna ? GO:0000027 ... P62913 37491604
    832404 8ine:N (3.2) BS02 rna ? GO:0000027 ... P62913 37491604
    832405 8ine:O (3.2) BS01 rna ? GO:0002181 ... P63173 37491604
    832406 8ine:P (3.2) BS01 rna ? GO:0002181 ... P62891 37491604
    832407 8ine:P (3.2) BS02 rna ? GO:0002181 ... P62891 37491604
    832408 8ine:Q (3.2) BS01 rna ? GO:0002181 ... P26373 37491604
    832409 8ine:Q (3.2) BS02 rna ? GO:0002181 ... P26373 37491604
    832410 8ine:R (3.2) BS01 rna ? GO:0005515 ... Q96EY4 37491604
    832411 8ine:R (3.2) BS02 rna ? GO:0005515 ... Q96EY4 37491604
    832412 8ine:S (3.2) BS01 rna ? GO:0002181 ... P50914 37491604
    832413 8ine:T (3.2) BS01 rna ? N/A Q9UNZ5 37491604
    832414 8ine:U (3.2) BS01 rna ? GO:0002181 ... P61313 37491604
    832415 8ine:U (3.2) BS02 rna ? GO:0002181 ... P61313 37491604
    832416 8ine:V (3.2) BS01 rna ? GO:0002181 ... P40429 37491604
    832417 8ine:W (3.2) BS01 rna ? GO:0002181 ... P83881 37491604
    832418 8ine:X (3.2) BS01 rna ? GO:0002181 ... P61513 37491604
    832419 8ine:Y (3.2) BS01 rna ? GO:0002181 ... P18621 37491604
    832420 8ine:Y (3.2) BS02 rna ? GO:0002181 ... P18621 37491604
    832421 8ine:Z (3.2) BS01 rna ? GO:0002181 ... Q07020 37491604
    832422 8ine:a (3.2) BS01 rna ? GO:0002181 ... P84098 37491604
    832423 8ine:b (3.2) BS01 rna ? GO:0002181 ... Q02543 37491604
    832424 8ine:b (3.2) BS02 rna ? GO:0002181 ... Q02543 37491604
    832425 8ine:c (3.2) BS01 rna ? GO:0001650 ... P46778 37491604
    832426 8ine:c (3.2) BS02 rna ? GO:0001650 ... P46778 37491604
    832427 8ine:d (3.2) BS01 rna ? GO:0002181 ... P35268 37491604
    832428 8ine:e (3.2) BS01 rna ? GO:0000122 ... P62829 37491604
    832429 8ine:g (3.2) BS01 rna ? GO:0002181 ... P62750 37491604
    832430 8ine:g (3.2) BS02 rna ? GO:0002181 ... P62750 37491604
    832431 8ine:h (3.2) BS01 rna ? GO:0002181 ... P61254 37491604
    832432 8ine:h (3.2) BS02 rna ? GO:0002181 ... P61254 37491604
    832433 8ine:i (3.2) BS01 rna ? GO:0002181 ... P61353 37491604
    832434 8ine:j (3.2) BS01 rna ? GO:0002181 ... P62899 37491604
    832435 8ine:k (3.2) BS01 rna ? GO:0002181 ... P62910 37491604
    832436 8ine:l (3.2) BS01 rna ? GO:0002181 ... P46779 37491604
    832437 8ine:m (3.2) BS01 rna ? GO:0002181 ... P62917 37491604
    832438 8ine:n (3.2) BS01 rna ? GO:0002181 ... P18077 37491604
    832439 8ine:o (3.2) BS01 rna ? GO:0002181 ... Q02878 37491604
    832440 8ine:p (3.2) BS01 rna ? GO:0000463 ... P18124 37491604
    832441 8ine:p (3.2) BS02 rna ? GO:0000463 ... P18124 37491604
    832442 8ine:r (3.2) BS01 rna ? GO:0000027 ... P46777 37491604
