SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    833201 8ipd:D (3.2) BS01 rna ? GO:0002181 ... P36578 37491604
    833202 8ipd:D (3.2) BS02 rna ? GO:0002181 ... P36578 37491604
    833203 8ipd:E (3.2) BS01 rna ? GO:0002181 ... P62888 37491604
    833204 8ipd:F (3.2) BS01 rna ? GO:0002181 ... P49207 37491604
    833205 8ipd:G (3.2) BS01 rna ? GO:0000470 ... P62424 37491604
    833206 8ipd:G (3.2) BS02 rna ? GO:0000470 ... P62424 37491604
    833207 8ipd:H (3.2) BS01 rna ? GO:0000463 ... P42766 37491604
    833208 8ipd:H (3.2) BS02 rna ? GO:0000463 ... P42766 37491604
    833209 8ipd:I (3.2) BS01 rna ? GO:0002181 ... P32969 37491604
    833210 8ipd:J (3.2) BS01 rna ? GO:0000460 ... O95478 37491604
    833211 8ipd:K (3.2) BS01 rna ? GO:0002181 ... Q9Y3U8 37491604
    833212 8ipd:L (3.2) BS01 rna ? GO:0002181 ... P46776 37491604
    833213 8ipd:M (3.2) BS01 rna ? GO:0000448 ... P61927 37491604
    833214 8ipd:M (3.2) BS02 rna ? GO:0000448 ... P61927 37491604
    833215 8ipd:O (3.2) BS01 rna ? GO:0002181 ... P63173 37491604
    833216 8ipd:P (3.2) BS01 rna ? GO:0002181 ... P62891 37491604
    833217 8ipd:P (3.2) BS02 rna ? GO:0002181 ... P62891 37491604
    833218 8ipd:Q (3.2) BS01 rna ? GO:0002181 ... P26373 37491604
    833219 8ipd:Q (3.2) BS02 rna ? GO:0002181 ... P26373 37491604
    833220 8ipd:R (3.2) BS01 rna ? GO:0000027 ... P46777 37491604
    833221 8ipd:R (3.2) BS02 rna ? GO:0000027 ... P46777 37491604
    833222 8ipd:S (3.2) BS01 rna ? GO:0002181 ... P50914 37491604
    833223 8ipd:T (3.2) BS01 rna ? GO:0001650 ... P46778 37491604
    833224 8ipd:T (3.2) BS02 rna ? GO:0001650 ... P46778 37491604
    833225 8ipd:U (3.2) BS01 rna ? GO:0002181 ... P61313 37491604
    833226 8ipd:U (3.2) BS02 rna ? GO:0002181 ... P61313 37491604
    833227 8ipd:V (3.2) BS01 rna ? GO:0002181 ... P40429 37491604
    833228 8ipd:X (3.2) BS01 rna ? GO:0002181 ... P61513 37491604
    833229 8ipd:Y (3.2) BS01 rna ? GO:0002181 ... P18621 37491604
    833230 8ipd:Y (3.2) BS02 rna ? GO:0002181 ... P18621 37491604
    833231 8ipd:Z (3.2) BS01 rna ? GO:0002181 ... Q07020 37491604
    833232 8ipd:a (3.2) BS01 rna ? GO:0002181 ... P84098 37491604
    833233 8ipd:b (3.2) BS01 rna ? GO:0002181 ... Q02543 37491604
    833234 8ipd:b (3.2) BS02 rna ? GO:0002181 ... Q02543 37491604
    833235 8ipd:d (3.2) BS01 rna ? GO:0002181 ... P35268 37491604
    833236 8ipd:e (3.2) BS01 rna ? GO:0000122 ... P62829 37491604
    833237 8ipd:g (3.2) BS01 rna ? GO:0002181 ... P62750 37491604
    833238 8ipd:g (3.2) BS02 rna ? GO:0002181 ... P62750 37491604
    833239 8ipd:h (3.2) BS01 rna ? GO:0002181 ... P61254 37491604
    833240 8ipd:h (3.2) BS02 rna ? GO:0002181 ... P61254 37491604
