SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    833601 8ir1:Z (3.3) BS01 rna ? GO:0002181 ... Q07020 37491604
    833602 8ir1:a (3.3) BS01 rna ? GO:0002181 ... P84098 37491604
    833603 8ir1:b (3.3) BS01 rna ? GO:0002181 ... Q02543 37491604
    833604 8ir1:c (3.3) BS01 rna ? GO:0001650 ... P46778 37491604
    833605 8ir1:d (3.3) BS01 rna ? GO:0002181 ... P35268 37491604
    833606 8ir1:e (3.3) BS01 rna ? GO:0000122 ... P62829 37491604
    833607 8ir1:g (3.3) BS01 rna ? GO:0002181 ... P62750 37491604
    833608 8ir1:g (3.3) BS02 rna ? GO:0002181 ... P62750 37491604
    833609 8ir1:h (3.3) BS01 rna ? GO:0002181 ... P61254 37491604
    833610 8ir1:h (3.3) BS02 rna ? GO:0002181 ... P61254 37491604
    833611 8ir1:i (3.3) BS01 rna ? GO:0002181 ... P61353 37491604
    833612 8ir1:j (3.3) BS01 rna ? GO:0002181 ... P62899 37491604
    833613 8ir1:k (3.3) BS01 rna ? GO:0002181 ... P62910 37491604
    833614 8ir1:l (3.3) BS01 rna ? GO:0002181 ... P46779 37491604
    833615 8ir1:m (3.3) BS01 rna ? GO:0002181 ... P62917 37491604
    833616 8ir1:n (3.3) BS01 rna ? GO:0002181 ... P18077 37491604
    833617 8ir1:o (3.3) BS01 rna ? GO:0002181 ... Q02878 37491604
    833618 8ir1:p (3.3) BS01 rna ? GO:0000463 ... P18124 37491604
    833619 8ir1:u (3.3) BS01 peptide ? GO:0003723 ... Q9BVP2 37491604
    833620 8ir1:u (3.3) BS02 rna ? GO:0003723 ... Q9BVP2 37491604
    833621 8ir1:v (3.3) BS01 rna ? GO:0000027 ... Q9UKD2 37491604
    833622 8ir1:w (3.3) BS01 rna ? GO:0003723 ... Q13823 37491604
    833623 8ir1:w (3.3) BS02 GTP ? GO:0003723 ... Q13823 37491604
    833624 8ir1:y (3.3) BS01 rna ? GO:0002181 ... P30050 37491604
    833625 8ir1:z (3.3) BS01 rna ? GO:0003723 ... Q9BRT6 37491604
    833626 8ir2:A (1.75) BS01 peptide ? GO:2000781 ... Q9BQI6 37748650
    833627 8ir2:B (1.75) BS01 peptide ? GO:2000781 ... Q9BQI6 37748650
    833628 8ir3:3 (3.5) BS01 rna ? GO:0000463 ... Q6DKI1 37491604
    833629 8ir3:3 (3.5) BS02 rna ? GO:0000463 ... Q6DKI1 37491604
    833630 8ir3:4 (3.5) BS01 rna ? GO:0001649 ... Q9BZE4 37491604
    833631 8ir3:4 (3.5) BS02 rna ? GO:0001649 ... Q9BZE4 37491604
    833632 8ir3:6 (3.5) BS01 rna ? GO:0000054 ... P56537 37491604
    833633 8ir3:7 (3.5) BS01 rna ? GO:0003735 ... Q9UHA3 37491604
    833634 8ir3:9 (3.5) BS01 rna ? GO:0003676 ... O00488 37491604
    833635 8ir3:A (3.5) BS01 rna ? GO:0000027 ... P62913 37491604
    833636 8ir3:A (3.5) BS02 rna ? GO:0000027 ... P62913 37491604
    833637 8ir3:B (3.5) BS01 rna ? GO:0002181 ... P39023 37491604
    833638 8ir3:C (3.5) BS01 rna ? GO:0000027 ... P46777 37491604
    833639 8ir3:C (3.5) BS02 rna ? GO:0000027 ... P46777 37491604
    833640 8ir3:D (3.5) BS01 rna ? GO:0002181 ... P36578 37491604
    833641 8ir3:D (3.5) BS02 rna ? GO:0002181 ... P36578 37491604