    832443 8ine:r (3.2) BS02 rna ? GO:0000027 ... P46777 37491604
    832444 8ine:s (3.2) BS01 rna ? GO:0000460 ... O95478 37491604
    832445 8ine:t (3.2) BS01 rna ? GO:0000794 ... Q9BYG3 37491604
    832446 8ine:u (3.2) BS01 rna ? GO:0001649 ... O76021 37491604
    832447 8ine:v (3.2) BS01 rna ? GO:0000463 ... O00541 37491604
    832448 8ine:v (3.2) BS02 rna ? GO:0000463 ... O00541 37491604
    832449 8ine:w (3.2) BS01 rna ? GO:0000027 ... Q9NZM5 37491604
    832450 8ine:y (3.2) BS01 rna ? GO:0002181 ... P30050 37491604
    832451 8ine:z (3.2) BS01 rna ? GO:0003723 ... Q9BRT6 37491604
    832452 8inf:1 (3.0) BS01 rna ? GO:0005515 ... E9PRG8 37491604
    832453 8inf:1 (3.0) BS02 rna ? GO:0005515 ... E9PRG8 37491604
    832454 8inf:3 (3.0) BS01 rna ? GO:0000463 ... Q6DKI1 37491604
    832455 8inf:3 (3.0) BS02 rna ? GO:0000463 ... Q6DKI1 37491604
    832456 8inf:3 (3.0) BS03 rna ? GO:0000463 ... Q6DKI1 37491604
    832457 8inf:4 (3.0) BS01 rna ? GO:0001649 ... Q9BZE4 37491604
    832458 8inf:4 (3.0) BS02 rna ? GO:0001649 ... Q9BZE4 37491604
    832459 8inf:6 (3.0) BS01 rna ? GO:0000054 ... P56537 37491604
    832460 8inf:7 (3.0) BS01 rna ? GO:0003735 ... Q9UHA3 37491604
    832461 8inf:9 (3.0) BS01 rna ? GO:0003676 ... O00488 37491604
    832462 8inf:A (3.0) BS01 rna ? GO:0003723 ... Q13823 37491604
    832463 8inf:A (3.0) BS02 GDP ? GO:0003723 ... Q13823 37491604
    832464 8inf:B (3.0) BS01 rna ? GO:0002181 ... P39023 37491604
    832465 8inf:C (3.0) BS01 rna ? GO:0002181 ... P47914 37491604
    832466 8inf:D (3.0) BS01 rna ? GO:0002181 ... P36578 37491604
    832467 8inf:D (3.0) BS02 rna ? GO:0002181 ... P36578 37491604
    832468 8inf:E (3.0) BS01 rna ? GO:0002181 ... P62888 37491604
    832469 8inf:F (3.0) BS01 rna ? GO:0002181 ... P49207 37491604
    832470 8inf:G (3.0) BS01 rna ? GO:0000470 ... P62424 37491604
    832471 8inf:G (3.0) BS02 rna ? GO:0000470 ... P62424 37491604
    832472 8inf:H (3.0) BS01 rna ? GO:0000463 ... P42766 37491604
    832473 8inf:H (3.0) BS02 rna ? GO:0000463 ... P42766 37491604
    832474 8inf:I (3.0) BS01 rna ? GO:0002181 ... P32969 37491604
    832475 8inf:J (3.0) BS01 rna ? GO:0000027 ... Q9UKD2 37491604
    832476 8inf:K (3.0) BS01 rna ? GO:0002181 ... Q9Y3U8 37491604
    832477 8inf:L (3.0) BS01 rna ? GO:0002181 ... P46776 37491604
    832478 8inf:M (3.0) BS01 rna ? GO:0000448 ... P61927 37491604
    832479 8inf:M (3.0) BS02 rna ? GO:0000448 ... P61927 37491604
    832480 8inf:N (3.0) BS01 rna ? GO:0000027 ... P62913 37491604
    832481 8inf:N (3.0) BS02 rna ? GO:0000027 ... P62913 37491604
    832482 8inf:O (3.0) BS01 rna ? GO:0002181 ... P63173 37491604
