SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    836801 8jd0:3 (3.3) BS05 CLR 2.7.11.1 GO:0001641 ... A0A8V8TRG9
    Q14832
    37286794
    836802 8jd1:2 (3.7) BS01 GLU 5.2.1.8 GO:0001641 ... P62942
    Q14416
    37286794
    836803 8jd1:2 (3.7) BS02 CLR 5.2.1.8 GO:0001641 ... P62942
    Q14416
    37286794
    836804 8jd1:3 (3.7) BS01 GLU 2.7.11.1 GO:0001641 ... A0A8V8TRG9
    Q14832
    37286794
    836805 8jd1:3 (3.7) BS02 CLR 2.7.11.1 GO:0001641 ... A0A8V8TRG9
    Q14832
    37286794
    836806 8jd1:3 (3.7) BS03 CLR 2.7.11.1 GO:0001641 ... A0A8V8TRG9
    Q14832
    37286794
    836807 8jd1:3 (3.7) BS04 CLR 2.7.11.1 GO:0001641 ... A0A8V8TRG9
    Q14832
    37286794
    836808 8jd2:2 (2.8) BS01 GLU 5.2.1.8 GO:0001641 ... P62942
    Q14416
    37286794
    836809 8jd2:3 (2.8) BS01 GLU 2.7.11.1 GO:0001641 ... A0A8V8TRG9
    Q14832
    37286794
    836810 8jd3:2 (3.3) BS01 HZR ? GO:0001641 ... Q14416 37286794
    836811 8jd3:2 (3.3) BS02 GLU ? GO:0001641 ... Q14416 37286794
    836812 8jd3:2 (3.3) BS03 CLR ? GO:0001641 ... Q14416 37286794
    836813 8jd3:3 (3.3) BS01 GLU ? GO:0001641 ... Q14832 37286794
    836814 8jd4:2 (2.9) BS01 GLU 5.2.1.8 GO:0001641 ... P62942
    Q14416
    37286794
    836815 8jd4:4 (2.9) BS01 GLU 2.7.11.1 GO:0001640 ... A0A8V8TRG9
    Q14833
    37286794
    836816 8jd5:2 (3.6) BS01 HZR ? GO:0001641 ... Q14416 37286794
    836817 8jd5:2 (3.6) BS02 GLU ? GO:0001641 ... Q14416 37286794
    836818 8jd5:2 (3.6) BS03 CLR ? GO:0001641 ... Q14416 37286794
    836819 8jd5:2 (3.6) BS04 BQI ? GO:0001641 ... Q14416 37286794
    836820 8jd5:4 (3.6) BS01 CLR ? GO:0001640 ... Q14833 37286794
    836821 8jd5:4 (3.6) BS02 GLU ? GO:0001640 ... Q14833 37286794
    836822 8jd5:4 (3.6) BS03 BQI ? GO:0001640 ... Q14833 37286794
    836823 8jd5:4 (3.6) BS04 CLR ? GO:0001640 ... Q14833 37286794
    836824 8jd6:B (3.4) BS01 peptide ? GO:0001750 ... P62873 37286794
    836825 8jd6:R (3.4) BS01 BK0 ? GO:0001640 ... Q14833 37286794
    836826 8jd6:R (3.4) BS02 SEP ? GO:0001640 ... Q14833 37286794
    836827 8jd6:S (3.4) BS01 BK0 ? GO:0001640 ... Q14833 37286794
    836828 8jd6:S (3.4) BS02 SEP ? GO:0001640 ... Q14833 37286794
    836829 8jd8:A (1.86) BS01 ZN 1.15.1.1 GO:0004784 ... Q71S31 38108885
    836830 8jd8:A (1.86) BS02 CU 1.15.1.1 GO:0004784 ... Q71S31 38108885
    836831 8jd8:A (1.86) BS03 ZN 1.15.1.1 GO:0004784 ... Q71S31 38108885
    836832 8jd8:B (1.86) BS01 ZN 1.15.1.1 GO:0004784 ... Q71S31 38108885
    836833 8jd8:B (1.86) BS02 CU 1.15.1.1 GO:0004784 ... Q71S31 38108885
    836834 8jd8:C (1.86) BS01 ZN 1.15.1.1 GO:0004784 ... Q71S31 38108885
    836835 8jd8:C (1.86) BS02 ZN 1.15.1.1 GO:0004784 ... Q71S31 38108885
    836836 8jd8:C (1.86) BS03 CU 1.15.1.1 GO:0004784 ... Q71S31 38108885