    833241 8ipd:i (3.2) BS01 rna ? GO:0002181 ... P61353 37491604
    833242 8ipd:j (3.2) BS01 rna ? GO:0002181 ... P62899 37491604
    833243 8ipd:k (3.2) BS01 rna ? GO:0002181 ... P62910 37491604
    833244 8ipd:l (3.2) BS01 rna ? GO:0002181 ... P46779 37491604
    833245 8ipd:m (3.2) BS01 rna ? GO:0002181 ... P62917 37491604
    833246 8ipd:n (3.2) BS01 rna ? GO:0002181 ... P18077 37491604
    833247 8ipd:o (3.2) BS01 rna ? GO:0002181 ... Q02878 37491604
    833248 8ipd:p (3.2) BS01 rna ? GO:0000463 ... P18124 37491604
    833249 8ipd:p (3.2) BS02 rna ? GO:0000463 ... P18124 37491604
    833250 8ipd:r (3.2) BS01 rna ? GO:0003723 ... Q9H6F5 37491604
    833251 8ipd:r (3.2) BS02 rna ? GO:0003723 ... Q9H6F5 37491604
    833252 8ipd:u (3.2) BS01 rna ? GO:0003723 ... Q9BVP2 37491604
    833253 8ipd:u (3.2) BS02 rna ? GO:0003723 ... Q9BVP2 37491604
    833254 8ipd:v (3.2) BS01 rna ? GO:0000027 ... Q9UKD2 37491604
    833255 8ipd:w (3.2) BS01 rna ? GO:0003723 ... Q13823 37491604
    833256 8ipd:w (3.2) BS02 GTP ? GO:0003723 ... Q13823 37491604
    833257 8ipd:y (3.2) BS01 rna ? GO:0002181 ... P30050 37491604
    833258 8ipd:z (3.2) BS01 rna ? GO:0003723 ... Q9BRT6 37491604
    833259 8ipj:A (2.003) BS01 AR6 ? N/A Q5ZSJ1 39009586
    833260 8ipj:B (2.003) BS01 AR6 ? N/A P62987 39009586
    833261 8ipk:A (1.9) BS01 SAM 2.1.1.- GO:0008168 ... A6NJ78 38291322
    833262 8ipl:A (2.2) BS01 peptide 2.1.1.- GO:0008168 ... A6NJ78 38291322
    833263 8ipl:A (2.2) BS02 SAM 2.1.1.- GO:0008168 ... A6NJ78 38291322
    833264 8ipm:D (3.1) BS01 peptide 2.1.1.- GO:0008168 ... A6NJ78 38291322
    833265 8ipm:D (3.1) BS02 rna 2.1.1.- GO:0008168 ... A6NJ78 38291322
    833266 8ipm:D (3.1) BS03 SFG 2.1.1.- GO:0008168 ... A6NJ78 38291322
    833267 8ipp:B (2.007) BS01 dna N/A N/A N/A 38738955
    833268 8ipp:B (2.007) BS02 MG N/A N/A N/A 38738955
    833269 8ipp:B (2.007) BS03 MG N/A N/A N/A 38738955
    833270 8ipr:A (3.0) BS01 ATP ? GO:0005524 ... A4ZHS8 37144855
    833271 8ipr:A (3.0) BS02 ATP ? GO:0005524 ... A4ZHS8 37144855
    833272 8ipr:C (3.0) BS01 ATP 3.6.3.25 GO:0005524 ... A0QXA6 37144855
    833273 8ipr:C (3.0) BS02 MG 3.6.3.25 GO:0005524 ... A0QXA6 37144855
    833274 8ipr:C (3.0) BS03 ATP 3.6.3.25 GO:0005524 ... A0QXA6 37144855
    833275 8ipr:D (3.0) BS01 ATP ? GO:0005524 ... A4ZHS8 37144855
    833276 8ipr:D (3.0) BS02 ATP ? GO:0005524 ... A4ZHS8 37144855
    833277 8ipr:E (3.0) BS01 ATP 3.6.3.25 GO:0005524 ... A0QXA6 37144855
    833278 8ipr:E (3.0) BS02 MG 3.6.3.25 GO:0005524 ... A0QXA6 37144855
    833279 8ipr:E (3.0) BS03 ATP 3.6.3.25 GO:0005524 ... A0QXA6 37144855
    833280 8ips:A (3.6) BS01 HEM 7.4.2.- GO:0005524 ... P23886 37144855
