SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    833401 8ipy:T (3.2) BS01 rna ? GO:0001650 ... P46778 37491604
    833402 8ipy:T (3.2) BS02 rna ? GO:0001650 ... P46778 37491604
    833403 8ipy:U (3.2) BS01 rna ? GO:0002181 ... P61313 37491604
    833404 8ipy:U (3.2) BS02 rna ? GO:0002181 ... P61313 37491604
    833405 8ipy:V (3.2) BS01 rna ? GO:0002181 ... P40429 37491604
    833406 8ipy:W (3.2) BS01 rna ? GO:0005515 ... Q9NVX2 37491604
    833407 8ipy:X (3.2) BS01 rna ? GO:0002181 ... P61513 37491604
    833408 8ipy:Y (3.2) BS01 rna ? GO:0002181 ... P18621 37491604
    833409 8ipy:Y (3.2) BS02 rna ? GO:0002181 ... P18621 37491604
    833410 8ipy:Z (3.2) BS01 rna ? GO:0002181 ... Q07020 37491604
    833411 8ipy:a (3.2) BS01 rna ? GO:0002181 ... P84098 37491604
    833412 8ipy:b (3.2) BS01 rna ? GO:0002181 ... Q02543 37491604
    833413 8ipy:b (3.2) BS02 rna ? GO:0002181 ... Q02543 37491604
    833414 8ipy:c (3.2) BS01 rna ? GO:0001649 ... O76021 37491604
    833415 8ipy:d (3.2) BS01 rna ? GO:0002181 ... P35268 37491604
    833416 8ipy:e (3.2) BS01 rna ? GO:0000122 ... P62829 37491604
    833417 8ipy:f (3.2) BS01 rna ? GO:0000027 ... Q9NZM5 37491604
    833418 8ipy:f (3.2) BS02 rna ? GO:0000027 ... Q9NZM5 37491604
    833419 8ipy:g (3.2) BS01 rna ? GO:0002181 ... P62750 37491604
    833420 8ipy:g (3.2) BS02 rna ? GO:0002181 ... P62750 37491604
    833421 8ipy:h (3.2) BS01 rna ? GO:0002181 ... P61254 37491604
    833422 8ipy:h (3.2) BS02 rna ? GO:0002181 ... P61254 37491604
    833423 8ipy:i (3.2) BS01 rna ? GO:0002181 ... P61353 37491604
    833424 8ipy:j (3.2) BS01 rna ? GO:0002181 ... P62899 37491604
    833425 8ipy:k (3.2) BS01 rna ? GO:0002181 ... P62910 37491604
    833426 8ipy:l (3.2) BS01 rna ? GO:0002181 ... P46779 37491604
    833427 8ipy:m (3.2) BS01 rna ? GO:0002181 ... P62917 37491604
    833428 8ipy:n (3.2) BS01 rna ? GO:0002181 ... P18077 37491604
    833429 8ipy:o (3.2) BS01 rna ? GO:0002181 ... Q02878 37491604
    833430 8ipy:p (3.2) BS01 rna ? GO:0000463 ... P18124 37491604
    833431 8ipy:p (3.2) BS02 rna ? GO:0000463 ... P18124 37491604
    833432 8ipy:q (3.2) BS01 rna ? GO:0000463 ... O00541 37491604
    833433 8ipy:q (3.2) BS02 rna ? GO:0000463 ... O00541 37491604
    833434 8ipy:r (3.2) BS01 rna ? GO:0003723 ... Q9H6F5 37491604
    833435 8ipy:r (3.2) BS02 rna ? GO:0003723 ... Q9H6F5 37491604
    833436 8ipy:t (3.2) BS01 rna ? GO:0000794 ... Q9BYG3 37491604
    833437 8ipy:u (3.2) BS01 rna ? GO:0003723 ... Q9BVP2 37491604
    833438 8ipy:v (3.2) BS01 rna ? GO:0000027 ... Q9UKD2 37491604
    833439 8ipy:w (3.2) BS01 rna ? GO:0003723 ... Q13823 37491604
    833440 8ipy:w (3.2) BS02 GTP ? GO:0003723 ... Q13823 37491604
    833441 8ipy:y (3.2) BS01 rna ? GO:0002181 ... P30050 37491604
    833442 8ipy:z (3.2) BS01 rna ? GO:0003723 ... Q9BRT6 37491604
