SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    835801 8j85:F (2.7) BS01 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    835802 8j85:F (2.7) BS02 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    835803 8j85:F (2.7) BS03 97U ? GO:0016787 ... A0A0S1B1B6 37331057
    835804 8j85:G (2.7) BS01 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    835805 8j85:G (2.7) BS02 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    835806 8j85:G (2.7) BS03 97U ? GO:0016787 ... A0A0S1B1B6 37331057
    835807 8j85:H (2.7) BS01 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    835808 8j85:H (2.7) BS02 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    835809 8j85:H (2.7) BS03 97U ? GO:0016787 ... A0A0S1B1B6 37331057
    835810 8j86:A (3.22) BS01 dna 2.7.7.7 GO:0000166 ... A0A7H0DN44 38735603
    835811 8j86:A (3.22) BS02 dna 2.7.7.7 GO:0000166 ... A0A7H0DN44 38735603
    835812 8j86:A (3.22) BS03 CA 2.7.7.7 GO:0000166 ... A0A7H0DN44 38735603
    835813 8j86:B (3.22) BS01 dna 3.2.2.27 GO:0003677 ... M1LL92 38735603
    835814 8j8e:A (2.5) BS01 U5U ? GO:0003677 ... P02768 N/A
    835815 8j8e:I (2.5) BS01 U5U ? GO:0003677 ... P02768 N/A
    835816 8j8f:A (2.98) BS01 dna 2.7.7.7 GO:0000166 ... Q5IXW8 38735603
    835817 8j8f:A (2.98) BS02 dna 2.7.7.7 GO:0000166 ... Q5IXW8 38735603
    835818 8j8f:A (2.98) BS03 DCP 2.7.7.7 GO:0000166 ... Q5IXW8 38735603
    835819 8j8f:A (2.98) BS04 CA 2.7.7.7 GO:0000166 ... Q5IXW8 38735603
    835820 8j8f:A (2.98) BS05 CA 2.7.7.7 GO:0000166 ... Q5IXW8 38735603
    835821 8j8f:A (2.98) BS06 CA 2.7.7.7 GO:0000166 ... Q5IXW8 38735603
    835822 8j8f:B (2.98) BS01 dna 3.2.2.27 GO:0003677 ... Q5IXS4 38735603
    835823 8j8g:A (2.79) BS01 dna 2.7.7.7 GO:0000166 ... Q5IXW8 38735603
    835824 8j8g:A (2.79) BS02 dna 2.7.7.7 GO:0000166 ... Q5IXW8 38735603
    835825 8j8g:A (2.79) BS03 TXJ 2.7.7.7 GO:0000166 ... Q5IXW8 38735603
    835826 8j8g:A (2.79) BS04 CA 2.7.7.7 GO:0000166 ... Q5IXW8 38735603
    835827 8j8g:A (2.79) BS05 CA 2.7.7.7 GO:0000166 ... Q5IXW8 38735603
    835828 8j8g:B (2.79) BS01 dna 3.2.2.27 GO:0003677 ... Q5IXS4 38735603
    835829 8j8h:A (3.4) BS01 rna ? GO:0003676 ... A0A1I7NFD7 37932527
    835830 8j8h:A (3.4) BS02 dna ? GO:0003676 ... A0A1I7NFD7 37932527
    835831 8j8h:B (3.4) BS01 rna ? GO:0007165 ... A0A1I7NFG5 37932527
    835832 8j8h:B (3.4) BS02 dna ? GO:0007165 ... A0A1I7NFG5 37932527
    835833 8j8j:A (2.76) BS01 PRP 2.4.2.45 GO:0000287 ... P9WFR5 38491273
    835834 8j8j:A (2.76) BS02 PGW 2.4.2.45 GO:0000287 ... P9WFR5 38491273
    835835 8j8j:B (2.76) BS01 PRP 2.4.2.45 GO:0000287 ... P9WFR5 38491273
    835836 8j8j:B (2.76) BS02 PGW 2.4.2.45 GO:0000287 ... P9WFR5 38491273