    833642 8ir3:E (3.5) BS01 rna ? GO:0002181 ... P62888 37491604
    833643 8ir3:F (3.5) BS01 rna ? GO:0002181 ... P49207 37491604
    833644 8ir3:G (3.5) BS01 rna ? GO:0000470 ... P62424 37491604
    833645 8ir3:G (3.5) BS02 rna ? GO:0000470 ... P62424 37491604
    833646 8ir3:H (3.5) BS01 rna ? GO:0000463 ... P42766 37491604
    833647 8ir3:H (3.5) BS02 rna ? GO:0000463 ... P42766 37491604
    833648 8ir3:I (3.5) BS01 rna ? GO:0002181 ... P32969 37491604
    833649 8ir3:J (3.5) BS01 rna ? GO:0000460 ... O95478 37491604
    833650 8ir3:K (3.5) BS01 rna ? GO:0002181 ... Q9Y3U8 37491604
    833651 8ir3:L (3.5) BS01 rna ? GO:0002181 ... P46776 37491604
    833652 8ir3:M (3.5) BS01 rna ? GO:0000448 ... P61927 37491604
    833653 8ir3:M (3.5) BS02 rna ? GO:0000448 ... P61927 37491604
    833654 8ir3:O (3.5) BS01 rna ? GO:0002181 ... P63173 37491604
    833655 8ir3:P (3.5) BS01 rna ? GO:0002181 ... P62891 37491604
    833656 8ir3:P (3.5) BS02 rna ? GO:0002181 ... P62891 37491604
    833657 8ir3:Q (3.5) BS01 rna ? GO:0002181 ... P26373 37491604
    833658 8ir3:Q (3.5) BS02 rna ? GO:0002181 ... P26373 37491604
    833659 8ir3:R (3.5) BS01 rna ? GO:0000027 ... Q15050 37491604
    833660 8ir3:S (3.5) BS01 rna ? GO:0002181 ... P50914 37491604
    833661 8ir3:T (3.5) BS01 rna ? GO:0000027 ... Q9H7B2 37491604
    833662 8ir3:T (3.5) BS02 rna ? GO:0000027 ... Q9H7B2 37491604
    833663 8ir3:U (3.5) BS01 rna ? GO:0002181 ... P61313 37491604
    833664 8ir3:U (3.5) BS02 rna ? GO:0002181 ... P61313 37491604
    833665 8ir3:V (3.5) BS01 rna ? GO:0002181 ... P40429 37491604
    833666 8ir3:X (3.5) BS01 rna ? GO:0002181 ... P61513 37491604
    833667 8ir3:Y (3.5) BS01 rna ? GO:0002181 ... P18621 37491604
    833668 8ir3:Y (3.5) BS02 rna ? GO:0002181 ... P18621 37491604
    833669 8ir3:Z (3.5) BS01 rna ? GO:0002181 ... Q07020 37491604
    833670 8ir3:a (3.5) BS01 rna ? GO:0002181 ... P84098 37491604
    833671 8ir3:b (3.5) BS01 rna ? GO:0002181 ... Q02543 37491604
    833672 8ir3:c (3.5) BS01 rna ? GO:0001650 ... P46778 37491604
    833673 8ir3:d (3.5) BS01 rna ? GO:0002181 ... P35268 37491604
    833674 8ir3:e (3.5) BS01 rna ? GO:0000122 ... P62829 37491604
    833675 8ir3:f (3.5) BS01 rna ? GO:0000027 ... Q9NZM5 37491604
    833676 8ir3:f (3.5) BS02 rna ? GO:0000027 ... Q9NZM5 37491604
    833677 8ir3:g (3.5) BS01 rna ? GO:0002181 ... P62750 37491604
    833678 8ir3:g (3.5) BS02 rna ? GO:0002181 ... P62750 37491604
    833679 8ir3:h (3.5) BS01 rna ? GO:0002181 ... P61254 37491604
    833680 8ir3:h (3.5) BS02 rna ? GO:0002181 ... P61254 37491604
    833681 8ir3:i (3.5) BS01 rna ? GO:0002181 ... P61353 37491604
    833682 8ir3:j (3.5) BS01 rna ? GO:0002181 ... P62899 37491604