    836837 8jd8:D (1.86) BS01 ZN 1.15.1.1 GO:0004784 ... Q71S31 38108885
    836838 8jd8:D (1.86) BS02 CU 1.15.1.1 GO:0004784 ... Q71S31 38108885
    836839 8jdb:A (1.75) BS01 FAD 1.1.2.4 GO:0003824 ... Q7TNG8 37863926
    836840 8jdb:A (1.75) BS02 UIT 1.1.2.4 GO:0003824 ... Q7TNG8 37863926
    836841 8jdc:A (1.696) BS01 FAD 1.1.2.4 GO:0003824 ... Q7TNG8 37863926
    836842 8jdd:A (1.55) BS01 FAD 1.1.2.4 GO:0003824 ... Q7TNG8 37863926
    836843 8jde:A (1.729) BS01 FAD 1.1.2.4 GO:0003824 ... Q7TNG8 37863926
    836844 8jde:A (1.729) BS02 MN 1.1.2.4 GO:0003824 ... Q7TNG8 37863926
    836845 8jde:A (1.729) BS03 LAC 1.1.2.4 GO:0003824 ... Q7TNG8 37863926
    836846 8jdf:A (1.69) BS01 FAD 1.1.2.4 GO:0003824 ... Q7TNG8 37863926
    836847 8jdf:A (1.69) BS02 LAC 1.1.2.4 GO:0003824 ... Q7TNG8 37863926
    836848 8jdg:A (1.31) BS01 FAD 1.1.2.4 GO:0003824 ... Q7TNG8 37863926
    836849 8jdg:A (1.31) BS02 UCU 1.1.2.4 GO:0003824 ... Q7TNG8 37863926
    836850 8jdj:0 (2.5) BS01 rna 4.2.99.18 GO:0000977 ... P23396 37992713
    836851 8jdj:1 (2.5) BS01 rna ? GO:0002181 ... P62701 37992713
    836852 8jdj:2 (2.5) BS01 rna ? GO:0000028 ... P46782 37992713
    836853 8jdj:2 (2.5) BS02 MG ? GO:0000028 ... P46782 37992713
    836854 8jdj:3 (2.5) BS01 rna ? GO:0000082 ... P62753 37992713
    836855 8jdj:4 (2.5) BS01 rna ? GO:0001843 ... P62081 37992713
    836856 8jdj:5 (2.5) BS01 rna ? GO:0000462 ... P62241 37992713
    836857 8jdj:5 (2.5) BS02 rna ? GO:0000462 ... P62241 37992713
    836858 8jdj:6 (2.5) BS01 rna ? GO:0002181 ... P46781 37992713
    836859 8jdj:7 (2.5) BS01 rna ? GO:0002181 ... P46783 37992713
    836860 8jdj:8 (2.5) BS01 rna ? GO:0002181 ... P62280 37992713
    836861 8jdj:9 (2.5) BS01 rna ? GO:0002181 ... P62277 37992713
    836862 8jdj:AA (2.5) BS01 rna ? GO:0000028 ... P62263 37992713
    836863 8jdj:AB (2.5) BS01 rna ? GO:0000028 ... P62841 37992713
    836864 8jdj:AB (2.5) BS02 rna ? GO:0000028 ... P62841 37992713
    836865 8jdj:AB (2.5) BS03 rna ? GO:0000028 ... P62841 37992713
    836866 8jdj:AC (2.5) BS01 rna ? GO:0000462 ... P62249 37992713
    836867 8jdj:AD (2.5) BS01 rna ? GO:0002181 ... P08708 37992713
    836868 8jdj:AE (2.5) BS01 rna ? GO:0002181 ... P62269 37992713
    836869 8jdj:AE (2.5) BS02 rna ? GO:0002181 ... P62269 37992713
    836870 8jdj:AF (2.5) BS01 rna ? GO:0000028 ... P39019 37992713
    836871 8jdj:AG (2.5) BS01 rna ? GO:0002181 ... P60866 37992713
    836872 8jdj:AI (2.5) BS01 rna ? GO:0002181 ... P62244 37992713
    836873 8jdj:AJ (2.5) BS01 rna ? GO:0002181 ... P62266 37992713
    836874 8jdj:AK (2.5) BS01 rna ? GO:0002181 ... P62847 37992713
    836875 8jdj:AL (2.5) BS01 rna ? GO:0002181 ... P62851 37992713
    836876 8jdj:AM (2.5) BS01 rna ? GO:0002181 ... P62854 37992713