    833281 8ips:B (3.6) BS01 HEM 7.4.2.- GO:0005524 ... P29018 37144855
    833282 8ipt:A (3.5) BS01 ATP 7.4.2.- GO:0005524 ... P29018 37144855
    833283 8ipt:A (3.5) BS02 ATP 7.4.2.- GO:0005524 ... P29018 37144855
    833284 8ipt:C (3.5) BS01 ATP 7.4.2.- GO:0005524 ... P23886 37144855
    833285 8ipt:C (3.5) BS02 ATP 7.4.2.- GO:0005524 ... P23886 37144855
    833286 8ipt:D (3.5) BS01 ATP 7.4.2.- GO:0005524 ... P23886 37144855
    833287 8ipt:D (3.5) BS02 ATP 7.4.2.- GO:0005524 ... P23886 37144855
    833288 8ipt:E (3.5) BS01 ATP 7.4.2.- GO:0005524 ... P29018 37144855
    833289 8ipt:E (3.5) BS02 ATP 7.4.2.- GO:0005524 ... P29018 37144855
    833290 8ipw:A (2.35) BS01 AR6 ? N/A Q5ZSJ1 39009586
    833291 8ipw:B (2.35) BS01 AR6 ? N/A Q5ZSJ1 39009586
    833292 8ipx:1 (4.3) BS01 rna ? GO:0000463 ... Q6DKI1 37491604
    833293 8ipx:1 (4.3) BS02 rna ? GO:0000463 ... Q6DKI1 37491604
    833294 8ipx:4 (4.3) BS01 rna ? GO:0001649 ... Q9BZE4 37491604
    833295 8ipx:4 (4.3) BS02 rna ? GO:0001649 ... Q9BZE4 37491604
    833296 8ipx:6 (4.3) BS01 rna ? GO:0000054 ... P56537 37491604
    833297 8ipx:7 (4.3) BS01 rna ? GO:0003735 ... Q9UHA3 37491604
    833298 8ipx:9 (4.3) BS01 rna ? GO:0003676 ... O00488 37491604
    833299 8ipx:A (4.3) BS01 rna ? GO:0002181 ... P47914 37491604
    833300 8ipx:B (4.3) BS01 rna ? GO:0002181 ... P39023 37491604
    833301 8ipx:C (4.3) BS01 rna ? GO:0000027 ... P62913 37491604
    833302 8ipx:C (4.3) BS02 rna ? GO:0000027 ... P62913 37491604
    833303 8ipx:D (4.3) BS01 rna ? GO:0002181 ... P36578 37491604
    833304 8ipx:D (4.3) BS02 rna ? GO:0002181 ... P36578 37491604
    833305 8ipx:E (4.3) BS01 rna ? GO:0002181 ... P62888 37491604
    833306 8ipx:F (4.3) BS01 rna ? GO:0002181 ... P49207 37491604
    833307 8ipx:G (4.3) BS01 rna ? GO:0000470 ... P62424 37491604
    833308 8ipx:G (4.3) BS02 rna ? GO:0000470 ... P62424 37491604
    833309 8ipx:H (4.3) BS01 rna ? GO:0000463 ... P42766 37491604
    833310 8ipx:H (4.3) BS02 rna ? GO:0000463 ... P42766 37491604
    833311 8ipx:I (4.3) BS01 rna ? GO:0002181 ... P32969 37491604
    833312 8ipx:J (4.3) BS01 rna ? GO:0000460 ... O95478 37491604
    833313 8ipx:K (4.3) BS01 rna ? GO:0002181 ... Q9Y3U8 37491604
    833314 8ipx:L (4.3) BS01 rna ? GO:0002181 ... P46776 37491604
    833315 8ipx:M (4.3) BS01 rna ? GO:0000448 ... P61927 37491604
    833316 8ipx:M (4.3) BS02 rna ? GO:0000448 ... P61927 37491604
    833317 8ipx:N (4.3) BS01 rna ? GO:0001649 ... O76021 37491604
    833318 8ipx:O (4.3) BS01 rna ? GO:0002181 ... P63173 37491604
    833319 8ipx:P (4.3) BS01 rna ? GO:0002181 ... P62891 37491604
    833320 8ipx:P (4.3) BS02 rna ? GO:0002181 ... P62891 37491604