    833683 8ir3:k (3.5) BS01 rna ? GO:0002181 ... P62910 37491604
    833684 8ir3:l (3.5) BS01 rna ? GO:0002181 ... P46779 37491604
    833685 8ir3:m (3.5) BS01 rna ? GO:0002181 ... P62917 37491604
    833686 8ir3:n (3.5) BS01 rna ? GO:0002181 ... P18077 37491604
    833687 8ir3:o (3.5) BS01 rna ? GO:0002181 ... Q02878 37491604
    833688 8ir3:p (3.5) BS01 rna ? GO:0000463 ... P18124 37491604
    833689 8ir3:q (3.5) BS01 rna ? GO:0000463 ... O00541 37491604
    833690 8ir3:q (3.5) BS02 rna ? GO:0000463 ... O00541 37491604
    833691 8ir3:s (3.5) BS01 rna ? GO:0001649 ... O76021 37491604
    833692 8ir3:t (3.5) BS01 rna ? GO:0000794 ... Q9BYG3 37491604
    833693 8ir3:u (3.5) BS01 peptide ? GO:0003723 ... Q9BVP2 37491604
    833694 8ir3:u (3.5) BS02 rna ? GO:0003723 ... Q9BVP2 37491604
    833695 8ir3:v (3.5) BS01 rna ? GO:0000027 ... Q9UKD2 37491604
    833696 8ir3:w (3.5) BS01 rna ? GO:0003723 ... Q13823 37491604
    833697 8ir3:w (3.5) BS02 GTP ? GO:0003723 ... Q13823 37491604
    833698 8ir3:y (3.5) BS01 rna ? GO:0002181 ... P30050 37491604
    833699 8ir3:z (3.5) BS01 rna ? GO:0003723 ... Q9BRT6 37491604
    833700 8ir4:A (1.62) BS01 peptide ? GO:2000781 ... Q9BQI6 37748650
    833701 8ir4:B (1.62) BS01 peptide ? GO:2000781 ... Q9BQI6 37748650
    833702 8ir5:A (2.15) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 38297122
    833703 8ir5:A (2.15) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    833704 8ir5:A (2.15) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    833705 8ir5:A (2.15) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    833706 8ir5:A (2.15) BS05 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    833707 8ir5:A (2.15) BS06 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    833708 8ir5:A (2.15) BS07 OEX 1.10.3.9 GO:0005506 ... P51765 38297122
    833709 8ir5:A (2.15) BS08 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    833710 8ir5:A (2.15) BS09 BCT 1.10.3.9 GO:0005506 ... P51765 38297122
    833711 8ir5:B (2.15) BS01 CLA ? GO:0009521 ... D0VWR1 38297122
    833712 8ir5:B (2.15) BS02 CLA ? GO:0009521 ... D0VWR1 38297122
    833713 8ir5:B (2.15) BS03 CLA ? GO:0009521 ... D0VWR1 38297122
    833714 8ir5:B (2.15) BS04 CLA ? GO:0009521 ... D0VWR1 38297122
    833715 8ir5:B (2.15) BS05 CLA ? GO:0009521 ... D0VWR1 38297122
    833716 8ir5:B (2.15) BS06 CLA ? GO:0009521 ... D0VWR1 38297122
    833717 8ir5:B (2.15) BS07 CLA ? GO:0009521 ... D0VWR1 38297122
    833718 8ir5:B (2.15) BS08 CLA ? GO:0009521 ... D0VWR1 38297122
    833719 8ir5:B (2.15) BS09 CLA ? GO:0009521 ... D0VWR1 38297122
    833720 8ir5:B (2.15) BS10 CLA ? GO:0009521 ... D0VWR1 38297122
    833721 8ir5:B (2.15) BS11 CLA ? GO:0009521 ... D0VWR1 38297122
    833722 8ir5:B (2.15) BS12 CLA ? GO:0009521 ... D0VWR1 38297122