    833443 8iq0:A (1.88) BS01 CU 1.15.1.1 GO:0000209 ... P00442 37421623
    833444 8iq0:A (1.88) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 37421623
    833445 8iq0:B (1.88) BS01 CU 1.15.1.1 GO:0000209 ... P00442 37421623
    833446 8iq0:B (1.88) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 37421623
    833447 8iq0:C (1.88) BS01 CU 1.15.1.1 GO:0000209 ... P00442 37421623
    833448 8iq0:C (1.88) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 37421623
    833449 8iq0:D (1.88) BS01 CU 1.15.1.1 GO:0000209 ... P00442 37421623
    833450 8iq0:D (1.88) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 37421623
    833451 8iq0:E (1.88) BS01 CU 1.15.1.1 GO:0000209 ... P00442 37421623
    833452 8iq0:E (1.88) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 37421623
    833453 8iq0:F (1.88) BS01 CU 1.15.1.1 GO:0000209 ... P00442 37421623
    833454 8iq0:F (1.88) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 37421623
    833455 8iq0:G (1.88) BS01 CU 1.15.1.1 GO:0000209 ... P00442 37421623
    833456 8iq0:G (1.88) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 37421623
    833457 8iq0:H (1.88) BS01 CU 1.15.1.1 GO:0000209 ... P00442 37421623
    833458 8iq0:H (1.88) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 37421623
    833459 8iq0:I (1.88) BS01 CU 1.15.1.1 GO:0000209 ... P00442 37421623
    833460 8iq0:I (1.88) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 37421623
    833461 8iq0:J (1.88) BS01 CU 1.15.1.1 GO:0000209 ... P00442 37421623
    833462 8iq0:J (1.88) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 37421623
    833463 8iq0:K (1.88) BS01 CU 1.15.1.1 GO:0000209 ... P00442 37421623
    833464 8iq0:K (1.88) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 37421623
    833465 8iq0:L (1.88) BS01 CU 1.15.1.1 GO:0000209 ... P00442 37421623
    833466 8iq0:L (1.88) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 37421623
    833467 8iq0:M (1.88) BS01 CU 1.15.1.1 GO:0000209 ... P00442 37421623
    833468 8iq0:M (1.88) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 37421623
    833469 8iq0:M (1.88) BS03 H2S 1.15.1.1 GO:0000209 ... P00442 37421623
    833470 8iq0:N (1.88) BS01 CU 1.15.1.1 GO:0000209 ... P00442 37421623
    833471 8iq0:N (1.88) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 37421623
    833472 8iq0:O (1.88) BS01 CU 1.15.1.1 GO:0000209 ... P00442 37421623
    833473 8iq0:O (1.88) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 37421623
    833474 8iq0:P (1.88) BS01 CU 1.15.1.1 GO:0000209 ... P00442 37421623
    833475 8iq0:P (1.88) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 37421623
    833476 8iq1:A (1.8) BS01 CU 1.15.1.1 GO:0000209 ... P00442 37421623
    833477 8iq1:A (1.8) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 37421623
    833478 8iq1:B (1.8) BS01 CU 1.15.1.1 GO:0000209 ... P00442 37421623