    836877 8jdj:AM (2.5) BS02 ZN ? GO:0002181 ... P62854 37992713
    836878 8jdj:AN (2.5) BS01 rna ? GO:0000028 ... P42677 37992713
    836879 8jdj:AO (2.5) BS01 rna ? GO:0000028 ... P62857 37992713
    836880 8jdj:AP (2.5) BS01 rna ? GO:0002181 ... P62273 37992713
    836881 8jdj:AP (2.5) BS02 ZN ? GO:0002181 ... P62273 37992713
    836882 8jdj:AQ (2.5) BS01 rna ? GO:0003735 ... P62861 37992713
    836883 8jdj:AR (2.5) BS01 rna ? GO:0001891 ... P63244 37992713
    836884 8jdj:G (2.5) BS01 rna ? GO:0002181 ... P62917 37992713
    836885 8jdj:G (2.5) BS02 MG ? GO:0002181 ... P62917 37992713
    836886 8jdj:H (2.5) BS01 rna ? GO:0002181 ... P39023 37992713
    836887 8jdj:H (2.5) BS02 MG ? GO:0002181 ... P39023 37992713
    836888 8jdj:I (2.5) BS01 rna ? GO:0002181 ... P36578 37992713
    836889 8jdj:I (2.5) BS02 rna ? GO:0002181 ... P36578 37992713
    836890 8jdj:J (2.5) BS01 rna ? GO:0000027 ... P46777 37992713
    836891 8jdj:J (2.5) BS02 rna ? GO:0000027 ... P46777 37992713
    836892 8jdj:K (2.5) BS01 rna ? GO:0002181 ... Q02878 37992713
    836893 8jdj:L (2.5) BS01 rna ? GO:0000463 ... P18124 37992713
    836894 8jdj:L (2.5) BS02 rna ? GO:0000463 ... P18124 37992713
    836895 8jdj:M (2.5) BS01 rna ? GO:0000470 ... P62424 37992713
    836896 8jdj:M (2.5) BS02 rna ? GO:0000470 ... P62424 37992713
    836897 8jdj:N (2.5) BS01 rna ? GO:0002181 ... P32969 37992713
    836898 8jdj:N (2.5) BS02 MG ? GO:0002181 ... P32969 37992713
    836899 8jdj:O (2.5) BS01 rna ? GO:0000027 ... Q96L21 37992713
    836900 8jdj:O (2.5) BS02 rna ? GO:0000027 ... Q96L21 37992713
    836901 8jdj:P (2.5) BS01 rna ? GO:0000027 ... P62913 37992713
    836902 8jdj:P (2.5) BS02 rna ? GO:0000027 ... P62913 37992713
    836903 8jdj:P (2.5) BS03 rna ? GO:0000027 ... P62913 37992713
    836904 8jdj:Q (2.5) BS01 rna ? GO:0001824 ... P26373 37992713
    836905 8jdj:Q (2.5) BS02 rna ? GO:0001824 ... P26373 37992713
    836906 8jdj:R (2.5) BS01 rna ? GO:0002181 ... P50914 37992713
    836907 8jdj:S (2.5) BS01 rna ? GO:0002181 ... P61313 37992713
    836908 8jdj:S (2.5) BS02 rna ? GO:0002181 ... P61313 37992713
    836909 8jdj:T (2.5) BS01 rna ? GO:0002181 ... P40429 37992713
    836910 8jdj:U (2.5) BS01 rna ? GO:0002181 ... P18621 37992713
    836911 8jdj:U (2.5) BS02 rna ? GO:0002181 ... P18621 37992713
    836912 8jdj:V (2.5) BS01 rna ? GO:0002181 ... Q07020 37992713
    836913 8jdj:V (2.5) BS02 MG ? GO:0002181 ... Q07020 37992713
    836914 8jdj:V (2.5) BS03 MG ? GO:0002181 ... Q07020 37992713
    836915 8jdj:W (2.5) BS01 rna ? GO:0002181 ... P84098 37992713
    836916 8jdj:W (2.5) BS02 rna ? GO:0002181 ... P84098 37992713
    836917 8jdj:X (2.5) BS01 rna ? GO:0002181 ... Q02543 37992713
    836918 8jdj:X (2.5) BS02 rna ? GO:0002181 ... Q02543 37992713