    833723 8ir5:B (2.15) BS13 CLA ? GO:0009521 ... D0VWR1 38297122
    833724 8ir5:B (2.15) BS14 CLA ? GO:0009521 ... D0VWR1 38297122
    833725 8ir5:B (2.15) BS15 CLA ? GO:0009521 ... D0VWR1 38297122
    833726 8ir5:B (2.15) BS16 CLA ? GO:0009521 ... D0VWR1 38297122
    833727 8ir5:C (2.15) BS01 OEX ? GO:0005737 ... D0VWR7 38297122
    833728 8ir5:C (2.15) BS02 CLA ? GO:0005737 ... D0VWR7 38297122
    833729 8ir5:C (2.15) BS03 CLA ? GO:0005737 ... D0VWR7 38297122
    833730 8ir5:C (2.15) BS04 CLA ? GO:0005737 ... D0VWR7 38297122
    833731 8ir5:C (2.15) BS05 CLA ? GO:0005737 ... D0VWR7 38297122
    833732 8ir5:C (2.15) BS06 CLA ? GO:0005737 ... D0VWR7 38297122
    833733 8ir5:C (2.15) BS07 CLA ? GO:0005737 ... D0VWR7 38297122
    833734 8ir5:C (2.15) BS08 CLA ? GO:0005737 ... D0VWR7 38297122
    833735 8ir5:C (2.15) BS09 CLA ? GO:0005737 ... D0VWR7 38297122
    833736 8ir5:C (2.15) BS10 CLA ? GO:0005737 ... D0VWR7 38297122
    833737 8ir5:C (2.15) BS11 CLA ? GO:0005737 ... D0VWR7 38297122
    833738 8ir5:C (2.15) BS12 CLA ? GO:0005737 ... D0VWR7 38297122
    833739 8ir5:C (2.15) BS13 CLA ? GO:0005737 ... D0VWR7 38297122
    833740 8ir5:C (2.15) BS14 CLA ? GO:0005737 ... D0VWR7 38297122
    833741 8ir5:C (2.15) BS15 CA ? GO:0005737 ... D0VWR7 38297122
    833742 8ir5:D (2.15) BS01 FE2 1.10.3.9 GO:0005737 ... D0VWR8 38297122
    833743 8ir5:D (2.15) BS02 CLA 1.10.3.9 GO:0005737 ... D0VWR8 38297122
    833744 8ir5:D (2.15) BS03 CLA 1.10.3.9 GO:0005737 ... D0VWR8 38297122
    833745 8ir5:D (2.15) BS04 PHO 1.10.3.9 GO:0005737 ... D0VWR8 38297122
    833746 8ir5:D (2.15) BS05 PHO 1.10.3.9 GO:0005737 ... D0VWR8 38297122
    833747 8ir5:D (2.15) BS06 CLA 1.10.3.9 GO:0005737 ... D0VWR8 38297122
    833748 8ir5:D (2.15) BS07 BCT 1.10.3.9 GO:0005737 ... D0VWR8 38297122
    833749 8ir5:D (2.15) BS08 CLA 1.10.3.9 GO:0005737 ... D0VWR8 38297122
    833750 8ir5:D (2.15) BS09 CLA 1.10.3.9 GO:0005737 ... D0VWR8 38297122
    833751 8ir5:E (2.15) BS01 HEM ? GO:0005506 ... P12238 38297122
    833752 8ir5:F (2.15) BS01 HEM ? GO:0005506 ... P12239 38297122
    833753 8ir5:H (2.15) BS01 CLA ? GO:0009523 ... P19052 38297122
    833754 8ir5:H (2.15) BS02 CLA ? GO:0009523 ... P19052 38297122
    833755 8ir5:H (2.15) BS03 CLA ? GO:0009523 ... P19052 38297122
    833756 8ir5:I (2.15) BS01 CLA ? GO:0005737 ... P12240 38297122
    833757 8ir5:J (2.15) BS01 MG ? GO:0009523 ... Q7DGD4 38297122
    833758 8ir5:K (2.15) BS01 peptide ? GO:0005737 ... P19054 38297122
    833759 8ir5:K (2.15) BS02 CLA ? GO:0005737 ... P19054 38297122
    833760 8ir5:K (2.15) BS03 CLA ? GO:0005737 ... P19054 38297122
    833761 8ir5:O (2.15) BS01 CA ? GO:0009654 ... D0VWR2 38297122
    833762 8ir5:V (2.15) BS01 HEC ? GO:0005506 ... P0A387 38297122
