SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    837001 8jdk:L (2.26) BS01 rna ? GO:0000463 ... P18124 37992713
    837002 8jdk:L (2.26) BS02 rna ? GO:0000463 ... P18124 37992713
    837003 8jdk:M (2.26) BS01 rna ? GO:0000470 ... P62424 37992713
    837004 8jdk:M (2.26) BS02 rna ? GO:0000470 ... P62424 37992713
    837005 8jdk:N (2.26) BS01 rna ? GO:0002181 ... P32969 37992713
    837006 8jdk:N (2.26) BS02 MG ? GO:0002181 ... P32969 37992713
    837007 8jdk:O (2.26) BS01 rna ? GO:0000027 ... Q96L21 37992713
    837008 8jdk:O (2.26) BS02 rna ? GO:0000027 ... Q96L21 37992713
    837009 8jdk:P (2.26) BS01 rna ? GO:0000027 ... P62913 37992713
    837010 8jdk:P (2.26) BS02 rna ? GO:0000027 ... P62913 37992713
    837011 8jdk:P (2.26) BS03 rna ? GO:0000027 ... P62913 37992713
    837012 8jdk:Q (2.26) BS01 rna ? GO:0001824 ... P26373 37992713
    837013 8jdk:Q (2.26) BS02 rna ? GO:0001824 ... P26373 37992713
    837014 8jdk:R (2.26) BS01 rna ? GO:0002181 ... P50914 37992713
    837015 8jdk:S (2.26) BS01 rna ? GO:0002181 ... P61313 37992713
    837016 8jdk:S (2.26) BS02 rna ? GO:0002181 ... P61313 37992713
    837017 8jdk:T (2.26) BS01 rna ? GO:0002181 ... P40429 37992713
    837018 8jdk:U (2.26) BS01 rna ? GO:0002181 ... P18621 37992713
    837019 8jdk:U (2.26) BS02 rna ? GO:0002181 ... P18621 37992713
    837020 8jdk:V (2.26) BS01 rna ? GO:0002181 ... Q07020 37992713
    837021 8jdk:V (2.26) BS02 MG ? GO:0002181 ... Q07020 37992713
    837022 8jdk:V (2.26) BS03 MG ? GO:0002181 ... Q07020 37992713
    837023 8jdk:W (2.26) BS01 rna ? GO:0002181 ... P84098 37992713
    837024 8jdk:W (2.26) BS02 rna ? GO:0002181 ... P84098 37992713
    837025 8jdk:X (2.26) BS01 rna ? GO:0002181 ... Q02543 37992713
    837026 8jdk:X (2.26) BS02 rna ? GO:0002181 ... Q02543 37992713
    837027 8jdk:Y (2.26) BS01 rna ? GO:0002181 ... P46778 37992713
    837028 8jdk:Y (2.26) BS02 rna ? GO:0002181 ... P46778 37992713
    837029 8jdk:Z (2.26) BS01 rna ? GO:0002181 ... P35268 37992713
    837030 8jdk:a (2.26) BS01 rna ? GO:0000122 ... P62829 37992713
    837031 8jdk:b (2.26) BS01 rna ? GO:0000027 ... P83731 37992713
    837032 8jdk:c (2.26) BS01 rna ? GO:0002181 ... P62750 37992713
    837033 8jdk:c (2.26) BS02 rna ? GO:0002181 ... P62750 37992713
    837034 8jdk:d (2.26) BS01 rna ? GO:0002181 ... P61254 37992713
    837035 8jdk:d (2.26) BS02 rna ? GO:0002181 ... P61254 37992713
    837036 8jdk:e (2.26) BS01 rna ? GO:0002181 ... P61353 37992713
    837037 8jdk:f (2.26) BS01 rna ? GO:0002181 ... P46776 37992713
    837038 8jdk:g (2.26) BS01 rna ? GO:0002181 ... P47914 37992713
    837039 8jdk:g (2.26) BS02 MG ? GO:0002181 ... P47914 37992713
    837040 8jdk:h (2.26) BS01 rna ? GO:0002181 ... P62888 37992713
    837041 8jdk:i (2.26) BS01 rna ? GO:0002181 ... P62899 37992713
    837042 8jdk:j (2.26) BS01 rna ? GO:0002181 ... P62910 37992713
    837043 8jdk:j (2.26) BS02 MG ? GO:0002181 ... P62910 37992713
    837044 8jdk:k (2.26) BS01 rna ? GO:0000049 ... P18077 37992713
    837045 8jdk:k (2.26) BS02 MG ? GO:0000049 ... P18077 37992713