    835837 8j8j:D (2.76) BS01 PRP 2.4.2.45 GO:0000287 ... P9WFR5 38491273
    835838 8j8j:D (2.76) BS02 PGW 2.4.2.45 GO:0000287 ... P9WFR5 38491273
    835839 8j8k:A (3.36) BS01 DSL 2.4.2.45 GO:0000287 ... P9WFR5 38491273
    835840 8j8k:B (3.36) BS01 DSL 2.4.2.45 GO:0000287 ... P9WFR5 38491273
    835841 8j8k:C (3.36) BS01 DSL 2.4.2.45 GO:0000287 ... P9WFR5 38491273
    835842 8j8l:B (3.56) BS01 DAH N/A GO:0002720 ... Q01650 N/A
    835843 8j8m:B (3.58) BS01 TRP N/A GO:0002720 ... Q01650 N/A
    835844 8j8n:A (9.02) BS01 ZN ? GO:0000976 ... P04637 38944084
    835845 8j8n:B (9.02) BS01 ZN ? GO:0000976 ... P04637 38944084
    835846 8j8n:C (9.02) BS01 ZN ? GO:0000976 ... P04637 38944084
    835847 8j8n:D (9.02) BS01 ZN ? GO:0000976 ... P04637 38944084
    835848 8j8o:A (2.24) BS01 1SY ? N/A Q6PVL0 38103556
    835849 8j8o:B (2.24) BS01 1SY ? N/A Q6PVL0 38103556
    835850 8j8o:C (2.24) BS01 1SY ? N/A Q6PVL0 38103556
    835851 8j8o:D (2.24) BS01 1SY ? N/A Q6PVL0 38103556
    835852 8j8o:E (2.24) BS01 1SY ? N/A Q6PVL0 38103556
    835853 8j8o:F (2.24) BS01 1SY ? N/A Q6PVL0 38103556
    835854 8j8r:A (2.9) BS01 peptide ? GO:0000822 ... P32120 38175886
    835855 8j8r:B (2.9) BS01 peptide ? GO:0000822 ... P32120 38175886
    835856 8j8r:C (2.9) BS01 peptide ? GO:0000822 ... P32120 38175886
    835857 8j8r:E (2.9) BS01 peptide N/A N/A N/A 38175886
    835858 8j8t:A (1.81) BS01 CA ? GO:0016020 ... Q9UGM3 N/A
    835859 8j8t:A (1.81) BS02 CA ? GO:0016020 ... Q9UGM3 N/A
    835860 8j8t:A (1.81) BS03 CA ? GO:0016020 ... Q9UGM3 N/A
    835861 8j8t:B (1.81) BS01 CA ? GO:0016020 ... Q9UGM3 N/A
    835862 8j8t:B (1.81) BS02 CA ? GO:0016020 ... Q9UGM3 N/A
    835863 8j8t:B (1.81) BS03 CA ? GO:0016020 ... Q9UGM3 N/A
    835864 8j8v:A (3.22) BS01 peptide ? GO:0000822 ... P32120 38175886
    835865 8j8v:A (3.22) BS02 peptide ? GO:0000822 ... P32120 38175886
    835866 8j8v:F (3.22) BS01 peptide ? GO:0000822 ... P32120 38175886
    835867 8j8v:F (3.22) BS02 peptide ? GO:0000822 ... P32120 38175886
    835868 8j8w:A (1.601) BS01 CO 1.13.11.27 GO:0003868 ... P93836 N/A
    835869 8j8w:A (1.601) BS02 U5D 1.13.11.27 GO:0003868 ... P93836 N/A
    835870 8j8x:A (1.598) BS01 CO 1.13.11.27 GO:0003868 ... P93836 N/A
    835871 8j8x:A (1.598) BS02 U7O 1.13.11.27 GO:0003868 ... P93836 N/A
    835872 8j8z:A (3.4) BS01 peptide ? GO:0000785 ... P29066 38175886
    835873 8j8z:B (3.4) BS01 peptide ? GO:0000785 ... P29066 38175886
    835874 8j8z:L (3.4) BS01 peptide N/A N/A N/A 38175886
    835875 8j8z:M (3.4) BS01 peptide N/A N/A N/A 38175886
    835876 8j90:A (4.71) BS01 dna N/A GO:0000786 ... P59226 38992002
    835877 8j90:A (4.71) BS02 dna N/A GO:0000786 ... P59226 38992002
