SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    835601 8j7b:B (3.22) BS39 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    835602 8j7b:B (3.22) BS40 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    835603 8j7b:B (3.22) BS41 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    835604 8j7b:B (3.22) BS42 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    835605 8j7b:B (3.22) BS43 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    835606 8j7b:B (3.22) BS44 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    835607 8j7b:C (3.22) BS01 SF4 1.97.1.12 GO:0003729 ... P62090 37936349
    835608 8j7b:C (3.22) BS02 SF4 1.97.1.12 GO:0003729 ... P62090 37936349
    835609 8j7b:F (3.22) BS01 CLA ? GO:0003729 ... Q9SHE8 37936349
    835610 8j7b:F (3.22) BS02 CLA ? GO:0003729 ... Q9SHE8 37936349
    835611 8j7b:F (3.22) BS03 CLA ? GO:0003729 ... Q9SHE8 37936349
    835612 8j7b:F (3.22) BS04 CLA ? GO:0003729 ... Q9SHE8 37936349
    835613 8j7b:F (3.22) BS05 CLA ? GO:0003729 ... Q9SHE8 37936349
    835614 8j7b:G (3.22) BS01 CLA ? GO:0005515 ... Q9S7N7 37936349
    835615 8j7b:G (3.22) BS02 CLA ? GO:0005515 ... Q9S7N7 37936349
    835616 8j7b:G (3.22) BS03 CLA ? GO:0005515 ... Q9S7N7 37936349
    835617 8j7b:H (3.22) BS01 CLA ? GO:0005634 ... Q9SUI6 37936349
    835618 8j7b:H (3.22) BS02 CLA ? GO:0005634 ... Q9SUI6 37936349
    835619 8j7b:I (3.22) BS01 CLA ? GO:0003674 ... P56768 37936349
    835620 8j7b:I (3.22) BS02 CLA ? GO:0003674 ... P56768 37936349
    835621 8j7b:J (3.22) BS01 CLA ? GO:0003674 ... P56769 37936349
    835622 8j7b:J (3.22) BS02 CLA ? GO:0003674 ... P56769 37936349
    835623 8j7b:J (3.22) BS03 CLA ? GO:0003674 ... P56769 37936349
    835624 8j7b:K (3.22) BS01 CLA ? GO:0005634 ... Q9SUI5 37936349
    835625 8j7b:K (3.22) BS02 CLA ? GO:0005634 ... Q9SUI5 37936349
    835626 8j7b:K (3.22) BS03 CLA ? GO:0005634 ... Q9SUI5 37936349
    835627 8j7b:K (3.22) BS04 CLA ? GO:0005634 ... Q9SUI5 37936349
    835628 8j7b:L (3.22) BS01 CLA ? GO:0003729 ... Q9SUI4 37936349
    835629 8j7b:L (3.22) BS02 CLA ? GO:0003729 ... Q9SUI4 37936349
    835630 8j7b:L (3.22) BS03 CLA ? GO:0003729 ... Q9SUI4 37936349
    835631 8j7b:L (3.22) BS04 CLA ? GO:0003729 ... Q9SUI4 37936349
    835632 8j7b:L (3.22) BS05 CLA ? GO:0003729 ... Q9SUI4 37936349
    835633 8j7b:L (3.22) BS06 CLA ? GO:0003729 ... Q9SUI4 37936349
    835634 8j7d:C (2.7) BS01 BTI 6.4.1.4 GO:0004485 ... Q9HCC0 39223421
    835635 8j7d:D (2.7) BS01 BTI 6.4.1.4 GO:0004075 ... Q96RQ3 39223421
    835636 8j7d:E (2.7) BS01 BTI 6.4.1.4 GO:0004485 ... Q9HCC0 39223421
    835637 8j7d:F (2.7) BS01 BTI 6.4.1.4 GO:0004075 ... Q96RQ3 39223421
    835638 8j7d:G (2.7) BS01 BTI 6.4.1.4 GO:0004485 ... Q9HCC0 39223421
    835639 8j7d:I (2.7) BS01 BTI 6.4.1.4 GO:0004075 ... Q96RQ3 39223421
    835640 8j7d:J (2.7) BS01 BTI 6.4.1.4 GO:0004485 ... Q9HCC0 39223421
