SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    833001 8ipa:DA (3.4) BS03 MG ? GO:0002181 ... W5ECL2 38267667
    833002 8ipa:DB (3.4) BS01 rna ? GO:0003723 ... Q7X748 38267667
    833003 8ipa:DB (3.4) BS02 MG ? GO:0003723 ... Q7X748 38267667
    833004 8ipa:EA (3.4) BS01 rna ? GO:0003723 ... A0A3B5XX39 38267667
    833005 8ipa:EA (3.4) BS02 rna ? GO:0003723 ... A0A3B5XX39 38267667
    833006 8ipa:EA (3.4) BS03 rna ? GO:0003723 ... A0A3B5XX39 38267667
    833007 8ipa:EB (3.4) BS01 rna ? GO:0003723 ... A0A3B5ZXX7 38267667
    833008 8ipa:EB (3.4) BS02 rna ? GO:0003723 ... A0A3B5ZXX7 38267667
    833009 8ipa:FA (3.4) BS01 rna ? GO:0002181 ... W5I5G5 38267667
    833010 8ipa:FB (3.4) BS01 rna ? GO:0003729 ... Q5I7L1 38267667
    833011 8ipa:GA (3.4) BS01 rna ? GO:0003735 ... Q5I7K4 38267667
    833012 8ipa:GB (3.4) BS01 rna ? GO:0003735 ... D8L9P6 38267667
    833013 8ipa:GB (3.4) BS02 ZN ? GO:0003735 ... D8L9P6 38267667
    833014 8ipa:HA (3.4) BS01 rna ? GO:0002181 ... W5FEX7 38267667
    833015 8ipa:HA (3.4) BS02 rna ? GO:0002181 ... W5FEX7 38267667
    833016 8ipa:HB (3.4) BS01 rna ? GO:0003735 ... A0A3B6HUM3 38267667
    833017 8ipa:HB (3.4) BS02 rna ? GO:0003735 ... A0A3B6HUM3 38267667
    833018 8ipa:IA (3.4) BS01 rna ? GO:0003735 ... A0A3B6DCS5 38267667
    833019 8ipa:JA (3.4) BS01 rna ? GO:0002181 ... A0A3B6ATQ1 38267667
    833020 8ipa:JB (3.4) BS01 rna ? GO:0003729 ... A0A1D5XNC2 38267667
    833021 8ipa:KA (3.4) BS01 rna ? GO:0003735 ... W5BZZ2 38267667
    833022 8ipa:KA (3.4) BS02 rna ? GO:0003735 ... W5BZZ2 38267667
    833023 8ipa:KB (3.4) BS01 rna ? GO:0003723 ... A0A3B6NJZ9 38267667
    833024 8ipa:KB (3.4) BS02 rna ? GO:0003723 ... A0A3B6NJZ9 38267667
    833025 8ipa:LA (3.4) BS01 rna ? GO:0003723 ... A0A3B6DA12 38267667
    833026 8ipa:LA (3.4) BS02 rna ? GO:0003723 ... A0A3B6DA12 38267667
    833027 8ipa:LB (3.4) BS01 rna ? GO:0003735 ... A0A3B6QGW3 38267667
    833028 8ipa:MA (3.4) BS01 rna ? GO:0002181 ... W5FSM8 38267667
    833029 8ipa:MA (3.4) BS02 rna ? GO:0002181 ... W5FSM8 38267667
    833030 8ipa:MB (3.4) BS01 rna ? GO:0002181 ... A0A0C4BK99 38267667
    833031 8ipa:NA (3.4) BS01 rna ? GO:0003735 ... A0A1D5UQZ5 38267667
    833032 8ipa:NA (3.4) BS02 rna ? GO:0003735 ... A0A1D5UQZ5 38267667
    833033 8ipa:NB (3.4) BS01 rna ? GO:0002181 ... A0A1D5W6Q2 38267667
    833034 8ipa:OA (3.4) BS01 rna ? GO:0002181 ... W5CDW4 38267667
    833035 8ipa:OB (3.4) BS01 rna ? GO:0002181 ... A0A1D5RRD3 38267667
    833036 8ipa:PA (3.4) BS01 rna ? GO:0002181 ... A0A3B6GQI2 38267667
    833037 8ipa:PA (3.4) BS02 rna ? GO:0002181 ... A0A3B6GQI2 38267667
    833038 8ipa:PB (3.4) BS01 rna ? GO:0003735 ... A0A3B6RFY8 38267667
    833039 8ipa:PB (3.4) BS02 MG ? GO:0003735 ... A0A3B6RFY8 38267667