    837046 8jdk:l (2.26) BS01 rna ? GO:0002181 ... P49207 37992713
    837047 8jdk:l (2.26) BS02 MG ? GO:0002181 ... P49207 37992713
    837048 8jdk:m (2.26) BS01 rna ? GO:0000463 ... P42766 37992713
    837049 8jdk:m (2.26) BS02 rna ? GO:0000463 ... P42766 37992713
    837050 8jdk:n (2.26) BS01 rna ? GO:0002181 ... Q9Y3U8 37992713
    837051 8jdk:o (2.26) BS01 rna ? GO:0002181 ... P61927 37992713
    837052 8jdk:o (2.26) BS02 rna ? GO:0002181 ... P61927 37992713
    837053 8jdk:o (2.26) BS03 ZN ? GO:0002181 ... P61927 37992713
    837054 8jdk:p (2.26) BS01 rna ? GO:0001501 ... P63173 37992713
    837055 8jdk:q (2.26) BS01 rna ? GO:0002181 ... P62891 37992713
    837056 8jdk:q (2.26) BS02 rna ? GO:0002181 ... P62891 37992713
    837057 8jdk:r (2.26) BS01 rna ? GO:0002181 ... P62987 37992713
    837058 8jdk:r (2.26) BS02 ZN ? GO:0002181 ... P62987 37992713
    837059 8jdk:t (2.26) BS01 rna ? GO:0002181 ... P83881 37992713
    837060 8jdk:t (2.26) BS02 ZN ? GO:0002181 ... P83881 37992713
    837061 8jdk:u (2.26) BS01 rna ? GO:0002181 ... P61513 37992713
    837062 8jdk:u (2.26) BS02 MG ? GO:0002181 ... P61513 37992713
    837063 8jdk:u (2.26) BS03 ZN ? GO:0002181 ... P61513 37992713
    837064 8jdk:v (2.26) BS01 rna ? GO:0002181 ... P46779 37992713
    837065 8jdk:x (2.26) BS01 rna ? GO:0000028 ... P08865 37992713
    837066 8jdk:y (2.26) BS01 rna ? GO:0002181 ... P61247 37992713
    837067 8jdk:z (2.26) BS01 rna ? GO:0002181 ... P15880 37992713
    837068 8jdl:0 (2.42) BS01 rna 4.2.99.18 GO:0000977 ... P23396 37992713
    837069 8jdl:1 (2.42) BS01 rna ? GO:0002181 ... P62701 37992713
    837070 8jdl:2 (2.42) BS01 rna ? GO:0000028 ... P46782 37992713
    837071 8jdl:2 (2.42) BS02 MG ? GO:0000028 ... P46782 37992713
    837072 8jdl:3 (2.42) BS01 rna ? GO:0000082 ... P62753 37992713
    837073 8jdl:4 (2.42) BS01 rna ? GO:0001843 ... P62081 37992713
    837074 8jdl:5 (2.42) BS01 rna ? GO:0000462 ... P62241 37992713
    837075 8jdl:5 (2.42) BS02 rna ? GO:0000462 ... P62241 37992713
    837076 8jdl:6 (2.42) BS01 rna ? GO:0002181 ... P46781 37992713
    837077 8jdl:7 (2.42) BS01 rna ? GO:0002181 ... P46783 37992713
    837078 8jdl:8 (2.42) BS01 rna ? GO:0002181 ... P62280 37992713
    837079 8jdl:9 (2.42) BS01 rna ? GO:0002181 ... P62277 37992713
    837080 8jdl:AA (2.42) BS01 rna ? GO:0000028 ... P62263 37992713
    837081 8jdl:AA (2.42) BS02 MG ? GO:0000028 ... P62263 37992713
    837082 8jdl:AB (2.42) BS01 rna ? GO:0000028 ... P62841 37992713
    837083 8jdl:AB (2.42) BS02 rna ? GO:0000028 ... P62841 37992713
    837084 8jdl:AB (2.42) BS03 rna ? GO:0000028 ... P62841 37992713
    837085 8jdl:AC (2.42) BS01 rna ? GO:0000462 ... P62249 37992713
    837086 8jdl:AD (2.42) BS01 rna ? GO:0002181 ... P08708 37992713
    837087 8jdl:AE (2.42) BS01 rna ? GO:0002181 ... P62269 37992713
    837088 8jdl:AF (2.42) BS01 rna ? GO:0000028 ... P39019 37992713
    837089 8jdl:AG (2.42) BS01 rna ? GO:0002181 ... P60866 37992713
    837090 8jdl:AI (2.42) BS01 rna ? GO:0002181 ... P62244 37992713