    832483 8inf:P (3.0) BS01 rna ? GO:0002181 ... P62891 37491604
    832484 8inf:P (3.0) BS02 rna ? GO:0002181 ... P62891 37491604
    832485 8inf:Q (3.0) BS01 rna ? GO:0002181 ... P26373 37491604
    832486 8inf:Q (3.0) BS02 rna ? GO:0002181 ... P26373 37491604
    832487 8inf:R (3.0) BS01 rna ? GO:0005515 ... Q96EY4 37491604
    832488 8inf:R (3.0) BS02 rna ? GO:0005515 ... Q96EY4 37491604
    832489 8inf:S (3.0) BS01 rna ? GO:0002181 ... P50914 37491604
    832490 8inf:T (3.0) BS01 rna ? N/A Q9UNZ5 37491604
    832491 8inf:U (3.0) BS01 rna ? GO:0002181 ... P61313 37491604
    832492 8inf:U (3.0) BS02 rna ? GO:0002181 ... P61313 37491604
    832493 8inf:V (3.0) BS01 rna ? GO:0002181 ... P40429 37491604
    832494 8inf:W (3.0) BS01 rna ? GO:0002181 ... P83881 37491604
    832495 8inf:X (3.0) BS01 rna ? GO:0002181 ... P61513 37491604
    832496 8inf:Y (3.0) BS01 rna ? GO:0002181 ... P18621 37491604
    832497 8inf:Y (3.0) BS02 rna ? GO:0002181 ... P18621 37491604
    832498 8inf:Z (3.0) BS01 rna ? GO:0002181 ... Q07020 37491604
    832499 8inf:a (3.0) BS01 rna ? GO:0002181 ... P84098 37491604
    832500 8inf:b (3.0) BS01 rna ? GO:0002181 ... Q02543 37491604
    832501 8inf:b (3.0) BS02 rna ? GO:0002181 ... Q02543 37491604
    832502 8inf:c (3.0) BS01 rna ? GO:0001650 ... P46778 37491604
    832503 8inf:d (3.0) BS01 rna ? GO:0002181 ... P35268 37491604
    832504 8inf:e (3.0) BS01 rna ? GO:0000122 ... P62829 37491604
    832505 8inf:f (3.0) BS01 rna ? GO:0000055 ... Q9NVU7 37491604
    832506 8inf:g (3.0) BS01 rna ? GO:0002181 ... P62750 37491604
    832507 8inf:g (3.0) BS02 rna ? GO:0002181 ... P62750 37491604
    832508 8inf:h (3.0) BS01 rna ? GO:0002181 ... P61254 37491604
    832509 8inf:h (3.0) BS02 rna ? GO:0002181 ... P61254 37491604
    832510 8inf:i (3.0) BS01 rna ? GO:0002181 ... P61353 37491604
    832511 8inf:j (3.0) BS01 rna ? GO:0002181 ... P62899 37491604
    832512 8inf:k (3.0) BS01 rna ? GO:0002181 ... P62910 37491604
    832513 8inf:l (3.0) BS01 rna ? GO:0002181 ... P46779 37491604
    832514 8inf:m (3.0) BS01 rna ? GO:0002181 ... P62917 37491604
    832515 8inf:n (3.0) BS01 rna ? GO:0002181 ... P18077 37491604
    832516 8inf:o (3.0) BS01 rna ? GO:0002181 ... Q02878 37491604
    832517 8inf:p (3.0) BS01 rna ? GO:0000463 ... P18124 37491604
    832518 8inf:p (3.0) BS02 rna ? GO:0000463 ... P18124 37491604
    832519 8inf:q (3.0) BS01 rna ? GO:0002181 ... P62906 37491604
    832520 8inf:r (3.0) BS01 rna ? GO:0000027 ... P46777 37491604
    832521 8inf:r (3.0) BS02 rna ? GO:0000027 ... P46777 37491604
    832522 8inf:s (3.0) BS01 rna ? GO:0000460 ... O95478 37491604