    833763 8ir5:X (2.15) BS01 CLA ? GO:0009523 ... D0VWR4 38297122
    833764 8ir5:Z (2.15) BS01 peptide ? GO:0009523 ... D0VWR5 38297122
    833765 8ir5:a (2.15) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 38297122
    833766 8ir5:a (2.15) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    833767 8ir5:a (2.15) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    833768 8ir5:a (2.15) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    833769 8ir5:a (2.15) BS05 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    833770 8ir5:a (2.15) BS06 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    833771 8ir5:a (2.15) BS07 OEX 1.10.3.9 GO:0005506 ... P51765 38297122
    833772 8ir5:a (2.15) BS08 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    833773 8ir5:a (2.15) BS09 BCT 1.10.3.9 GO:0005506 ... P51765 38297122
    833774 8ir5:b (2.15) BS01 CLA ? GO:0009521 ... D0VWR1 38297122
    833775 8ir5:b (2.15) BS02 CLA ? GO:0009521 ... D0VWR1 38297122
    833776 8ir5:b (2.15) BS03 CLA ? GO:0009521 ... D0VWR1 38297122
    833777 8ir5:b (2.15) BS04 CLA ? GO:0009521 ... D0VWR1 38297122
    833778 8ir5:b (2.15) BS05 CLA ? GO:0009521 ... D0VWR1 38297122
    833779 8ir5:b (2.15) BS06 CLA ? GO:0009521 ... D0VWR1 38297122
    833780 8ir5:b (2.15) BS07 CLA ? GO:0009521 ... D0VWR1 38297122
    833781 8ir5:b (2.15) BS08 CLA ? GO:0009521 ... D0VWR1 38297122
    833782 8ir5:b (2.15) BS09 CLA ? GO:0009521 ... D0VWR1 38297122
    833783 8ir5:b (2.15) BS10 CLA ? GO:0009521 ... D0VWR1 38297122
    833784 8ir5:b (2.15) BS11 CLA ? GO:0009521 ... D0VWR1 38297122
    833785 8ir5:b (2.15) BS12 CLA ? GO:0009521 ... D0VWR1 38297122
    833786 8ir5:b (2.15) BS13 CLA ? GO:0009521 ... D0VWR1 38297122
    833787 8ir5:b (2.15) BS14 CLA ? GO:0009521 ... D0VWR1 38297122
    833788 8ir5:b (2.15) BS15 CLA ? GO:0009521 ... D0VWR1 38297122
    833789 8ir5:c (2.15) BS01 OEX ? GO:0005737 ... D0VWR7 38297122
    833790 8ir5:c (2.15) BS02 CLA ? GO:0005737 ... D0VWR7 38297122
    833791 8ir5:c (2.15) BS03 CLA ? GO:0005737 ... D0VWR7 38297122
    833792 8ir5:c (2.15) BS04 CLA ? GO:0005737 ... D0VWR7 38297122
    833793 8ir5:c (2.15) BS05 CLA ? GO:0005737 ... D0VWR7 38297122
    833794 8ir5:c (2.15) BS06 CLA ? GO:0005737 ... D0VWR7 38297122
    833795 8ir5:c (2.15) BS07 CLA ? GO:0005737 ... D0VWR7 38297122
    833796 8ir5:c (2.15) BS08 CLA ? GO:0005737 ... D0VWR7 38297122
    833797 8ir5:c (2.15) BS09 CLA ? GO:0005737 ... D0VWR7 38297122
    833798 8ir5:c (2.15) BS10 CLA ? GO:0005737 ... D0VWR7 38297122
    833799 8ir5:c (2.15) BS11 CLA ? GO:0005737 ... D0VWR7 38297122
    833800 8ir5:c (2.15) BS12 CLA ? GO:0005737 ... D0VWR7 38297122

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).