    833479 8iq1:B (1.8) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 37421623
    833480 8iq1:B (1.8) BS03 H2S 1.15.1.1 GO:0000209 ... P00442 37421623
    833481 8iq1:C (1.8) BS01 CU 1.15.1.1 GO:0000209 ... P00442 37421623
    833482 8iq1:C (1.8) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 37421623
    833483 8iq1:D (1.8) BS01 CU 1.15.1.1 GO:0000209 ... P00442 37421623
    833484 8iq1:D (1.8) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 37421623
    833485 8iq1:E (1.8) BS01 CU 1.15.1.1 GO:0000209 ... P00442 37421623
    833486 8iq1:E (1.8) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 37421623
    833487 8iq1:E (1.8) BS03 H2S 1.15.1.1 GO:0000209 ... P00442 37421623
    833488 8iq1:F (1.8) BS01 CU 1.15.1.1 GO:0000209 ... P00442 37421623
    833489 8iq1:F (1.8) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 37421623
    833490 8iq1:G (1.8) BS01 CU 1.15.1.1 GO:0000209 ... P00442 37421623
    833491 8iq1:G (1.8) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 37421623
    833492 8iq1:H (1.8) BS01 CU 1.15.1.1 GO:0000209 ... P00442 37421623
    833493 8iq1:H (1.8) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 37421623
    833494 8iq4:R (2.7) BS01 87Q ? GO:0004930 ... P43088 38065938
    833495 8iq6:R (3.4) BS01 7WT ? GO:0004930 ... P43088 38065938
    833496 8iq9:A (1.58) BS01 GCU ? GO:0098996 ... A0A6M3YLW2 38349137
    833497 8iq9:A (1.58) BS02 BGC ? GO:0098996 ... A0A6M3YLW2 38349137
    833498 8iq9:A (1.58) BS03 GLC ? GO:0098996 ... A0A6M3YLW2 38349137
    833499 8iq9:A (1.58) BS04 BGC ? GO:0098996 ... A0A6M3YLW2 38349137
    833500 8iq9:A (1.58) BS05 GLC ? GO:0098996 ... A0A6M3YLW2 38349137
    833501 8iq9:A (1.58) BS06 BGC ? GO:0098996 ... A0A6M3YLW2 38349137
    833502 8iq9:A (1.58) BS07 BMA ? GO:0098996 ... A0A6M3YLW2 38349137
    833503 8iq9:A (1.58) BS08 GCU ? GO:0098996 ... A0A6M3YLW2 38349137
    833504 8iq9:B (1.58) BS01 BGC ? GO:0098996 ... A0A6M3YLW2 38349137
    833505 8iq9:B (1.58) BS02 GCU ? GO:0098996 ... A0A6M3YLW2 38349137
    833506 8iq9:B (1.58) BS03 BGC ? GO:0098996 ... A0A6M3YLW2 38349137
    833507 8iq9:B (1.58) BS04 GLC ? GO:0098996 ... A0A6M3YLW2 38349137
    833508 8iq9:B (1.58) BS05 BGC ? GO:0098996 ... A0A6M3YLW2 38349137
    833509 8iq9:B (1.58) BS06 GLC ? GO:0098996 ... A0A6M3YLW2 38349137
    833510 8iq9:B (1.58) BS07 BMA ? GO:0098996 ... A0A6M3YLW2 38349137
    833511 8iq9:B (1.58) BS08 GCU ? GO:0098996 ... A0A6M3YLW2 38349137
    833512 8iq9:C (1.58) BS01 GLC ? GO:0098996 ... A0A6M3YLW2 38349137
    833513 8iq9:C (1.58) BS02 BGC ? GO:0098996 ... A0A6M3YLW2 38349137
    833514 8iq9:C (1.58) BS03 GLC ? GO:0098996 ... A0A6M3YLW2 38349137
    833515 8iq9:C (1.58) BS04 BMA ? GO:0098996 ... A0A6M3YLW2 38349137
    833516 8iq9:C (1.58) BS05 GCU ? GO:0098996 ... A0A6M3YLW2 38349137