    832523 8inf:t (3.0) BS01 rna ? GO:0000794 ... Q9BYG3 37491604
    832524 8inf:u (3.0) BS01 rna ? GO:0001649 ... O76021 37491604
    832525 8inf:v (3.0) BS01 rna ? GO:0000463 ... O00541 37491604
    832526 8inf:v (3.0) BS02 rna ? GO:0000463 ... O00541 37491604
    832527 8inf:w (3.0) BS01 rna ? GO:0000027 ... Q9NZM5 37491604
    832528 8inf:y (3.0) BS01 rna ? GO:0002181 ... P30050 37491604
    832529 8inf:z (3.0) BS01 rna ? GO:0003723 ... Q9BRT6 37491604
    832530 8ing:A (1.98) BS01 NO 1.11.1.7 GO:0004601 ... A0A452E9Y6 N/A
    832531 8ing:A (1.98) BS02 HEM 1.11.1.7 GO:0004601 ... A0A452E9Y6 N/A
    832532 8ing:A (1.98) BS03 CA 1.11.1.7 GO:0004601 ... A0A452E9Y6 N/A
    832533 8ing:A (1.98) BS04 OSM 1.11.1.7 GO:0004601 ... A0A452E9Y6 N/A
    832534 8inh:A (2.5) BS01 UDP 2.4.1.- GO:0008194 ... A0A978UT44 37123177
    832535 8inh:B (2.5) BS01 UDP 2.4.1.- GO:0008194 ... A0A978UT44 37123177
    832536 8inj:A (1.76) BS01 UDP 2.4.1.- GO:0008194 ... W8JMV4 N/A
    832537 8inj:A (1.76) BS02 DTX 2.4.1.- GO:0008194 ... W8JMV4 N/A
    832538 8ink:4 (3.2) BS01 rna ? GO:0001649 ... Q9BZE4 37491604
    832539 8ink:4 (3.2) BS02 rna ? GO:0001649 ... Q9BZE4 37491604
    832540 8ink:6 (3.2) BS01 rna ? GO:0000054 ... P56537 37491604
    832541 8ink:7 (3.2) BS01 rna ? GO:0003735 ... Q9UHA3 37491604
    832542 8ink:9 (3.2) BS01 rna ? GO:0003676 ... O00488 37491604
    832543 8ink:A (3.2) BS01 rna ? GO:0002181 ... P47914 37491604
    832544 8ink:B (3.2) BS01 rna ? GO:0002181 ... P39023 37491604
    832545 8ink:C (3.2) BS01 rna ? GO:0000027 ... P62913 37491604
    832546 8ink:C (3.2) BS02 rna ? GO:0000027 ... P62913 37491604
    832547 8ink:D (3.2) BS01 rna ? GO:0002181 ... P36578 37491604
    832548 8ink:D (3.2) BS02 rna ? GO:0002181 ... P36578 37491604
    832549 8ink:E (3.2) BS01 rna ? GO:0002181 ... P62888 37491604
    832550 8ink:F (3.2) BS01 rna ? GO:0002181 ... P49207 37491604
    832551 8ink:G (3.2) BS01 rna ? GO:0000470 ... P62424 37491604
    832552 8ink:G (3.2) BS02 rna ? GO:0000470 ... P62424 37491604
    832553 8ink:H (3.2) BS01 rna ? GO:0000463 ... P42766 37491604
    832554 8ink:H (3.2) BS02 rna ? GO:0000463 ... P42766 37491604
    832555 8ink:I (3.2) BS01 rna ? GO:0002181 ... P32969 37491604
    832556 8ink:J (3.2) BS01 rna ? GO:0000460 ... O95478 37491604
    832557 8ink:K (3.2) BS01 rna ? GO:0002181 ... Q9Y3U8 37491604
    832558 8ink:L (3.2) BS01 rna ? GO:0002181 ... P46776 37491604
    832559 8ink:M (3.2) BS01 rna ? GO:0000448 ... P61927 37491604
    832560 8ink:M (3.2) BS02 rna ? GO:0000448 ... P61927 37491604
    832561 8ink:N (3.2) BS01 rna ? GO:0000055 ... Q9NVU7 37491604