    833321 8ipx:Q (4.3) BS01 rna ? GO:0002181 ... P26373 37491604
    833322 8ipx:Q (4.3) BS02 rna ? GO:0002181 ... P26373 37491604
    833323 8ipx:R (4.3) BS01 rna ? GO:0000027 ... P46777 37491604
    833324 8ipx:R (4.3) BS02 rna ? GO:0000027 ... P46777 37491604
    833325 8ipx:S (4.3) BS01 rna ? GO:0002181 ... P50914 37491604
    833326 8ipx:T (4.3) BS01 rna ? GO:0001650 ... P46778 37491604
    833327 8ipx:T (4.3) BS02 rna ? GO:0001650 ... P46778 37491604
    833328 8ipx:U (4.3) BS01 rna ? GO:0002181 ... P61313 37491604
    833329 8ipx:U (4.3) BS02 rna ? GO:0002181 ... P61313 37491604
    833330 8ipx:V (4.3) BS01 rna ? GO:0002181 ... P40429 37491604
    833331 8ipx:W (4.3) BS01 rna ? GO:0005515 ... Q9NVX2 37491604
    833332 8ipx:X (4.3) BS01 rna ? GO:0002181 ... P61513 37491604
    833333 8ipx:Y (4.3) BS01 rna ? GO:0002181 ... P18621 37491604
    833334 8ipx:Y (4.3) BS02 rna ? GO:0002181 ... P18621 37491604
    833335 8ipx:Z (4.3) BS01 rna ? GO:0002181 ... Q07020 37491604
    833336 8ipx:a (4.3) BS01 rna ? GO:0002181 ... P84098 37491604
    833337 8ipx:b (4.3) BS01 rna ? GO:0002181 ... Q02543 37491604
    833338 8ipx:b (4.3) BS02 rna ? GO:0002181 ... Q02543 37491604
    833339 8ipx:d (4.3) BS01 rna ? GO:0002181 ... P35268 37491604
    833340 8ipx:e (4.3) BS01 rna ? GO:0000122 ... P62829 37491604
    833341 8ipx:f (4.3) BS01 rna ? GO:0000027 ... Q9NZM5 37491604
    833342 8ipx:f (4.3) BS02 rna ? GO:0000027 ... Q9NZM5 37491604
    833343 8ipx:g (4.3) BS01 rna ? GO:0002181 ... P62750 37491604
    833344 8ipx:g (4.3) BS02 rna ? GO:0002181 ... P62750 37491604
    833345 8ipx:h (4.3) BS01 rna ? GO:0002181 ... P61254 37491604
    833346 8ipx:h (4.3) BS02 rna ? GO:0002181 ... P61254 37491604
    833347 8ipx:i (4.3) BS01 rna ? GO:0002181 ... P61353 37491604
    833348 8ipx:j (4.3) BS01 rna ? GO:0002181 ... P62899 37491604
    833349 8ipx:k (4.3) BS01 rna ? GO:0002181 ... P62910 37491604
    833350 8ipx:l (4.3) BS01 rna ? GO:0002181 ... P46779 37491604
    833351 8ipx:m (4.3) BS01 rna ? GO:0002181 ... P62917 37491604
    833352 8ipx:n (4.3) BS01 rna ? GO:0002181 ... P18077 37491604
    833353 8ipx:o (4.3) BS01 rna ? GO:0002181 ... Q02878 37491604
    833354 8ipx:p (4.3) BS01 rna ? GO:0000463 ... P18124 37491604
    833355 8ipx:p (4.3) BS02 rna ? GO:0000463 ... P18124 37491604
    833356 8ipx:q (4.3) BS01 rna ? GO:0000463 ... O00541 37491604
    833357 8ipx:q (4.3) BS02 rna ? GO:0000463 ... O00541 37491604
    833358 8ipx:r (4.3) BS01 rna ? GO:0003723 ... Q9H6F5 37491604
    833359 8ipx:r (4.3) BS02 rna ? GO:0003723 ... Q9H6F5 37491604
    833360 8ipx:t (4.3) BS01 rna ? GO:0000794 ... Q9BYG3 37491604