    833040 8ipa:QA (3.4) BS01 rna ? GO:0003735 ... A0A3B5ZZN9 38267667
    833041 8ipa:RA (3.4) BS01 rna ? GO:0003723 ... Q5I7K9 38267667
    833042 8ipa:SA (3.4) BS01 rna ? GO:0002181 ... W5G990 38267667
    833043 8ipa:TA (3.4) BS01 rna ? GO:0003735 ... A0A3B6SDD9 38267667
    833044 8ipa:UA (3.4) BS01 rna ? GO:0000448 ... A0A1D6BC85 38267667
    833045 8ipa:UA (3.4) BS02 rna ? GO:0000448 ... A0A1D6BC85 38267667
    833046 8ipa:VA (3.4) BS01 rna ? GO:0003735 ... M7ZU91 38267667
    833047 8ipa:VA (3.4) BS02 rna ? GO:0003735 ... M7ZU91 38267667
    833048 8ipa:WA (3.4) BS01 rna ? GO:0003735 ... W5HX73 38267667
    833049 8ipa:WA (3.4) BS02 ZN ? GO:0003735 ... W5HX73 38267667
    833050 8ipa:XA (3.4) BS01 rna ? GO:0003723 ... A0A3B6DGT8 38267667
    833051 8ipa:YA (3.4) BS01 rna ? GO:0002181 ... W5D7B8 38267667
    833052 8ipa:YA (3.4) BS02 rna ? GO:0002181 ... W5D7B8 38267667
    833053 8ipa:ZA (3.4) BS01 rna ? GO:0002181 ... A0A3B6C0D4 38267667
    833054 8ipa:ba (3.4) BS01 rna ? GO:0002181 ... A0A3B6PK86 38267667
    833055 8ipa:bb (3.4) BS01 rna ? GO:0003735 ... A0A3B6IU74 38267667
    833056 8ipa:bl (3.4) BS01 rna ? GO:0002184 ... I3NM28 38267667
    833057 8ipa:bl (3.4) BS02 rna ? GO:0002184 ... I3NM28 38267667
    833058 8ipa:bl (3.4) BS03 rna ? GO:0002184 ... I3NM28 38267667
    833059 8ipa:bl (3.4) BS04 rna ? GO:0002184 ... I3NM28 38267667
    833060 8ipa:ca (3.4) BS01 rna ? GO:0002181 ... A0A3B6AYT7 38267667
    833061 8ipa:ca (3.4) BS02 rna ? GO:0002181 ... A0A3B6AYT7 38267667
    833062 8ipa:cb (3.4) BS01 rna ? GO:0000447 ... W5EL62 38267667
    833063 8ipa:da (3.4) BS01 rna ? GO:0003723 ... W5AUH7 38267667
    833064 8ipa:db (3.4) BS01 rna ? GO:0003729 ... A0A3B6LWE1 38267667
    833065 8ipa:db (3.4) BS02 ZN ? GO:0003729 ... A0A3B6LWE1 38267667
    833066 8ipa:eb (3.4) BS01 rna ? GO:0003723 ... W5FPA7 38267667
    833067 8ipa:fb (3.4) BS01 rna ? GO:0003723 ... A0A3B6LVN2 38267667
    833068 8ipa:ga (3.4) BS01 rna ? GO:0003735 ... W5FV77 38267667
    833069 8ipa:gb (3.4) BS01 rna ? GO:0003735 ... A0A2X0SLI3 38267667
    833070 8ipa:ha (3.4) BS01 rna ? GO:0005080 ... W5D4F5 38267667
    833071 8ipa:hb (3.4) BS01 rna ? GO:0003735 ... Q5I7K2 38267667
    833072 8ipa:ia (3.4) BS01 rna ? GO:0003723 ... Q8L804 38267667
    833073 8ipa:ib (3.4) BS01 rna ? GO:0003729 ... W5BFB7 38267667
    833074 8ipa:ja (3.4) BS01 rna ? GO:0003723 ... A0A1D5SLI4 38267667
    833075 8ipa:ka (3.4) BS01 rna ? GO:0003723 ... A0A9R1JSD6 38267667
    833076 8ipa:la (3.4) BS01 rna ? GO:0000462 ... A0A3B6HX49 38267667
    833077 8ipa:ma (3.4) BS01 rna ? GO:0003735 ... U5HTD8 38267667
    833078 8ipa:na (3.4) BS01 rna ? GO:0000028 ... A0A3B6SS17 38267667
    833079 8ipa:oa (3.4) BS01 rna ? GO:0003676 ... Q8L806 38267667
    833080 8ipa:pa (3.4) BS01 rna ? GO:0003735 ... Q5XUU9 38267667