    835878 8j90:B (4.71) BS01 dna N/A GO:0000325 ... P59259 38992002
    835879 8j90:B (4.71) BS02 dna N/A GO:0000325 ... P59259 38992002
    835880 8j90:C (4.71) BS01 dna N/A GO:0000786 ... Q9FJE8 38992002
    835881 8j90:C (4.71) BS02 dna N/A GO:0000786 ... Q9FJE8 38992002
    835882 8j90:D (4.71) BS01 dna N/A GO:0000786 ... O23629 38992002
    835883 8j90:D (4.71) BS02 dna N/A GO:0000786 ... O23629 38992002
    835884 8j90:E (4.71) BS01 dna N/A GO:0000786 ... P59226 38992002
    835885 8j90:E (4.71) BS02 dna N/A GO:0000786 ... P59226 38992002
    835886 8j90:F (4.71) BS01 dna N/A GO:0000325 ... P59259 38992002
    835887 8j90:F (4.71) BS02 dna N/A GO:0000325 ... P59259 38992002
    835888 8j90:K (4.71) BS01 dna N/A GO:0000786 ... Q9XFH4 38992002
    835889 8j90:K (4.71) BS02 dna N/A GO:0000786 ... Q9XFH4 38992002
    835890 8j91:A (2.9) BS01 dna N/A GO:0000786 ... P59226 38992002
    835891 8j91:A (2.9) BS02 dna N/A GO:0000786 ... P59226 38992002
    835892 8j91:B (2.9) BS01 dna N/A GO:0000325 ... P59259 38992002
    835893 8j91:B (2.9) BS02 dna N/A GO:0000325 ... P59259 38992002
    835894 8j91:C (2.9) BS01 dna N/A GO:0000786 ... Q9LHQ5 38992002
    835895 8j91:C (2.9) BS02 dna N/A GO:0000786 ... Q9LHQ5 38992002
    835896 8j91:D (2.9) BS01 dna N/A GO:0000786 ... O23629 38992002
    835897 8j91:D (2.9) BS02 dna N/A GO:0000786 ... O23629 38992002
    835898 8j91:E (2.9) BS01 dna N/A GO:0000786 ... P59226 38992002
    835899 8j91:E (2.9) BS02 dna N/A GO:0000786 ... P59226 38992002
    835900 8j91:F (2.9) BS01 dna N/A GO:0000325 ... P59259 38992002
    835901 8j91:F (2.9) BS02 dna N/A GO:0000325 ... P59259 38992002
    835902 8j91:G (2.9) BS01 dna N/A GO:0000786 ... Q9LHQ5 38992002
    835903 8j91:G (2.9) BS02 dna N/A GO:0000786 ... Q9LHQ5 38992002
    835904 8j91:H (2.9) BS01 dna N/A GO:0000786 ... O23629 38992002
    835905 8j91:H (2.9) BS02 dna N/A GO:0000786 ... O23629 38992002
    835906 8j92:A (2.9) BS01 dna N/A GO:0000786 ... P59226 38992002
    835907 8j92:A (2.9) BS02 dna N/A GO:0000786 ... P59226 38992002
    835908 8j92:B (2.9) BS01 dna N/A GO:0000325 ... P59259 38992002
    835909 8j92:B (2.9) BS02 dna N/A GO:0000325 ... P59259 38992002
    835910 8j92:C (2.9) BS01 dna N/A GO:0000786 ... Q9FJE8 38992002
    835911 8j92:C (2.9) BS02 dna N/A GO:0000786 ... Q9FJE8 38992002
    835912 8j92:D (2.9) BS01 dna N/A GO:0000786 ... O23629 38992002
    835913 8j92:D (2.9) BS02 dna N/A GO:0000786 ... O23629 38992002
    835914 8j92:E (2.9) BS01 dna N/A GO:0000786 ... P59226 38992002
    835915 8j92:E (2.9) BS02 dna N/A GO:0000786 ... P59226 38992002
    835916 8j92:F (2.9) BS01 dna N/A GO:0000325 ... P59259 38992002