    833361 8ipx:u (4.3) BS01 rna ? GO:0003723 ... Q9BVP2 37491604
    833362 8ipx:v (4.3) BS01 rna ? GO:0000027 ... Q9UKD2 37491604
    833363 8ipx:w (4.3) BS01 rna ? GO:0003723 ... Q13823 37491604
    833364 8ipx:w (4.3) BS02 GTP ? GO:0003723 ... Q13823 37491604
    833365 8ipx:y (4.3) BS01 rna ? GO:0002181 ... P30050 37491604
    833366 8ipx:z (4.3) BS01 rna ? GO:0003723 ... Q9BRT6 37491604
    833367 8ipy:1 (3.2) BS01 rna ? GO:0000463 ... Q6DKI1 37491604
    833368 8ipy:1 (3.2) BS02 rna ? GO:0000463 ... Q6DKI1 37491604
    833369 8ipy:4 (3.2) BS01 rna ? GO:0001649 ... Q9BZE4 37491604
    833370 8ipy:4 (3.2) BS02 rna ? GO:0001649 ... Q9BZE4 37491604
    833371 8ipy:6 (3.2) BS01 rna ? GO:0000054 ... P56537 37491604
    833372 8ipy:7 (3.2) BS01 rna ? GO:0003735 ... Q9UHA3 37491604
    833373 8ipy:9 (3.2) BS01 rna ? GO:0003676 ... O00488 37491604
    833374 8ipy:A (3.2) BS01 rna ? GO:0002181 ... P47914 37491604
    833375 8ipy:B (3.2) BS01 rna ? GO:0002181 ... P39023 37491604
    833376 8ipy:C (3.2) BS01 rna ? GO:0000027 ... P62913 37491604
    833377 8ipy:C (3.2) BS02 rna ? GO:0000027 ... P62913 37491604
    833378 8ipy:D (3.2) BS01 rna ? GO:0002181 ... P36578 37491604
    833379 8ipy:D (3.2) BS02 rna ? GO:0002181 ... P36578 37491604
    833380 8ipy:E (3.2) BS01 rna ? GO:0002181 ... P62888 37491604
    833381 8ipy:F (3.2) BS01 rna ? GO:0002181 ... P49207 37491604
    833382 8ipy:G (3.2) BS01 rna ? GO:0000470 ... P62424 37491604
    833383 8ipy:G (3.2) BS02 rna ? GO:0000470 ... P62424 37491604
    833384 8ipy:H (3.2) BS01 rna ? GO:0000463 ... P42766 37491604
    833385 8ipy:H (3.2) BS02 rna ? GO:0000463 ... P42766 37491604
    833386 8ipy:I (3.2) BS01 rna ? GO:0002181 ... P32969 37491604
    833387 8ipy:J (3.2) BS01 rna ? GO:0000460 ... O95478 37491604
    833388 8ipy:K (3.2) BS01 rna ? GO:0002181 ... Q9Y3U8 37491604
    833389 8ipy:L (3.2) BS01 rna ? GO:0002181 ... P46776 37491604
    833390 8ipy:M (3.2) BS01 rna ? GO:0000448 ... P61927 37491604
    833391 8ipy:M (3.2) BS02 rna ? GO:0000448 ... P61927 37491604
    833392 8ipy:N (3.2) BS01 rna ? GO:0000055 ... Q9NVU7 37491604
    833393 8ipy:O (3.2) BS01 rna ? GO:0002181 ... P63173 37491604
    833394 8ipy:P (3.2) BS01 rna ? GO:0002181 ... P62891 37491604
    833395 8ipy:P (3.2) BS02 rna ? GO:0002181 ... P62891 37491604
    833396 8ipy:Q (3.2) BS01 rna ? GO:0002181 ... P26373 37491604
    833397 8ipy:Q (3.2) BS02 rna ? GO:0002181 ... P26373 37491604
    833398 8ipy:R (3.2) BS01 rna ? GO:0000027 ... P46777 37491604
    833399 8ipy:R (3.2) BS02 rna ? GO:0000027 ... P46777 37491604
    833400 8ipy:S (3.2) BS01 rna ? GO:0002181 ... P50914 37491604

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).