    835641 8j7d:L (2.7) BS01 BTI 6.4.1.4 GO:0004075 ... Q96RQ3 39223421
    835642 8j7f:A (2.6) BS01 peptide ? GO:0005216 ... R1EKX3
    R1FVI4
    38693179
    835643 8j7f:A (2.6) BS02 CLR ? GO:0005216 ... R1EKX3
    R1FVI4
    38693179
    835644 8j7f:A (2.6) BS03 CLR ? GO:0005216 ... R1EKX3
    R1FVI4
    38693179
    835645 8j7f:A (2.6) BS04 CLR ? GO:0005216 ... R1EKX3
    R1FVI4
    38693179
    835646 8j7f:A (2.6) BS05 CA ? GO:0005216 ... R1EKX3
    R1FVI4
    38693179
    835647 8j7f:B (2.6) BS01 peptide ? GO:0005216 ... R1EKX3
    R1FVI4
    38693179
    835648 8j7f:B (2.6) BS02 CA ? GO:0005216 ... R1EKX3
    R1FVI4
    38693179
    835649 8j7f:B (2.6) BS03 CLR ? GO:0005216 ... R1EKX3
    R1FVI4
    38693179
    835650 8j7f:B (2.6) BS04 CLR ? GO:0005216 ... R1EKX3
    R1FVI4
    38693179
    835651 8j7f:B (2.6) BS05 CLR ? GO:0005216 ... R1EKX3
    R1FVI4
    38693179
    835652 8j7f:C (2.6) BS01 peptide ? GO:0005216 ... R1EKX3
    R1FVI4
    38693179
    835653 8j7f:C (2.6) BS02 CA ? GO:0005216 ... R1EKX3
    R1FVI4
    38693179
    835654 8j7f:C (2.6) BS03 CLR ? GO:0005216 ... R1EKX3
    R1FVI4
    38693179
    835655 8j7f:C (2.6) BS04 CLR ? GO:0005216 ... R1EKX3
    R1FVI4
    38693179
    835656 8j7f:D (2.6) BS01 peptide ? GO:0005216 ... R1EKX3
    R1FVI4
    38693179
    835657 8j7f:D (2.6) BS02 CLR ? GO:0005216 ... R1EKX3
    R1FVI4
    38693179
    835658 8j7f:D (2.6) BS03 CLR ? GO:0005216 ... R1EKX3
    R1FVI4
    38693179
    835659 8j7f:D (2.6) BS04 CLR ? GO:0005216 ... R1EKX3
    R1FVI4
    38693179
    835660 8j7g:A (1.63) BS01 60G 3.1.1.- GO:0016787 ... G9I933 37468532
    835661 8j7g:A (1.63) BS02 60G 3.1.1.- GO:0016787 ... G9I933 37468532
    835662 8j7g:B (1.63) BS01 60G 3.1.1.- GO:0016787 ... G9I933 37468532
    835663 8j7g:B (1.63) BS02 60G 3.1.1.- GO:0016787 ... G9I933 37468532
    835664 8j7h:B (3.3) BS01 peptide N/A GO:0005216 ... P42212
    R1EKX3
    R1FVI4
    38693179
    835665 8j7h:C (3.3) BS01 peptide N/A GO:0005216 ... P42212
    R1EKX3
    R1FVI4
    38693179
    835666 8j7h:D (3.3) BS01 peptide N/A GO:0005216 ... P42212
    R1EKX3
    R1FVI4
    38693179
    835667 8j7i:A (1.54) BS01 1SM 3.1.1.- GO:0016787 ... G9I933 N/A
    835668 8j7i:A (1.54) BS02 1SM 3.1.1.- GO:0016787 ... G9I933 N/A
    835669 8j7i:B (1.54) BS01 1SM 3.1.1.- GO:0016787 ... G9I933 N/A
    835670 8j7j:A (1.54) BS01 R4O 3.1.1.- GO:0016787 ... G9I933 37468532
    835671 8j7j:B (1.54) BS01 R4O 3.1.1.- GO:0016787 ... G9I933 37468532
    835672 8j7k:A (1.36) BS01 R4O 3.1.1.- GO:0016787 ... G9I933 37468532
    835673 8j7k:B (1.36) BS01 R4O 3.1.1.- GO:0016787 ... G9I933 37468532
    835674 8j7k:B (1.36) BS02 R4O 3.1.1.- GO:0016787 ... G9I933 37468532
    835675 8j7l:A (1.59) BS01 RXF 3.1.1.- GO:0016787 ... G9I933 N/A
    835676 8j7l:A (1.59) BS02 RXF 3.1.1.- GO:0016787 ... G9I933 N/A
    835677 8j7l:B (1.59) BS01 RXF 3.1.1.- GO:0016787 ... G9I933 N/A
    835678 8j7l:B (1.59) BS02 RXF 3.1.1.- GO:0016787 ... G9I933 N/A