    833081 8ipa:pa (3.4) BS02 rna ? GO:0003735 ... Q5XUU9 38267667
    833082 8ipa:qa (3.4) BS01 rna ? GO:0003729 ... A0A3B5YWZ3 38267667
    833083 8ipa:ra (3.4) BS01 rna ? GO:0003735 ... W5FWF5 38267667
    833084 8ipa:sa (3.4) BS01 rna ? GO:0003723 ... W5ASA4 38267667
    833085 8ipa:ta (3.4) BS01 rna ? GO:0003735 ... W5EP45 38267667
    833086 8ipa:ua (3.4) BS01 rna ? GO:0003735 ... Q7X9K4 38267667
    833087 8ipa:va (3.4) BS01 rna ? GO:0003735 ... A0A077RZD1 38267667
    833088 8ipa:wa (3.4) BS01 rna ? GO:0002181 ... Q5I7K3 38267667
    833089 8ipa:wa (3.4) BS02 ZN ? GO:0002181 ... Q5I7K3 38267667
    833090 8ipa:xa (3.4) BS01 rna ? GO:0003735 ... A0A341UET3 38267667
    833091 8ipa:ya (3.4) BS01 rna ? GO:0003735 ... A0A3B6S9M7 38267667
    833092 8ipa:za (3.4) BS01 rna ? GO:0000028 ... W5E2W7 38267667
    833093 8ipb:AA (3.4) BS01 rna ? GO:0000470 ... A0A3B6RED0 38267667
    833094 8ipb:AA (3.4) BS02 rna ? GO:0000470 ... A0A3B6RED0 38267667
    833095 8ipb:AB (3.4) BS01 rna ? GO:0003735 ... A0A9R1H1R6 38267667
    833096 8ipb:BA (3.4) BS01 rna ? GO:0003735 ... A0A9R1HBE9 38267667
    833097 8ipb:BA (3.4) BS02 rna ? GO:0003735 ... A0A9R1HBE9 38267667
    833098 8ipb:BB (3.4) BS01 rna ? GO:0000463 ... Q8L805 38267667
    833099 8ipb:BB (3.4) BS02 rna ? GO:0000463 ... Q8L805 38267667
    833100 8ipb:CA (3.4) BS01 rna ? GO:0003735 ... A0A341XZK6 38267667
    833101 8ipb:CB (3.4) BS01 rna ? GO:0000463 ... A0A3B6DM38 38267667
    833102 8ipb:CB (3.4) BS02 rna ? GO:0000463 ... A0A3B6DM38 38267667
    833103 8ipb:DA (3.4) BS01 rna ? GO:0002181 ... W5ECL2 38267667
    833104 8ipb:DA (3.4) BS02 rna ? GO:0002181 ... W5ECL2 38267667
    833105 8ipb:DA (3.4) BS03 MG ? GO:0002181 ... W5ECL2 38267667
    833106 8ipb:DB (3.4) BS01 rna ? GO:0003723 ... Q7X748 38267667
    833107 8ipb:EA (3.4) BS01 rna ? GO:0003723 ... A0A3B5XX39 38267667
    833108 8ipb:EA (3.4) BS02 rna ? GO:0003723 ... A0A3B5XX39 38267667
    833109 8ipb:EA (3.4) BS03 rna ? GO:0003723 ... A0A3B5XX39 38267667
    833110 8ipb:EB (3.4) BS01 rna ? GO:0003723 ... A0A3B5ZXX7 38267667
    833111 8ipb:EB (3.4) BS02 rna ? GO:0003723 ... A0A3B5ZXX7 38267667
    833112 8ipb:FA (3.4) BS01 rna ? GO:0002181 ... W5I5G5 38267667
    833113 8ipb:FB (3.4) BS01 rna ? GO:0003729 ... Q5I7L1 38267667
    833114 8ipb:GA (3.4) BS01 rna ? GO:0003735 ... Q5I7K4 38267667
    833115 8ipb:GB (3.4) BS01 rna ? GO:0003735 ... D8L9P6 38267667
    833116 8ipb:GB (3.4) BS02 ZN ? GO:0003735 ... D8L9P6 38267667
    833117 8ipb:HA (3.4) BS01 rna ? GO:0002181 ... W5FEX7 38267667
    833118 8ipb:HA (3.4) BS02 rna ? GO:0002181 ... W5FEX7 38267667
    833119 8ipb:HB (3.4) BS01 rna ? GO:0003735 ... A0A3B6HUM3 38267667
    833120 8ipb:HB (3.4) BS02 rna ? GO:0003735 ... A0A3B6HUM3 38267667