    833517 8iq9:C (1.58) BS06 BGC ? GO:0098996 ... A0A6M3YLW2 38349137
    833518 8iq9:C (1.58) BS07 GLC ? GO:0098996 ... A0A6M3YLW2 38349137
    833519 8iqc:A (2.0) BS01 MN ? N/A A0A0C5B022 37587714
    833520 8iqc:A (2.0) BS02 MN ? N/A A0A0C5B022 37587714
    833521 8iqc:B (2.0) BS01 MN ? N/A A0A0C5B022 37587714
    833522 8iqc:B (2.0) BS02 MN ? N/A A0A0C5B022 37587714
    833523 8iqd:A (2.39) BS01 MN ? N/A A0A0C5B022 37587714
    833524 8iqd:A (2.39) BS02 MN ? N/A A0A0C5B022 37587714
    833525 8iqd:A (2.39) BS03 DCP ? N/A A0A0C5B022 37587714
    833526 8iqd:B (2.39) BS01 MN ? N/A A0A0C5B022 37587714
    833527 8iqd:B (2.39) BS02 MN ? N/A A0A0C5B022 37587714
    833528 8iqd:B (2.39) BS03 DCP ? N/A A0A0C5B022 37587714
    833529 8iqd:C (2.39) BS01 MN ? N/A A0A0C5B022 37587714
    833530 8iqd:C (2.39) BS02 MN ? N/A A0A0C5B022 37587714
    833531 8iqd:C (2.39) BS03 DCP ? N/A A0A0C5B022 37587714
    833532 8iqd:D (2.39) BS01 MN ? N/A A0A0C5B022 37587714
    833533 8iqd:D (2.39) BS02 MN ? N/A A0A0C5B022 37587714
    833534 8iqd:D (2.39) BS03 DCP ? N/A A0A0C5B022 37587714
    833535 8iqi:A (3.32) BS01 dna ? GO:0000166 ... A0A0C5B022 37587714
    833536 8iqi:A (3.32) BS02 ANP ? GO:0000166 ... A0A0C5B022 37587714
    833537 8iqi:B (3.32) BS01 dna ? GO:0000166 ... A0A0C5B022 37587714
    833538 8iqi:B (3.32) BS02 ANP ? GO:0000166 ... A0A0C5B022 37587714
    833539 8iqi:B (3.32) BS03 ANP ? GO:0000166 ... A0A0C5B022 37587714
    833540 8iqi:C (3.32) BS01 dna ? GO:0000166 ... A0A0C5B022 37587714
    833541 8iqi:C (3.32) BS02 ANP ? GO:0000166 ... A0A0C5B022 37587714
    833542 8iqi:C (3.32) BS03 ANP ? GO:0000166 ... A0A0C5B022 37587714
    833543 8iqi:D (3.32) BS01 dna ? GO:0000166 ... A0A0C5B022 37587714
    833544 8iqi:D (3.32) BS02 ANP ? GO:0000166 ... A0A0C5B022 37587714
    833545 8iqi:D (3.32) BS03 ANP ? GO:0000166 ... A0A0C5B022 37587714
    833546 8iqi:E (3.32) BS01 dna ? GO:0000166 ... A0A0C5B022 37587714
    833547 8iqi:E (3.32) BS02 ANP ? GO:0000166 ... A0A0C5B022 37587714
    833548 8iqi:F (3.32) BS01 dna ? GO:0000166 ... A0A0C5B022 37587714
    833549 8iqi:F (3.32) BS02 ANP ? GO:0000166 ... A0A0C5B022 37587714
    833550 8iqk:A (2.879) BS01 peptide ? GO:0042981 ... Q07817 37560128
    833551 8iqk:C (2.879) BS01 peptide ? GO:0042981 ... Q07817 37560128
    833552 8iqk:E (2.879) BS01 peptide ? GO:0042981 ... Q07817 37560128
    833553 8iqk:G (2.879) BS01 peptide ? GO:0042981 ... Q07817 37560128
    833554 8iql:A (2.9577) BS01 peptide ? GO:0042981 ... P10415
    Q07817
    37560128
    833555 8iql:C (2.9577) BS01 peptide ? GO:0042981 ... P10415
    Q07817
    37560128
    833556 8iqm:A (1.967) BS01 peptide ? GO:0042981 ... Q07820 37560128
    833557 8iqn:A (1.639) BS01 SRF ? GO:0003677 ... P11473 N/A
    833558 8iqr:H (2.35) BS01 HZA N/A GO:0004674 ... N/A 39921032