    835679 8j7m:A (3.1) BS01 CLR ? GO:0005216 ... R1EKX3
    R1FVI4
    38693179
    835680 8j7m:A (3.1) BS02 CLR ? GO:0005216 ... R1EKX3
    R1FVI4
    38693179
    835681 8j7m:B (3.1) BS01 CLR ? GO:0005216 ... R1EKX3
    R1FVI4
    38693179
    835682 8j7m:B (3.1) BS02 CLR ? GO:0005216 ... R1EKX3
    R1FVI4
    38693179
    835683 8j7m:C (3.1) BS01 CLR ? GO:0005216 ... R1EKX3
    R1FVI4
    38693179
    835684 8j7m:C (3.1) BS02 CLR ? GO:0005216 ... R1EKX3
    R1FVI4
    38693179
    835685 8j7m:C (3.1) BS03 CLR ? GO:0005216 ... R1EKX3
    R1FVI4
    38693179
    835686 8j7m:C (3.1) BS04 CLR ? GO:0005216 ... R1EKX3
    R1FVI4
    38693179
    835687 8j7m:D (3.1) BS01 CLR ? GO:0005216 ... R1EKX3
    R1FVI4
    38693179
    835688 8j7m:D (3.1) BS02 CLR ? GO:0005216 ... R1EKX3
    R1FVI4
    38693179
    835689 8j7m:D (3.1) BS03 CLR ? GO:0005216 ... R1EKX3
    R1FVI4
    38693179
    835690 8j7m:D (3.1) BS04 CLR ? GO:0005216 ... R1EKX3
    R1FVI4
    38693179
    835691 8j7o:A (3.83) BS01 BTI 6.4.1.1 GO:0003824 ... P11498 39223421
    835692 8j7o:B (3.83) BS01 BTI 6.4.1.1 GO:0003824 ... P11498 39223421
    835693 8j7o:C (3.83) BS01 BTI 6.4.1.1 GO:0003824 ... P11498 39223421
    835694 8j7o:E (3.83) BS01 BTI 6.4.1.1 GO:0003824 ... P11498 39223421
    835695 8j7r:B (3.7) BS01 rna ? GO:0003723 ... Q04637 37640715
    835696 8j7s:A (2.84) BS01 rna ? GO:0003676 ... A0A316E3U6 37491603
    835697 8j7s:A (2.84) BS02 dna ? GO:0003676 ... A0A316E3U6 37491603
    835698 8j7s:B (2.84) BS01 rna ? GO:0007165 ... A0A316E683 37491603
    835699 8j7s:B (2.84) BS02 dna ? GO:0007165 ... A0A316E683 37491603
    835700 8j7s:E (2.84) BS01 rna ? GO:0003676 ... A0A316E3U6 37491603
    835701 8j7s:E (2.84) BS02 dna ? GO:0003676 ... A0A316E3U6 37491603
    835702 8j7s:F (2.84) BS01 rna ? GO:0007165 ... A0A316E683 37491603
    835703 8j7s:F (2.84) BS02 dna ? GO:0007165 ... A0A316E683 37491603
    835704 8j7s:I (2.84) BS01 rna ? GO:0003676 ... A0A316E3U6 37491603
    835705 8j7s:I (2.84) BS02 dna ? GO:0003676 ... A0A316E3U6 37491603
    835706 8j7s:J (2.84) BS01 rna ? GO:0007165 ... A0A316E683 37491603
    835707 8j7s:J (2.84) BS02 dna ? GO:0007165 ... A0A316E683 37491603
    835708 8j7s:M (2.84) BS01 rna ? GO:0003676 ... A0A316E3U6 37491603
    835709 8j7s:M (2.84) BS02 dna ? GO:0003676 ... A0A316E3U6 37491603
    835710 8j7s:N (2.84) BS01 rna ? GO:0007165 ... A0A316E683 37491603
    835711 8j7s:N (2.84) BS02 dna ? GO:0007165 ... A0A316E683 37491603
    835712 8j7u:A (3.12) BS01 ZN ? GO:0000139 ... Q8NEW0 37553324
    835713 8j7u:B (3.12) BS01 ZN ? GO:0000139 ... Q8NEW0 37553324
    835714 8j7w:A (2.92) BS01 ZN ? GO:0000139 ... Q8NEW0 37553324
    835715 8j7w:B (2.92) BS01 ZN ? GO:0000139 ... Q8NEW0 37553324
    835716 8j7y:A (3.4) BS01 ZN ? GO:0000139 ... Q8NEW0 37553324
    835717 8j7y:B (3.4) BS01 ZN ? GO:0000139 ... Q8NEW0 37553324