    836919 8jdj:Y (2.5) BS01 rna ? GO:0002181 ... P46778 37992713
    836920 8jdj:Y (2.5) BS02 rna ? GO:0002181 ... P46778 37992713
    836921 8jdj:Z (2.5) BS01 rna ? GO:0002181 ... P35268 37992713
    836922 8jdj:a (2.5) BS01 rna ? GO:0000122 ... P62829 37992713
    836923 8jdj:b (2.5) BS01 rna ? GO:0000027 ... P83731 37992713
    836924 8jdj:c (2.5) BS01 rna ? GO:0002181 ... P62750 37992713
    836925 8jdj:c (2.5) BS02 rna ? GO:0002181 ... P62750 37992713
    836926 8jdj:d (2.5) BS01 rna ? GO:0002181 ... P61254 37992713
    836927 8jdj:d (2.5) BS02 rna ? GO:0002181 ... P61254 37992713
    836928 8jdj:e (2.5) BS01 rna ? GO:0002181 ... P61353 37992713
    836929 8jdj:f (2.5) BS01 rna ? GO:0002181 ... P46776 37992713
    836930 8jdj:g (2.5) BS01 rna ? GO:0002181 ... P47914 37992713
    836931 8jdj:g (2.5) BS02 MG ? GO:0002181 ... P47914 37992713
    836932 8jdj:h (2.5) BS01 rna ? GO:0002181 ... P62888 37992713
    836933 8jdj:i (2.5) BS01 rna ? GO:0002181 ... P62899 37992713
    836934 8jdj:j (2.5) BS01 rna ? GO:0002181 ... P62910 37992713
    836935 8jdj:j (2.5) BS02 MG ? GO:0002181 ... P62910 37992713
    836936 8jdj:k (2.5) BS01 rna ? GO:0000049 ... P18077 37992713
    836937 8jdj:k (2.5) BS02 MG ? GO:0000049 ... P18077 37992713
    836938 8jdj:l (2.5) BS01 rna ? GO:0002181 ... P49207 37992713
    836939 8jdj:l (2.5) BS02 MG ? GO:0002181 ... P49207 37992713
    836940 8jdj:m (2.5) BS01 rna ? GO:0000463 ... P42766 37992713
    836941 8jdj:m (2.5) BS02 rna ? GO:0000463 ... P42766 37992713
    836942 8jdj:n (2.5) BS01 rna ? GO:0002181 ... Q9Y3U8 37992713
    836943 8jdj:o (2.5) BS01 rna ? GO:0002181 ... P61927 37992713
    836944 8jdj:o (2.5) BS02 rna ? GO:0002181 ... P61927 37992713
    836945 8jdj:o (2.5) BS03 ZN ? GO:0002181 ... P61927 37992713
    836946 8jdj:p (2.5) BS01 rna ? GO:0001501 ... P63173 37992713
    836947 8jdj:q (2.5) BS01 rna ? GO:0002181 ... P62891 37992713
    836948 8jdj:q (2.5) BS02 rna ? GO:0002181 ... P62891 37992713
    836949 8jdj:r (2.5) BS01 rna ? GO:0002181 ... P62987 37992713
    836950 8jdj:r (2.5) BS02 ZN ? GO:0002181 ... P62987 37992713
    836951 8jdj:t (2.5) BS01 rna ? GO:0002181 ... P83881 37992713
    836952 8jdj:t (2.5) BS02 ZN ? GO:0002181 ... P83881 37992713
    836953 8jdj:u (2.5) BS01 rna ? GO:0002181 ... P61513 37992713
    836954 8jdj:u (2.5) BS02 MG ? GO:0002181 ... P61513 37992713
    836955 8jdj:u (2.5) BS03 ZN ? GO:0002181 ... P61513 37992713
    836956 8jdj:v (2.5) BS01 rna ? GO:0002181 ... P46779 37992713
    836957 8jdj:x (2.5) BS01 rna ? GO:0000028 ... P08865 37992713
    836958 8jdj:y (2.5) BS01 rna ? GO:0002181 ... P61247 37992713
    836959 8jdj:z (2.5) BS01 rna ? GO:0002181 ... P15880 37992713
    836960 8jdk:0 (2.26) BS01 rna 4.2.99.18 GO:0000977 ... P23396 37992713
