SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    835001 8irf:D (2.25) BS02 CLA 1.10.3.9 GO:0005737 ... D0VWR8 38297122
    835002 8irf:D (2.25) BS03 CLA 1.10.3.9 GO:0005737 ... D0VWR8 38297122
    835003 8irf:D (2.25) BS04 PHO 1.10.3.9 GO:0005737 ... D0VWR8 38297122
    835004 8irf:D (2.25) BS05 PHO 1.10.3.9 GO:0005737 ... D0VWR8 38297122
    835005 8irf:D (2.25) BS06 CLA 1.10.3.9 GO:0005737 ... D0VWR8 38297122
    835006 8irf:D (2.25) BS07 BCT 1.10.3.9 GO:0005737 ... D0VWR8 38297122
    835007 8irf:D (2.25) BS08 CLA 1.10.3.9 GO:0005737 ... D0VWR8 38297122
    835008 8irf:D (2.25) BS09 CLA 1.10.3.9 GO:0005737 ... D0VWR8 38297122
    835009 8irf:E (2.25) BS01 HEM ? GO:0005506 ... P12238 38297122
    835010 8irf:F (2.25) BS01 HEM ? GO:0005506 ... P12239 38297122
    835011 8irf:H (2.25) BS01 CLA ? GO:0009523 ... P19052 38297122
    835012 8irf:H (2.25) BS02 CLA ? GO:0009523 ... P19052 38297122
    835013 8irf:H (2.25) BS03 CLA ? GO:0009523 ... P19052 38297122
    835014 8irf:I (2.25) BS01 CLA ? GO:0005737 ... P12240 38297122
    835015 8irf:J (2.25) BS01 MG ? GO:0009523 ... Q7DGD4 38297122
    835016 8irf:K (2.25) BS01 peptide ? GO:0005737 ... P19054 38297122
    835017 8irf:K (2.25) BS02 CLA ? GO:0005737 ... P19054 38297122
    835018 8irf:K (2.25) BS03 CLA ? GO:0005737 ... P19054 38297122
    835019 8irf:O (2.25) BS01 CA ? GO:0009654 ... D0VWR2 38297122
    835020 8irf:V (2.25) BS01 HEC ? GO:0005506 ... P0A387 38297122
    835021 8irf:Z (2.25) BS01 peptide ? GO:0009523 ... D0VWR5 38297122
    835022 8irf:a (2.25) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 38297122
    835023 8irf:a (2.25) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    835024 8irf:a (2.25) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    835025 8irf:a (2.25) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    835026 8irf:a (2.25) BS05 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    835027 8irf:a (2.25) BS06 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    835028 8irf:a (2.25) BS07 OEX 1.10.3.9 GO:0005506 ... P51765 38297122
    835029 8irf:a (2.25) BS08 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    835030 8irf:a (2.25) BS09 BCT 1.10.3.9 GO:0005506 ... P51765 38297122
    835031 8irf:b (2.25) BS01 CLA ? GO:0009521 ... D0VWR1 38297122
    835032 8irf:b (2.25) BS02 CLA ? GO:0009521 ... D0VWR1 38297122
    835033 8irf:b (2.25) BS03 CLA ? GO:0009521 ... D0VWR1 38297122
    835034 8irf:b (2.25) BS04 CLA ? GO:0009521 ... D0VWR1 38297122
    835035 8irf:b (2.25) BS05 CLA ? GO:0009521 ... D0VWR1 38297122
    835036 8irf:b (2.25) BS06 CLA ? GO:0009521 ... D0VWR1 38297122
    835037 8irf:b (2.25) BS07 CLA ? GO:0009521 ... D0VWR1 38297122
    835038 8irf:b (2.25) BS08 CLA ? GO:0009521 ... D0VWR1 38297122