    835718 8j7z:A (2.72) BS01 A86 ? GO:0009507 ... O65890 38071196
    835719 8j7z:A (2.72) BS02 A86 ? GO:0009507 ... O65890 38071196
    835720 8j7z:A (2.72) BS03 A86 ? GO:0009507 ... O65890 38071196
    835721 8j7z:A (2.72) BS04 A86 ? GO:0009507 ... O65890 38071196
    835722 8j7z:A (2.72) BS05 A86 ? GO:0009507 ... O65890 38071196
    835723 8j7z:A (2.72) BS06 A86 ? GO:0009507 ... O65890 38071196
    835724 8j7z:A (2.72) BS07 A86 ? GO:0009507 ... O65890 38071196
    835725 8j7z:A (2.72) BS08 CLA ? GO:0009507 ... O65890 38071196
    835726 8j7z:A (2.72) BS09 CLA ? GO:0009507 ... O65890 38071196
    835727 8j7z:A (2.72) BS10 KC2 ? GO:0009507 ... O65890 38071196
    835728 8j7z:A (2.72) BS11 CLA ? GO:0009507 ... O65890 38071196
    835729 8j7z:A (2.72) BS12 KC2 ? GO:0009507 ... O65890 38071196
    835730 8j7z:A (2.72) BS13 CLA ? GO:0009507 ... O65890 38071196
    835731 8j7z:A (2.72) BS14 CLA ? GO:0009507 ... O65890 38071196
    835732 8j7z:A (2.72) BS15 KC1 ? GO:0009507 ... O65890 38071196
    835733 8j7z:A (2.72) BS16 CLA ? GO:0009507 ... O65890 38071196
    835734 8j7z:A (2.72) BS17 CLA ? GO:0009507 ... O65890 38071196
    835735 8j7z:A (2.72) BS18 CLA ? GO:0009507 ... O65890 38071196
    835736 8j7z:A (2.72) BS19 CLA ? GO:0009507 ... O65890 38071196
    835737 8j7z:B (2.72) BS01 CLA ? GO:0009507 ... O65890 38071196
    835738 8j7z:B (2.72) BS02 A86 ? GO:0009507 ... O65890 38071196
    835739 8j7z:B (2.72) BS03 A86 ? GO:0009507 ... O65890 38071196
    835740 8j7z:B (2.72) BS04 A86 ? GO:0009507 ... O65890 38071196
    835741 8j7z:B (2.72) BS05 A86 ? GO:0009507 ... O65890 38071196
    835742 8j7z:B (2.72) BS06 A86 ? GO:0009507 ... O65890 38071196
    835743 8j7z:B (2.72) BS07 A86 ? GO:0009507 ... O65890 38071196
    835744 8j7z:B (2.72) BS08 A86 ? GO:0009507 ... O65890 38071196
    835745 8j7z:B (2.72) BS09 CLA ? GO:0009507 ... O65890 38071196
    835746 8j7z:B (2.72) BS10 CLA ? GO:0009507 ... O65890 38071196
    835747 8j7z:B (2.72) BS11 KC2 ? GO:0009507 ... O65890 38071196
    835748 8j7z:B (2.72) BS12 CLA ? GO:0009507 ... O65890 38071196
    835749 8j7z:B (2.72) BS13 KC2 ? GO:0009507 ... O65890 38071196
    835750 8j7z:B (2.72) BS14 CLA ? GO:0009507 ... O65890 38071196
    835751 8j7z:B (2.72) BS15 CLA ? GO:0009507 ... O65890 38071196
    835752 8j7z:B (2.72) BS16 KC1 ? GO:0009507 ... O65890 38071196
    835753 8j7z:B (2.72) BS17 CLA ? GO:0009507 ... O65890 38071196
    835754 8j7z:B (2.72) BS18 CLA ? GO:0009507 ... O65890 38071196
    835755 8j7z:B (2.72) BS19 CLA ? GO:0009507 ... O65890 38071196
    835756 8j7z:C (2.72) BS01 CLA ? GO:0009507 ... O65890 38071196
    835757 8j7z:C (2.72) BS02 CLA ? GO:0009507 ... O65890 38071196
    835758 8j7z:C (2.72) BS03 A86 ? GO:0009507 ... O65890 38071196
    835759 8j7z:C (2.72) BS04 A86 ? GO:0009507 ... O65890 38071196
    835760 8j7z:C (2.72) BS05 A86 ? GO:0009507 ... O65890 38071196
    835761 8j7z:C (2.72) BS06 A86 ? GO:0009507 ... O65890 38071196