    837091 8jdl:AJ (2.42) BS01 rna ? GO:0002181 ... P62266 37992713
    837092 8jdl:AK (2.42) BS01 rna ? GO:0002181 ... P62847 37992713
    837093 8jdl:AL (2.42) BS01 rna ? GO:0002181 ... P62851 37992713
    837094 8jdl:AM (2.42) BS01 rna ? GO:0002181 ... P62854 37992713
    837095 8jdl:AM (2.42) BS02 ZN ? GO:0002181 ... P62854 37992713
    837096 8jdl:AN (2.42) BS01 rna ? GO:0000028 ... P42677 37992713
    837097 8jdl:AO (2.42) BS01 rna ? GO:0000028 ... P62857 37992713
    837098 8jdl:AP (2.42) BS01 rna ? GO:0002181 ... P62273 37992713
    837099 8jdl:AP (2.42) BS02 ZN ? GO:0002181 ... P62273 37992713
    837100 8jdl:AQ (2.42) BS01 rna ? GO:0003735 ... P62861 37992713
    837101 8jdl:AR (2.42) BS01 rna ? GO:0001891 ... P63244 37992713
    837102 8jdl:G (2.42) BS01 rna ? GO:0002181 ... P62917 37992713
    837103 8jdl:G (2.42) BS02 MG ? GO:0002181 ... P62917 37992713
    837104 8jdl:G (2.42) BS03 MG ? GO:0002181 ... P62917 37992713
    837105 8jdl:H (2.42) BS01 rna ? GO:0002181 ... P39023 37992713
    837106 8jdl:H (2.42) BS02 MG ? GO:0002181 ... P39023 37992713
    837107 8jdl:I (2.42) BS01 rna ? GO:0002181 ... P36578 37992713
    837108 8jdl:I (2.42) BS02 rna ? GO:0002181 ... P36578 37992713
    837109 8jdl:J (2.42) BS01 rna ? GO:0000027 ... P46777 37992713
    837110 8jdl:J (2.42) BS02 rna ? GO:0000027 ... P46777 37992713
    837111 8jdl:K (2.42) BS01 rna ? GO:0002181 ... Q02878 37992713
    837112 8jdl:L (2.42) BS01 rna ? GO:0000463 ... P18124 37992713
    837113 8jdl:L (2.42) BS02 rna ? GO:0000463 ... P18124 37992713
    837114 8jdl:M (2.42) BS01 rna ? GO:0000470 ... P62424 37992713
    837115 8jdl:M (2.42) BS02 rna ? GO:0000470 ... P62424 37992713
    837116 8jdl:N (2.42) BS01 rna ? GO:0002181 ... P32969 37992713
    837117 8jdl:N (2.42) BS02 MG ? GO:0002181 ... P32969 37992713
    837118 8jdl:O (2.42) BS01 rna ? GO:0000027 ... Q96L21 37992713
    837119 8jdl:O (2.42) BS02 rna ? GO:0000027 ... Q96L21 37992713
    837120 8jdl:P (2.42) BS01 rna ? GO:0000027 ... P62913 37992713
    837121 8jdl:P (2.42) BS02 rna ? GO:0000027 ... P62913 37992713
    837122 8jdl:P (2.42) BS03 rna ? GO:0000027 ... P62913 37992713
    837123 8jdl:Q (2.42) BS01 rna ? GO:0001824 ... P26373 37992713
    837124 8jdl:Q (2.42) BS02 rna ? GO:0001824 ... P26373 37992713
    837125 8jdl:R (2.42) BS01 rna ? GO:0002181 ... P50914 37992713
    837126 8jdl:S (2.42) BS01 rna ? GO:0002181 ... P61313 37992713
    837127 8jdl:S (2.42) BS02 rna ? GO:0002181 ... P61313 37992713
    837128 8jdl:T (2.42) BS01 rna ? GO:0002181 ... P40429 37992713
    837129 8jdl:U (2.42) BS01 rna ? GO:0002181 ... P18621 37992713
    837130 8jdl:U (2.42) BS02 rna ? GO:0002181 ... P18621 37992713
    837131 8jdl:V (2.42) BS01 rna ? GO:0002181 ... Q07020 37992713
    837132 8jdl:V (2.42) BS02 MG ? GO:0002181 ... Q07020 37992713
    837133 8jdl:V (2.42) BS03 MG ? GO:0002181 ... Q07020 37992713
    837134 8jdl:W (2.42) BS01 rna ? GO:0002181 ... P84098 37992713
    837135 8jdl:W (2.42) BS02 rna ? GO:0002181 ... P84098 37992713