    833121 8ipb:IA (3.4) BS01 rna ? GO:0003735 ... A0A3B6DCS5 38267667
    833122 8ipb:JA (3.4) BS01 rna ? GO:0002181 ... A0A3B6ATQ1 38267667
    833123 8ipb:JB (3.4) BS01 rna ? GO:0003729 ... A0A1D5XNC2 38267667
    833124 8ipb:KA (3.4) BS01 rna ? GO:0003735 ... W5BZZ2 38267667
    833125 8ipb:KA (3.4) BS02 rna ? GO:0003735 ... W5BZZ2 38267667
    833126 8ipb:KB (3.4) BS01 rna ? GO:0003723 ... A0A3B6NJZ9 38267667
    833127 8ipb:KB (3.4) BS02 rna ? GO:0003723 ... A0A3B6NJZ9 38267667
    833128 8ipb:LA (3.4) BS01 rna ? GO:0003723 ... A0A3B6DA12 38267667
    833129 8ipb:LA (3.4) BS02 rna ? GO:0003723 ... A0A3B6DA12 38267667
    833130 8ipb:LB (3.4) BS01 rna ? GO:0003735 ... A0A3B6QGW3 38267667
    833131 8ipb:MA (3.4) BS01 rna ? GO:0002181 ... W5FSM8 38267667
    833132 8ipb:MA (3.4) BS02 rna ? GO:0002181 ... W5FSM8 38267667
    833133 8ipb:MB (3.4) BS01 rna ? GO:0002181 ... A0A0C4BK99 38267667
    833134 8ipb:NA (3.4) BS01 rna ? GO:0003735 ... A0A1D5UQZ5 38267667
    833135 8ipb:NA (3.4) BS02 rna ? GO:0003735 ... A0A1D5UQZ5 38267667
    833136 8ipb:NB (3.4) BS01 rna ? GO:0002181 ... A0A1D5W6Q2 38267667
    833137 8ipb:OA (3.4) BS01 rna ? GO:0002181 ... W5CDW4 38267667
    833138 8ipb:OB (3.4) BS01 rna ? GO:0002181 ... A0A1D5RRD3 38267667
    833139 8ipb:PA (3.4) BS01 rna ? GO:0002181 ... A0A3B6GQI2 38267667
    833140 8ipb:PA (3.4) BS02 rna ? GO:0002181 ... A0A3B6GQI2 38267667
    833141 8ipb:PB (3.4) BS01 rna ? GO:0003735 ... A0A3B6RFY8 38267667
    833142 8ipb:PB (3.4) BS02 MG ? GO:0003735 ... A0A3B6RFY8 38267667
    833143 8ipb:QA (3.4) BS01 rna ? GO:0003735 ... A0A3B5ZZN9 38267667
    833144 8ipb:RA (3.4) BS01 rna ? GO:0003723 ... Q5I7K9 38267667
    833145 8ipb:SA (3.4) BS01 rna ? GO:0002181 ... W5G990 38267667
    833146 8ipb:TA (3.4) BS01 rna ? GO:0003735 ... A0A3B6SDD9 38267667
    833147 8ipb:UA (3.4) BS01 rna ? GO:0000448 ... A0A1D6BC85 38267667
    833148 8ipb:UA (3.4) BS02 rna ? GO:0000448 ... A0A1D6BC85 38267667
    833149 8ipb:VA (3.4) BS01 rna ? GO:0002181 ... Q5I7K7 38267667
    833150 8ipb:VA (3.4) BS02 rna ? GO:0002181 ... Q5I7K7 38267667
    833151 8ipb:WA (3.4) BS01 rna ? GO:0003735 ... W5HX73 38267667
    833152 8ipb:WA (3.4) BS02 ZN ? GO:0003735 ... W5HX73 38267667
    833153 8ipb:XA (3.4) BS01 rna ? GO:0003723 ... A0A3B6DGT8 38267667
    833154 8ipb:YA (3.4) BS01 rna ? GO:0002181 ... W5D7B8 38267667
    833155 8ipb:YA (3.4) BS02 rna ? GO:0002181 ... W5D7B8 38267667
    833156 8ipb:ZA (3.4) BS01 rna ? GO:0002181 ... A0A3B6C0D4 38267667
    833157 8ipb:ba (3.4) BS01 rna ? GO:0002181 ... A0A3B6PK86 38267667
    833158 8ipb:bb (3.4) BS01 rna ? GO:0003735 ... A0A3B6IU74 38267667
    833159 8ipb:ca (3.4) BS01 rna ? GO:0002181 ... A0A3B6AYT7 38267667
    833160 8ipb:ca (3.4) BS02 rna ? GO:0002181 ... A0A3B6AYT7 38267667