    836961 8jdk:1 (2.26) BS01 rna ? GO:0002181 ... P62701 37992713
    836962 8jdk:2 (2.26) BS01 rna ? GO:0000028 ... P46782 37992713
    836963 8jdk:2 (2.26) BS02 MG ? GO:0000028 ... P46782 37992713
    836964 8jdk:3 (2.26) BS01 rna ? GO:0000082 ... P62753 37992713
    836965 8jdk:4 (2.26) BS01 rna ? GO:0001843 ... P62081 37992713
    836966 8jdk:5 (2.26) BS01 rna ? GO:0000462 ... P62241 37992713
    836967 8jdk:5 (2.26) BS02 rna ? GO:0000462 ... P62241 37992713
    836968 8jdk:6 (2.26) BS01 rna ? GO:0002181 ... P46781 37992713
    836969 8jdk:7 (2.26) BS01 rna ? GO:0002181 ... P46783 37992713
    836970 8jdk:8 (2.26) BS01 rna ? GO:0002181 ... P62280 37992713
    836971 8jdk:9 (2.26) BS01 rna ? GO:0002181 ... P62277 37992713
    836972 8jdk:AA (2.26) BS01 rna ? GO:0000028 ... P62263 37992713
    836973 8jdk:AB (2.26) BS01 rna ? GO:0000028 ... P62841 37992713
    836974 8jdk:AB (2.26) BS02 rna ? GO:0000028 ... P62841 37992713
    836975 8jdk:AC (2.26) BS01 rna ? GO:0000462 ... P62249 37992713
    836976 8jdk:AD (2.26) BS01 rna ? GO:0002181 ... P08708 37992713
    836977 8jdk:AE (2.26) BS01 rna ? GO:0002181 ... P62269 37992713
    836978 8jdk:AF (2.26) BS01 rna ? GO:0000028 ... P39019 37992713
    836979 8jdk:AG (2.26) BS01 rna ? GO:0002181 ... P60866 37992713
    836980 8jdk:AI (2.26) BS01 rna ? GO:0002181 ... P62244 37992713
    836981 8jdk:AJ (2.26) BS01 rna ? GO:0002181 ... P62266 37992713
    836982 8jdk:AK (2.26) BS01 rna ? GO:0002181 ... P62847 37992713
    836983 8jdk:AL (2.26) BS01 rna ? GO:0002181 ... P62851 37992713
    836984 8jdk:AM (2.26) BS01 rna ? GO:0002181 ... P62854 37992713
    836985 8jdk:AM (2.26) BS02 ZN ? GO:0002181 ... P62854 37992713
    836986 8jdk:AN (2.26) BS01 rna ? GO:0000028 ... P42677 37992713
    836987 8jdk:AO (2.26) BS01 rna ? GO:0000028 ... P62857 37992713
    836988 8jdk:AP (2.26) BS01 rna ? GO:0002181 ... P62273 37992713
    836989 8jdk:AP (2.26) BS02 ZN ? GO:0002181 ... P62273 37992713
    836990 8jdk:AQ (2.26) BS01 rna ? GO:0003735 ... P62861 37992713
    836991 8jdk:AR (2.26) BS01 rna ? GO:0001891 ... P63244 37992713
    836992 8jdk:G (2.26) BS01 rna ? GO:0002181 ... P62917 37992713
    836993 8jdk:G (2.26) BS02 MG ? GO:0002181 ... P62917 37992713
    836994 8jdk:H (2.26) BS01 rna ? GO:0002181 ... P39023 37992713
    836995 8jdk:H (2.26) BS02 MG ? GO:0002181 ... P39023 37992713
    836996 8jdk:I (2.26) BS01 rna ? GO:0002181 ... P36578 37992713
    836997 8jdk:I (2.26) BS02 rna ? GO:0002181 ... P36578 37992713
    836998 8jdk:J (2.26) BS01 rna ? GO:0000027 ... P46777 37992713
    836999 8jdk:J (2.26) BS02 rna ? GO:0000027 ... P46777 37992713
    837000 8jdk:K (2.26) BS01 rna ? GO:0002181 ... Q02878 37992713

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).