    835039 8irf:b (2.25) BS09 CLA ? GO:0009521 ... D0VWR1 38297122
    835040 8irf:b (2.25) BS10 CLA ? GO:0009521 ... D0VWR1 38297122
    835041 8irf:b (2.25) BS11 CLA ? GO:0009521 ... D0VWR1 38297122
    835042 8irf:b (2.25) BS12 CLA ? GO:0009521 ... D0VWR1 38297122
    835043 8irf:b (2.25) BS13 CLA ? GO:0009521 ... D0VWR1 38297122
    835044 8irf:b (2.25) BS14 CLA ? GO:0009521 ... D0VWR1 38297122
    835045 8irf:b (2.25) BS15 CLA ? GO:0009521 ... D0VWR1 38297122
    835046 8irf:c (2.25) BS01 OEX ? GO:0005737 ... D0VWR7 38297122
    835047 8irf:c (2.25) BS02 CLA ? GO:0005737 ... D0VWR7 38297122
    835048 8irf:c (2.25) BS03 CLA ? GO:0005737 ... D0VWR7 38297122
    835049 8irf:c (2.25) BS04 CLA ? GO:0005737 ... D0VWR7 38297122
    835050 8irf:c (2.25) BS05 CLA ? GO:0005737 ... D0VWR7 38297122
    835051 8irf:c (2.25) BS06 CLA ? GO:0005737 ... D0VWR7 38297122
    835052 8irf:c (2.25) BS07 CLA ? GO:0005737 ... D0VWR7 38297122
    835053 8irf:c (2.25) BS08 CLA ? GO:0005737 ... D0VWR7 38297122
    835054 8irf:c (2.25) BS09 CLA ? GO:0005737 ... D0VWR7 38297122
    835055 8irf:c (2.25) BS10 CLA ? GO:0005737 ... D0VWR7 38297122
    835056 8irf:c (2.25) BS11 CLA ? GO:0005737 ... D0VWR7 38297122
    835057 8irf:c (2.25) BS12 CLA ? GO:0005737 ... D0VWR7 38297122
    835058 8irf:c (2.25) BS13 CLA ? GO:0005737 ... D0VWR7 38297122
    835059 8irf:c (2.25) BS14 CLA ? GO:0005737 ... D0VWR7 38297122
    835060 8irf:c (2.25) BS15 CA ? GO:0005737 ... D0VWR7 38297122
    835061 8irf:c (2.25) BS16 CA ? GO:0005737 ... D0VWR7 38297122
    835062 8irf:d (2.25) BS01 FE2 1.10.3.9 GO:0005737 ... D0VWR8 38297122
    835063 8irf:d (2.25) BS02 CLA 1.10.3.9 GO:0005737 ... D0VWR8 38297122
    835064 8irf:d (2.25) BS03 CLA 1.10.3.9 GO:0005737 ... D0VWR8 38297122
    835065 8irf:d (2.25) BS04 PHO 1.10.3.9 GO:0005737 ... D0VWR8 38297122
    835066 8irf:d (2.25) BS05 PHO 1.10.3.9 GO:0005737 ... D0VWR8 38297122
    835067 8irf:d (2.25) BS06 CLA 1.10.3.9 GO:0005737 ... D0VWR8 38297122
    835068 8irf:d (2.25) BS07 BCT 1.10.3.9 GO:0005737 ... D0VWR8 38297122
    835069 8irf:d (2.25) BS08 CLA 1.10.3.9 GO:0005737 ... D0VWR8 38297122
    835070 8irf:d (2.25) BS09 CLA 1.10.3.9 GO:0005737 ... D0VWR8 38297122
    835071 8irf:e (2.25) BS01 HEM ? GO:0005506 ... P12238 38297122
    835072 8irf:f (2.25) BS01 HEM ? GO:0005506 ... P12239 38297122
    835073 8irf:h (2.25) BS01 CLA ? GO:0009523 ... P19052 38297122
    835074 8irf:h (2.25) BS02 CLA ? GO:0009523 ... P19052 38297122
    835075 8irf:h (2.25) BS03 CLA ? GO:0009523 ... P19052 38297122
    835076 8irf:h (2.25) BS04 CLA ? GO:0009523 ... P19052 38297122
    835077 8irf:i (2.25) BS01 CLA ? GO:0005737 ... P12240 38297122
    835078 8irf:j (2.25) BS01 MG ? GO:0009523 ... Q7DGD4 38297122
    835079 8irf:k (2.25) BS01 peptide ? GO:0005737 ... P19054 38297122