    832562 8ink:O (3.2) BS01 rna ? GO:0002181 ... P63173 37491604
    832563 8ink:P (3.2) BS01 rna ? GO:0002181 ... P62891 37491604
    832564 8ink:P (3.2) BS02 rna ? GO:0002181 ... P62891 37491604
    832565 8ink:Q (3.2) BS01 rna ? GO:0002181 ... P26373 37491604
    832566 8ink:Q (3.2) BS02 rna ? GO:0002181 ... P26373 37491604
    832567 8ink:R (3.2) BS01 rna ? GO:0000027 ... P46777 37491604
    832568 8ink:R (3.2) BS02 rna ? GO:0000027 ... P46777 37491604
    832569 8ink:S (3.2) BS01 rna ? GO:0002181 ... P50914 37491604
    832570 8ink:T (3.2) BS01 rna ? GO:0001650 ... P46778 37491604
    832571 8ink:T (3.2) BS02 rna ? GO:0001650 ... P46778 37491604
    832572 8ink:U (3.2) BS01 rna ? GO:0002181 ... P61313 37491604
    832573 8ink:U (3.2) BS02 rna ? GO:0002181 ... P61313 37491604
    832574 8ink:V (3.2) BS01 rna ? GO:0002181 ... P40429 37491604
    832575 8ink:W (3.2) BS01 rna ? GO:0005515 ... Q9NVX2 37491604
    832576 8ink:X (3.2) BS01 rna ? GO:0002181 ... P61513 37491604
    832577 8ink:Y (3.2) BS01 rna ? GO:0002181 ... P18621 37491604
    832578 8ink:Y (3.2) BS02 rna ? GO:0002181 ... P18621 37491604
    832579 8ink:Z (3.2) BS01 rna ? GO:0002181 ... Q07020 37491604
    832580 8ink:a (3.2) BS01 rna ? GO:0002181 ... P84098 37491604
    832581 8ink:b (3.2) BS01 rna ? GO:0002181 ... Q02543 37491604
    832582 8ink:b (3.2) BS02 rna ? GO:0002181 ... Q02543 37491604
    832583 8ink:d (3.2) BS01 rna ? GO:0002181 ... P35268 37491604
    832584 8ink:e (3.2) BS01 rna ? GO:0000122 ... P62829 37491604
    832585 8ink:g (3.2) BS01 rna ? GO:0002181 ... P62750 37491604
    832586 8ink:g (3.2) BS02 rna ? GO:0002181 ... P62750 37491604
    832587 8ink:h (3.2) BS01 rna ? GO:0002181 ... P61254 37491604
    832588 8ink:h (3.2) BS02 rna ? GO:0002181 ... P61254 37491604
    832589 8ink:i (3.2) BS01 rna ? GO:0002181 ... P61353 37491604
    832590 8ink:j (3.2) BS01 rna ? GO:0002181 ... P62899 37491604
    832591 8ink:k (3.2) BS01 rna ? GO:0002181 ... P62910 37491604
    832592 8ink:l (3.2) BS01 rna ? GO:0002181 ... P46779 37491604
    832593 8ink:m (3.2) BS01 rna ? GO:0002181 ... P62917 37491604
    832594 8ink:n (3.2) BS01 rna ? GO:0002181 ... P18077 37491604
    832595 8ink:o (3.2) BS01 rna ? GO:0002181 ... Q02878 37491604
    832596 8ink:p (3.2) BS01 rna ? GO:0000463 ... P18124 37491604
    832597 8ink:p (3.2) BS02 rna ? GO:0000463 ... P18124 37491604
    832598 8ink:r (3.2) BS01 rna ? GO:0003723 ... Q9H6F5 37491604
    832599 8ink:r (3.2) BS02 rna ? GO:0003723 ... Q9H6F5 37491604
    832600 8ink:u (3.2) BS01 rna ? GO:0003723 ... Q9BVP2 37491604

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).