    833559 8iqr:h (2.35) BS01 HZA N/A GO:0004674 ... N/A 39921032
    833560 8iqt:A (1.745) BS01 SV0 ? GO:0003677 ... P11473 N/A
    833561 8iqu:A (2.64) BS01 649 6.2.1.57 GO:0006633 ... P9WQ47 37522751
    833562 8ir1:4 (3.3) BS01 rna ? GO:0001649 ... Q9BZE4 37491604
    833563 8ir1:4 (3.3) BS02 rna ? GO:0001649 ... Q9BZE4 37491604
    833564 8ir1:6 (3.3) BS01 rna ? GO:0000054 ... P56537 37491604
    833565 8ir1:7 (3.3) BS01 rna ? GO:0003735 ... Q9UHA3 37491604
    833566 8ir1:9 (3.3) BS01 rna 2.1.1.- GO:0000463 ... Q8IY81 37491604
    833567 8ir1:A (3.3) BS01 rna ? GO:0000027 ... P62913 37491604
    833568 8ir1:A (3.3) BS02 rna ? GO:0000027 ... P62913 37491604
    833569 8ir1:B (3.3) BS01 rna ? GO:0002181 ... P39023 37491604
    833570 8ir1:C (3.3) BS01 rna ? GO:0000027 ... P46777 37491604
    833571 8ir1:C (3.3) BS02 rna ? GO:0000027 ... P46777 37491604
    833572 8ir1:D (3.3) BS01 rna ? GO:0002181 ... P36578 37491604
    833573 8ir1:D (3.3) BS02 rna ? GO:0002181 ... P36578 37491604
    833574 8ir1:E (3.3) BS01 rna ? GO:0002181 ... P62888 37491604
    833575 8ir1:F (3.3) BS01 rna ? GO:0002181 ... P49207 37491604
    833576 8ir1:G (3.3) BS01 rna ? GO:0000470 ... P62424 37491604
    833577 8ir1:G (3.3) BS02 rna ? GO:0000470 ... P62424 37491604
    833578 8ir1:H (3.3) BS01 rna ? GO:0000463 ... P42766 37491604
    833579 8ir1:H (3.3) BS02 rna ? GO:0000463 ... P42766 37491604
    833580 8ir1:I (3.3) BS01 rna ? GO:0002181 ... P32969 37491604
    833581 8ir1:J (3.3) BS01 rna ? GO:0000460 ... O95478 37491604
    833582 8ir1:K (3.3) BS01 rna ? GO:0002181 ... Q9Y3U8 37491604
    833583 8ir1:L (3.3) BS01 rna ? GO:0002181 ... P46776 37491604
    833584 8ir1:M (3.3) BS01 rna ? GO:0000448 ... P61927 37491604
    833585 8ir1:M (3.3) BS02 rna ? GO:0000448 ... P61927 37491604
    833586 8ir1:O (3.3) BS01 rna ? GO:0002181 ... P63173 37491604
    833587 8ir1:P (3.3) BS01 rna ? GO:0002181 ... P62891 37491604
    833588 8ir1:P (3.3) BS02 rna ? GO:0002181 ... P62891 37491604
    833589 8ir1:Q (3.3) BS01 rna ? GO:0002181 ... P26373 37491604
    833590 8ir1:Q (3.3) BS02 rna ? GO:0002181 ... P26373 37491604
    833591 8ir1:R (3.3) BS01 rna ? GO:0000027 ... Q15050 37491604
    833592 8ir1:S (3.3) BS01 rna ? GO:0002181 ... P50914 37491604
    833593 8ir1:T (3.3) BS01 rna ? GO:0000027 ... Q9H7B2 37491604
    833594 8ir1:T (3.3) BS02 rna ? GO:0000027 ... Q9H7B2 37491604
    833595 8ir1:U (3.3) BS01 rna ? GO:0002181 ... P61313 37491604
    833596 8ir1:U (3.3) BS02 rna ? GO:0002181 ... P61313 37491604
    833597 8ir1:V (3.3) BS01 rna ? GO:0002181 ... P40429 37491604
    833598 8ir1:X (3.3) BS01 rna ? GO:0002181 ... P61513 37491604
    833599 8ir1:Y (3.3) BS01 rna ? GO:0002181 ... P18621 37491604
    833600 8ir1:Y (3.3) BS02 rna ? GO:0002181 ... P18621 37491604

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).