    835917 8j92:F (2.9) BS02 dna N/A GO:0000325 ... P59259 38992002
    835918 8j92:G (2.9) BS01 dna N/A GO:0000786 ... Q9FJE8 38992002
    835919 8j92:G (2.9) BS02 dna N/A GO:0000786 ... Q9FJE8 38992002
    835920 8j92:H (2.9) BS01 dna N/A GO:0000786 ... O23629 38992002
    835921 8j92:H (2.9) BS02 dna N/A GO:0000786 ... O23629 38992002
    835922 8j97:A (3.2) BS01 peptide ? GO:0007165 ... P17870 38175886
    835923 8j98:A (2.9) BS01 9UY N/A GO:0015979 ... N/A N/A
    835924 8j99:B (2.87) BS01 TW3 6.4.1.4 GO:0004485 ... Q9HCC0 N/A
    835925 8j99:D (2.87) BS01 TW3 6.4.1.4 GO:0004485 ... Q9HCC0 N/A
    835926 8j99:D (2.87) BS02 TW3 6.4.1.4 GO:0004485 ... Q9HCC0 N/A
    835927 8j99:G (2.87) BS01 TW3 6.4.1.4 GO:0004485 ... Q9HCC0 N/A
    835928 8j99:H (2.87) BS01 TW3 6.4.1.4 GO:0004485 ... Q9HCC0 N/A
    835929 8j99:J (2.87) BS01 TW3 6.4.1.4 GO:0004485 ... Q9HCC0 N/A
    835930 8j99:J (2.87) BS02 TW3 6.4.1.4 GO:0004485 ... Q9HCC0 N/A
    835931 8j99:L (2.87) BS01 TW3 6.4.1.4 GO:0004485 ... Q9HCC0 N/A
    835932 8j9c:A (2.1) BS01 ZN ? N/A B0RY21 38646733
    835933 8j9c:B (2.1) BS01 ZN ? N/A B0RY21 38646733
    835934 8j9c:C (2.1) BS01 ZN ? N/A B0RY21 38646733
    835935 8j9c:D (2.1) BS01 ZN ? N/A B0RY21 38646733
    835936 8j9d:A (1.9) BS01 ZN ? N/A B0RY21 38646733
    835937 8j9d:A (1.9) BS02 BES ? N/A B0RY21 38646733
    835938 8j9d:B (1.9) BS01 ZN ? N/A B0RY21 38646733
    835939 8j9d:B (1.9) BS02 BES ? N/A B0RY21 38646733
    835940 8j9d:C (1.9) BS01 ZN ? N/A B0RY21 38646733
    835941 8j9d:C (1.9) BS02 BES ? N/A B0RY21 38646733
    835942 8j9d:D (1.9) BS01 ZN ? N/A B0RY21 38646733
    835943 8j9d:D (1.9) BS02 BES ? N/A B0RY21 38646733
    835944 8j9f:A (2.85) BS01 GOL 3.2.1.21 GO:0004553 ... D6RVX0 37384427
    835945 8j9f:B (2.85) BS01 GOL 3.2.1.21 GO:0004553 ... D6RVX0 37384427
    835946 8j9f:D (2.85) BS01 GOL 3.2.1.21 GO:0004553 ... D6RVX0 37384427
    835947 8j9g:A (3.5) BS01 rna ? GO:0003676 ... A0A1I7NFD7 37932527
    835948 8j9g:A (3.5) BS02 dna ? GO:0003676 ... A0A1I7NFD7 37932527
    835949 8j9g:A (3.5) BS03 MG ? GO:0003676 ... A0A1I7NFD7 37932527
    835950 8j9g:B (3.5) BS01 rna ? GO:0007165 ... A0A1I7NFG5 37932527
    835951 8j9g:B (3.5) BS02 dna ? GO:0007165 ... A0A1I7NFG5 37932527
    835952 8j9h:1A (3.11) BS01 FES N/A GO:0008137 ... N/A 38388527
    835953 8j9h:1A (3.11) BS02 SF4 N/A GO:0008137 ... N/A 38388527
    835954 8j9h:1A (3.11) BS03 SF4 N/A GO:0008137 ... N/A 38388527
    835955 8j9h:A1 (3.11) BS01 peptide N/A N/A N/A 38388527
    835956 8j9h:A6 (3.11) BS01 ZMP N/A N/A N/A 38388527
    835957 8j9h:A9 (3.11) BS01 NDP N/A N/A N/A 38388527
    835958 8j9h:AB (3.11) BS01 ZMP N/A GO:0006633 ... N/A 38388527
    835959 8j9h:AC (3.11) BS01 ZMP N/A GO:0006633 ... N/A 38388527