    833161 8ipb:da (3.4) BS01 rna ? GO:0003723 ... W5AUH7 38267667
    833162 8ipb:db (3.4) BS01 rna ? GO:0003729 ... A0A3B6LWE1 38267667
    833163 8ipb:db (3.4) BS02 ZN ? GO:0003729 ... A0A3B6LWE1 38267667
    833164 8ipb:eb (3.4) BS01 rna ? GO:0003723 ... W5FPA7 38267667
    833165 8ipb:fb (3.4) BS01 rna ? GO:0003723 ... A0A3B6LVN2 38267667
    833166 8ipb:ga (3.4) BS01 rna ? GO:0003735 ... W5FV77 38267667
    833167 8ipb:gb (3.4) BS01 rna ? GO:0003735 ... A0A2X0SLI3 38267667
    833168 8ipb:ha (3.4) BS01 rna ? GO:0005080 ... W5D4F5 38267667
    833169 8ipb:hb (3.4) BS01 rna ? GO:0003735 ... Q5I7K2 38267667
    833170 8ipb:ia (3.4) BS01 rna ? GO:0003723 ... Q8L804 38267667
    833171 8ipb:ib (3.4) BS01 rna ? GO:0003729 ... W5BFB7 38267667
    833172 8ipb:ja (3.4) BS01 rna ? GO:0003723 ... A0A1D5SLI4 38267667
    833173 8ipb:ka (3.4) BS01 rna ? GO:0003723 ... A0A9R1JSD6 38267667
    833174 8ipb:ka (3.4) BS02 MG ? GO:0003723 ... A0A9R1JSD6 38267667
    833175 8ipb:la (3.4) BS01 rna ? GO:0000462 ... A0A3B6HX49 38267667
    833176 8ipb:ma (3.4) BS01 rna ? GO:0003735 ... U5HTD8 38267667
    833177 8ipb:na (3.4) BS01 rna ? GO:0000028 ... A0A3B6SS17 38267667
    833178 8ipb:oa (3.4) BS01 rna ? GO:0003676 ... Q8L806 38267667
    833179 8ipb:pa (3.4) BS01 rna ? GO:0003735 ... Q5XUU9 38267667
    833180 8ipb:pa (3.4) BS02 rna ? GO:0003735 ... Q5XUU9 38267667
    833181 8ipb:qa (3.4) BS01 rna ? GO:0003729 ... A0A3B5YWZ3 38267667
    833182 8ipb:ra (3.4) BS01 rna ? GO:0003735 ... W5FWF5 38267667
    833183 8ipb:sa (3.4) BS01 rna ? GO:0003723 ... W5ASA4 38267667
    833184 8ipb:ta (3.4) BS01 rna ? GO:0003735 ... W5EP45 38267667
    833185 8ipb:ua (3.4) BS01 rna ? GO:0003735 ... Q7X9K4 38267667
    833186 8ipb:va (3.4) BS01 rna ? GO:0003735 ... A0A077RZD1 38267667
    833187 8ipb:wa (3.4) BS01 rna ? GO:0002181 ... Q5I7K3 38267667
    833188 8ipb:wa (3.4) BS02 ZN ? GO:0002181 ... Q5I7K3 38267667
    833189 8ipb:xa (3.4) BS01 rna ? GO:0003735 ... W5HZ68 38267667
    833190 8ipb:ya (3.4) BS01 rna ? GO:0003735 ... A0A3B6S9M7 38267667
    833191 8ipb:za (3.4) BS01 rna ? GO:0000028 ... W5E2W7 38267667
    833192 8ipd:4 (3.2) BS01 rna ? GO:0001649 ... Q9BZE4 37491604
    833193 8ipd:4 (3.2) BS02 rna ? GO:0001649 ... Q9BZE4 37491604
    833194 8ipd:6 (3.2) BS01 rna ? GO:0000054 ... P56537 37491604
    833195 8ipd:7 (3.2) BS01 rna ? GO:0003735 ... Q9UHA3 37491604
    833196 8ipd:9 (3.2) BS01 rna ? GO:0003676 ... O00488 37491604
    833197 8ipd:A (3.2) BS01 rna ? GO:0002181 ... P47914 37491604
    833198 8ipd:B (3.2) BS01 rna ? GO:0002181 ... P39023 37491604
    833199 8ipd:C (3.2) BS01 rna ? GO:0000027 ... P62913 37491604
    833200 8ipd:C (3.2) BS02 rna ? GO:0000027 ... P62913 37491604

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).