    835762 8j7z:C (2.72) BS07 A86 ? GO:0009507 ... O65890 38071196
    835763 8j7z:C (2.72) BS08 A86 ? GO:0009507 ... O65890 38071196
    835764 8j7z:C (2.72) BS09 A86 ? GO:0009507 ... O65890 38071196
    835765 8j7z:C (2.72) BS10 CLA ? GO:0009507 ... O65890 38071196
    835766 8j7z:C (2.72) BS11 CLA ? GO:0009507 ... O65890 38071196
    835767 8j7z:C (2.72) BS12 KC2 ? GO:0009507 ... O65890 38071196
    835768 8j7z:C (2.72) BS13 CLA ? GO:0009507 ... O65890 38071196
    835769 8j7z:C (2.72) BS14 KC2 ? GO:0009507 ... O65890 38071196
    835770 8j7z:C (2.72) BS15 CLA ? GO:0009507 ... O65890 38071196
    835771 8j7z:C (2.72) BS16 CLA ? GO:0009507 ... O65890 38071196
    835772 8j7z:C (2.72) BS17 KC1 ? GO:0009507 ... O65890 38071196
    835773 8j7z:C (2.72) BS18 CLA ? GO:0009507 ... O65890 38071196
    835774 8j7z:C (2.72) BS19 CLA ? GO:0009507 ... O65890 38071196
    835775 8j80:B (2.68) BS01 ZN ? GO:0000139 ... Q8NEW0 37553324
    835776 8j81:A (1.35) BS01 UAC 2.3.2.27 GO:0005634 ... Q00987 38756815
    835777 8j83:A (2.4) BS01 MGD 1.17.1.9 GO:0003954 ... C5ATT7 37668215
    835778 8j83:A (2.4) BS02 MGD 1.17.1.9 GO:0003954 ... C5ATT7 37668215
    835779 8j83:A (2.4) BS03 FES 1.17.1.9 GO:0003954 ... C5ATT7 37668215
    835780 8j83:A (2.4) BS04 SF4 1.17.1.9 GO:0003954 ... C5ATT7 37668215
    835781 8j83:A (2.4) BS05 SF4 1.17.1.9 GO:0003954 ... C5ATT7 37668215
    835782 8j83:A (2.4) BS06 SF4 1.17.1.9 GO:0003954 ... C5ATT7 37668215
    835783 8j83:B (2.4) BS01 FMN 1.2.1.2 GO:0000166 ... C5ATT6 37668215
    835784 8j83:B (2.4) BS02 SF4 1.2.1.2 GO:0000166 ... C5ATT6 37668215
    835785 8j83:B (2.4) BS03 FES 1.2.1.2 GO:0000166 ... C5ATT6 37668215
    835786 8j85:A (2.7) BS01 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    835787 8j85:A (2.7) BS02 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    835788 8j85:A (2.7) BS03 97U ? GO:0016787 ... A0A0S1B1B6 37331057
    835789 8j85:B (2.7) BS01 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    835790 8j85:B (2.7) BS02 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    835791 8j85:B (2.7) BS03 97U ? GO:0016787 ... A0A0S1B1B6 37331057
    835792 8j85:C (2.7) BS01 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    835793 8j85:C (2.7) BS02 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    835794 8j85:C (2.7) BS03 97U ? GO:0016787 ... A0A0S1B1B6 37331057
    835795 8j85:D (2.7) BS01 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    835796 8j85:D (2.7) BS02 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    835797 8j85:D (2.7) BS03 97U ? GO:0016787 ... A0A0S1B1B6 37331057
    835798 8j85:E (2.7) BS01 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    835799 8j85:E (2.7) BS02 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    835800 8j85:E (2.7) BS03 97U ? GO:0016787 ... A0A0S1B1B6 37331057

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).