    835960 8j9h:B5 (3.11) BS01 U10 N/A N/A N/A 38388527
    835961 8j9h:B7 (3.11) BS01 peptide N/A GO:0005739 ... N/A 38388527
    835962 8j9h:B9 (3.11) BS01 ZMP N/A N/A N/A 38388527
    835963 8j9h:E6 (3.11) BS01 peptide N/A N/A N/A 38388527
    835964 8j9h:E7 (3.11) BS01 ZN N/A N/A N/A 38388527
    835965 8j9h:N4 (3.11) BS01 U10 7.1.1.2 GO:0003954 ... A0A0S2YRV6 38388527
    835966 8j9h:S2 (3.11) BS01 SF4 N/A GO:0016651 ... N/A 38388527
    835967 8j9h:S6 (3.11) BS01 ZN N/A N/A N/A 38388527
    835968 8j9h:S7 (3.11) BS01 SF4 N/A GO:0008137 ... N/A 38388527
    835969 8j9h:S8 (3.11) BS01 SF4 N/A GO:0016020 ... N/A 38388527
    835970 8j9h:S8 (3.11) BS02 SF4 N/A GO:0016020 ... N/A 38388527
    835971 8j9h:V1 (3.11) BS01 FMN N/A GO:0010181 ... N/A 38388527
    835972 8j9h:V1 (3.11) BS02 SF4 N/A GO:0010181 ... N/A 38388527
    835973 8j9h:V2 (3.11) BS01 FES N/A GO:0016491 ... N/A 38388527
    835974 8j9i:1A (2.87) BS01 FES N/A GO:0008137 ... N/A 38388527
    835975 8j9i:1A (2.87) BS02 SF4 N/A GO:0008137 ... N/A 38388527
    835976 8j9i:1A (2.87) BS03 SF4 N/A GO:0008137 ... N/A 38388527
    835977 8j9i:A6 (2.87) BS01 ZMP N/A N/A N/A 38388527
    835978 8j9i:A9 (2.87) BS01 NDP N/A N/A N/A 38388527
    835979 8j9i:AB (2.87) BS01 ZMP N/A GO:0006633 ... N/A 38388527
    835980 8j9i:AC (2.87) BS01 ZMP N/A GO:0006633 ... N/A 38388527
    835981 8j9i:B5 (2.87) BS01 U10 N/A N/A N/A 38388527
    835982 8j9i:B7 (2.87) BS01 peptide N/A GO:0005739 ... N/A 38388527
    835983 8j9i:B9 (2.87) BS01 ZMP N/A N/A N/A 38388527
    835984 8j9i:E6 (2.87) BS01 peptide N/A N/A N/A 38388527
    835985 8j9i:E7 (2.87) BS01 ZN N/A N/A N/A 38388527
    835986 8j9i:N4 (2.87) BS01 U10 7.1.1.2 GO:0003954 ... A0A0S2YRV6 38388527
    835987 8j9i:S2 (2.87) BS01 SF4 N/A GO:0016651 ... N/A 38388527
    835988 8j9i:S6 (2.87) BS01 ZN N/A N/A N/A 38388527
    835989 8j9i:S7 (2.87) BS01 SF4 N/A GO:0008137 ... N/A 38388527
    835990 8j9i:S8 (2.87) BS01 SF4 N/A GO:0016020 ... N/A 38388527
    835991 8j9i:S8 (2.87) BS02 SF4 N/A GO:0016020 ... N/A 38388527
    835992 8j9i:V1 (2.87) BS01 FMN N/A GO:0010181 ... N/A 38388527
    835993 8j9i:V1 (2.87) BS02 SF4 N/A GO:0010181 ... N/A 38388527
    835994 8j9i:V1 (2.87) BS03 NAI N/A GO:0010181 ... N/A 38388527
    835995 8j9i:V2 (2.87) BS01 FES N/A GO:0016491 ... N/A 38388527
    835996 8j9j:1A (3.03) BS01 FES N/A GO:0008137 ... N/A 38388527
    835997 8j9j:1A (3.03) BS02 SF4 N/A GO:0008137 ... N/A 38388527
    835998 8j9j:1A (3.03) BS03 SF4 N/A GO:0008137 ... N/A 38388527
    835999 8j9j:A1 (3.03) BS01 peptide N/A N/A N/A 38388527
    836000 8j9j:A6 (3.03) BS01 ZMP N/A N/A N/A 38388527

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).