    835080 8irf:k (2.25) BS02 CLA ? GO:0005737 ... P19054 38297122
    835081 8irf:k (2.25) BS03 CLA ? GO:0005737 ... P19054 38297122
    835082 8irf:o (2.25) BS01 CA ? GO:0009654 ... D0VWR2 38297122
    835083 8irf:v (2.25) BS01 HEC ? GO:0005506 ... P0A387 38297122
    835084 8irf:x (2.25) BS01 CLA ? GO:0009523 ... D0VWR4 38297122
    835085 8irf:z (2.25) BS01 peptide ? GO:0009523 ... D0VWR5 38297122
    835086 8irg:A (2.3) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 38297122
    835087 8irg:A (2.3) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    835088 8irg:A (2.3) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    835089 8irg:A (2.3) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    835090 8irg:A (2.3) BS05 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    835091 8irg:A (2.3) BS06 OEX 1.10.3.9 GO:0005506 ... P51765 38297122
    835092 8irg:A (2.3) BS07 BCT 1.10.3.9 GO:0005506 ... P51765 38297122
    835093 8irg:A (2.3) BS08 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    835094 8irg:A (2.3) BS09 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    835095 8irg:B (2.3) BS01 CLA ? GO:0009521 ... D0VWR1 38297122
    835096 8irg:B (2.3) BS02 CLA ? GO:0009521 ... D0VWR1 38297122
    835097 8irg:B (2.3) BS03 CLA ? GO:0009521 ... D0VWR1 38297122
    835098 8irg:B (2.3) BS04 CLA ? GO:0009521 ... D0VWR1 38297122
    835099 8irg:B (2.3) BS05 CLA ? GO:0009521 ... D0VWR1 38297122
    835100 8irg:B (2.3) BS06 CLA ? GO:0009521 ... D0VWR1 38297122
    835101 8irg:B (2.3) BS07 CLA ? GO:0009521 ... D0VWR1 38297122
    835102 8irg:B (2.3) BS08 CLA ? GO:0009521 ... D0VWR1 38297122
    835103 8irg:B (2.3) BS09 CLA ? GO:0009521 ... D0VWR1 38297122
    835104 8irg:B (2.3) BS10 CLA ? GO:0009521 ... D0VWR1 38297122
    835105 8irg:B (2.3) BS11 CLA ? GO:0009521 ... D0VWR1 38297122
    835106 8irg:B (2.3) BS12 CLA ? GO:0009521 ... D0VWR1 38297122
    835107 8irg:B (2.3) BS13 CLA ? GO:0009521 ... D0VWR1 38297122
    835108 8irg:B (2.3) BS14 CLA ? GO:0009521 ... D0VWR1 38297122
    835109 8irg:B (2.3) BS15 CLA ? GO:0009521 ... D0VWR1 38297122
    835110 8irg:B (2.3) BS16 CLA ? GO:0009521 ... D0VWR1 38297122
    835111 8irg:C (2.3) BS01 OEX ? GO:0005737 ... D0VWR7 38297122
    835112 8irg:C (2.3) BS02 CLA ? GO:0005737 ... D0VWR7 38297122
    835113 8irg:C (2.3) BS03 CLA ? GO:0005737 ... D0VWR7 38297122
    835114 8irg:C (2.3) BS04 CLA ? GO:0005737 ... D0VWR7 38297122
    835115 8irg:C (2.3) BS05 CLA ? GO:0005737 ... D0VWR7 38297122
    835116 8irg:C (2.3) BS06 CLA ? GO:0005737 ... D0VWR7 38297122
    835117 8irg:C (2.3) BS07 CLA ? GO:0005737 ... D0VWR7 38297122
    835118 8irg:C (2.3) BS08 CLA ? GO:0005737 ... D0VWR7 38297122
    835119 8irg:C (2.3) BS09 CLA ? GO:0005737 ... D0VWR7 38297122
    835120 8irg:C (2.3) BS10 CLA ? GO:0005737 ... D0VWR7 38297122
    835121 8irg:C (2.3) BS11 CLA ? GO:0005737 ... D0VWR7 38297122
    835122 8irg:C (2.3) BS12 CLA ? GO:0005737 ... D0VWR7 38297122
    835123 8irg:C (2.3) BS13 CLA ? GO:0005737 ... D0VWR7 38297122
    835124 8irg:C (2.3) BS14 CLA ? GO:0005737 ... D0VWR7 38297122
    835125 8irg:C (2.3) BS15 CA ? GO:0005737 ... D0VWR7 38297122
    835126 8irg:D (2.3) BS01 FE2 1.10.3.9 GO:0005737 ... D0VWR8 38297122
    835127 8irg:D (2.3) BS02 CLA 1.10.3.9 GO:0005737 ... D0VWR8 38297122
    835128 8irg:D (2.3) BS03 CLA 1.10.3.9 GO:0005737 ... D0VWR8 38297122
    835129 8irg:D (2.3) BS04 BCT 1.10.3.9 GO:0005737 ... D0VWR8 38297122
    835130 8irg:D (2.3) BS05 CLA 1.10.3.9 GO:0005737 ... D0VWR8 38297122
    835131 8irg:D (2.3) BS06 PHO 1.10.3.9 GO:0005737 ... D0VWR8 38297122
    835132 8irg:D (2.3) BS07 PHO 1.10.3.9 GO:0005737 ... D0VWR8 38297122
    835133 8irg:D (2.3) BS08 CLA 1.10.3.9 GO:0005737 ... D0VWR8 38297122
    835134 8irg:D (2.3) BS09 CLA 1.10.3.9 GO:0005737 ... D0VWR8 38297122
    835135 8irg:E (2.3) BS01 HEM ? GO:0005506 ... P12238 38297122
    835136 8irg:F (2.3) BS01 HEM ? GO:0005506 ... P12239 38297122
    835137 8irg:H (2.3) BS01 CLA ? GO:0009523 ... P19052 38297122
    835138 8irg:H (2.3) BS02 CLA ? GO:0009523 ... P19052 38297122
    835139 8irg:H (2.3) BS03 CLA ? GO:0009523 ... P19052 38297122
    835140 8irg:I (2.3) BS01 CLA ? GO:0005737 ... P12240 38297122
    835141 8irg:J (2.3) BS01 MG ? GO:0009523 ... Q7DGD4 38297122
    835142 8irg:K (2.3) BS01 peptide ? GO:0005737 ... P19054 38297122
    835143 8irg:K (2.3) BS02 CLA ? GO:0005737 ... P19054 38297122
    835144 8irg:K (2.3) BS03 CLA ? GO:0005737 ... P19054 38297122
    835145 8irg:O (2.3) BS01 CA ? GO:0009654 ... D0VWR2 38297122
    835146 8irg:V (2.3) BS01 HEC ? GO:0005506 ... P0A387 38297122
    835147 8irg:Z (2.3) BS01 peptide ? GO:0009523 ... D0VWR5 38297122
    835148 8irg:a (2.3) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 38297122
    835149 8irg:a (2.3) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    835150 8irg:a (2.3) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    835151 8irg:a (2.3) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    835152 8irg:a (2.3) BS05 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    835153 8irg:a (2.3) BS06 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    835154 8irg:a (2.3) BS07 OEX 1.10.3.9 GO:0005506 ... P51765 38297122
    835155 8irg:a (2.3) BS08 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    835156 8irg:a (2.3) BS09 BCT 1.10.3.9 GO:0005506 ... P51765 38297122
    835157 8irg:b (2.3) BS01 CLA ? GO:0009521 ... D0VWR1 38297122
    835158 8irg:b (2.3) BS02 CLA ? GO:0009521 ... D0VWR1 38297122
    835159 8irg:b (2.3) BS03 CLA ? GO:0009521 ... D0VWR1 38297122
    835160 8irg:b (2.3) BS04 CLA ? GO:0009521 ... D0VWR1 38297122
    835161 8irg:b (2.3) BS05 CLA ? GO:0009521 ... D0VWR1 38297122
    835162 8irg:b (2.3) BS06 CLA ? GO:0009521 ... D0VWR1 38297122
    835163 8irg:b (2.3) BS07 CLA ? GO:0009521 ... D0VWR1 38297122
    835164 8irg:b (2.3) BS08 CLA ? GO:0009521 ... D0VWR1 38297122
    835165 8irg:b (2.3) BS09 CLA ? GO:0009521 ... D0VWR1 38297122
    835166 8irg:b (2.3) BS10 CLA ? GO:0009521 ... D0VWR1 38297122
    835167 8irg:b (2.3) BS11 CLA ? GO:0009521 ... D0VWR1 38297122
    835168 8irg:b (2.3) BS12 CLA ? GO:0009521 ... D0VWR1 38297122
    835169 8irg:b (2.3) BS13 CLA ? GO:0009521 ... D0VWR1 38297122
    835170 8irg:b (2.3) BS14 CLA ? GO:0009521 ... D0VWR1 38297122
    835171 8irg:b (2.3) BS15 CLA ? GO:0009521 ... D0VWR1 38297122
    835172 8irg:c (2.3) BS01 OEX ? GO:0005737 ... D0VWR7 38297122
    835173 8irg:c (2.3) BS02 CLA ? GO:0005737 ... D0VWR7 38297122
    835174 8irg:c (2.3) BS03 CLA ? GO:0005737 ... D0VWR7 38297122
    835175 8irg:c (2.3) BS04 CLA ? GO:0005737 ... D0VWR7 38297122
    835176 8irg:c (2.3) BS05 CLA ? GO:0005737 ... D0VWR7 38297122
    835177 8irg:c (2.3) BS06 CLA ? GO:0005737 ... D0VWR7 38297122
    835178 8irg:c (2.3) BS07 CLA ? GO:0005737 ... D0VWR7 38297122
    835179 8irg:c (2.3) BS08 CLA ? GO:0005737 ... D0VWR7 38297122
    835180 8irg:c (2.3) BS09 CLA ? GO:0005737 ... D0VWR7 38297122
    835181 8irg:c (2.3) BS10 CLA ? GO:0005737 ... D0VWR7 38297122
    835182 8irg:c (2.3) BS11 CLA ? GO:0005737 ... D0VWR7 38297122
    835183 8irg:c (2.3) BS12 CLA ? GO:0005737 ... D0VWR7 38297122
    835184 8irg:c (2.3) BS13 CLA ? GO:0005737 ... D0VWR7 38297122
    835185 8irg:c (2.3) BS14 CLA ? GO:0005737 ... D0VWR7 38297122
    835186 8irg:c (2.3) BS15 CA ? GO:0005737 ... D0VWR7 38297122
    835187 8irg:c (2.3) BS16 CA ? GO:0005737 ... D0VWR7 38297122
    835188 8irg:d (2.3) BS01 FE2 1.10.3.9 GO:0005737 ... D0VWR8 38297122
    835189 8irg:d (2.3) BS02 CLA 1.10.3.9 GO:0005737 ... D0VWR8 38297122
    835190 8irg:d (2.3) BS03 CLA 1.10.3.9 GO:0005737 ... D0VWR8 38297122
    835191 8irg:d (2.3) BS04 PHO 1.10.3.9 GO:0005737 ... D0VWR8 38297122
    835192 8irg:d (2.3) BS05 PHO 1.10.3.9 GO:0005737 ... D0VWR8 38297122
    835193 8irg:d (2.3) BS06 CLA 1.10.3.9 GO:0005737 ... D0VWR8 38297122
    835194 8irg:d (2.3) BS07 BCT 1.10.3.9 GO:0005737 ... D0VWR8 38297122
    835195 8irg:d (2.3) BS08 CLA 1.10.3.9 GO:0005737 ... D0VWR8 38297122
    835196 8irg:d (2.3) BS09 CLA 1.10.3.9 GO:0005737 ... D0VWR8 38297122
    835197 8irg:e (2.3) BS01 HEM ? GO:0005506 ... P12238 38297122
    835198 8irg:f (2.3) BS01 HEM ? GO:0005506 ... P12239 38297122
    835199 8irg:h (2.3) BS01 CLA ? GO:0009523 ... P19052 38297122
    835200 8irg:h (2.3) BS02 CLA ? GO:0009523 ... P19052 38297122

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).