    837136 8jdl:X (2.42) BS01 rna ? GO:0002181 ... Q02543 37992713
    837137 8jdl:X (2.42) BS02 rna ? GO:0002181 ... Q02543 37992713
    837138 8jdl:Y (2.42) BS01 rna ? GO:0002181 ... P46778 37992713
    837139 8jdl:Y (2.42) BS02 rna ? GO:0002181 ... P46778 37992713
    837140 8jdl:Z (2.42) BS01 rna ? GO:0002181 ... P35268 37992713
    837141 8jdl:a (2.42) BS01 rna ? GO:0000122 ... P62829 37992713
    837142 8jdl:b (2.42) BS01 rna ? GO:0000027 ... P83731 37992713
    837143 8jdl:c (2.42) BS01 rna ? GO:0002181 ... P62750 37992713
    837144 8jdl:c (2.42) BS02 rna ? GO:0002181 ... P62750 37992713
    837145 8jdl:d (2.42) BS01 rna ? GO:0002181 ... P61254 37992713
    837146 8jdl:d (2.42) BS02 rna ? GO:0002181 ... P61254 37992713
    837147 8jdl:e (2.42) BS01 rna ? GO:0002181 ... P61353 37992713
    837148 8jdl:f (2.42) BS01 rna ? GO:0002181 ... P46776 37992713
    837149 8jdl:g (2.42) BS01 rna ? GO:0002181 ... P47914 37992713
    837150 8jdl:g (2.42) BS02 MG ? GO:0002181 ... P47914 37992713
    837151 8jdl:h (2.42) BS01 rna ? GO:0002181 ... P62888 37992713
    837152 8jdl:i (2.42) BS01 rna ? GO:0002181 ... P62899 37992713
    837153 8jdl:j (2.42) BS01 rna ? GO:0002181 ... P62910 37992713
    837154 8jdl:j (2.42) BS02 MG ? GO:0002181 ... P62910 37992713
    837155 8jdl:k (2.42) BS01 rna ? GO:0000049 ... P18077 37992713
    837156 8jdl:k (2.42) BS02 MG ? GO:0000049 ... P18077 37992713
    837157 8jdl:l (2.42) BS01 rna ? GO:0002181 ... P49207 37992713
    837158 8jdl:l (2.42) BS02 MG ? GO:0002181 ... P49207 37992713
    837159 8jdl:m (2.42) BS01 rna ? GO:0000463 ... P42766 37992713
    837160 8jdl:m (2.42) BS02 rna ? GO:0000463 ... P42766 37992713
    837161 8jdl:n (2.42) BS01 rna ? GO:0002181 ... Q9Y3U8 37992713
    837162 8jdl:o (2.42) BS01 rna ? GO:0002181 ... P61927 37992713
    837163 8jdl:o (2.42) BS02 rna ? GO:0002181 ... P61927 37992713
    837164 8jdl:o (2.42) BS03 ZN ? GO:0002181 ... P61927 37992713
    837165 8jdl:p (2.42) BS01 rna ? GO:0001501 ... P63173 37992713
    837166 8jdl:q (2.42) BS01 rna ? GO:0002181 ... P62891 37992713
    837167 8jdl:q (2.42) BS02 rna ? GO:0002181 ... P62891 37992713
    837168 8jdl:r (2.42) BS01 rna ? GO:0002181 ... P62987 37992713
    837169 8jdl:r (2.42) BS02 ZN ? GO:0002181 ... P62987 37992713
    837170 8jdl:t (2.42) BS01 rna ? GO:0002181 ... P83881 37992713
    837171 8jdl:t (2.42) BS02 ZN ? GO:0002181 ... P83881 37992713
    837172 8jdl:u (2.42) BS01 rna ? GO:0002181 ... P61513 37992713
    837173 8jdl:u (2.42) BS02 ZN ? GO:0002181 ... P61513 37992713
    837174 8jdl:v (2.42) BS01 rna ? GO:0002181 ... P46779 37992713
    837175 8jdl:x (2.42) BS01 rna ? GO:0000028 ... P08865 37992713
    837176 8jdl:y (2.42) BS01 rna ? GO:0002181 ... P61247 37992713
    837177 8jdl:z (2.42) BS01 rna ? GO:0002181 ... P15880 37992713
    837178 8jdm:0 (2.67) BS01 rna 4.2.99.18 GO:0000977 ... P23396 37992713
    837179 8jdm:1 (2.67) BS01 rna ? GO:0002181 ... P62701 37992713
    837180 8jdm:2 (2.67) BS01 rna ? GO:0000028 ... P46782 37992713
    837181 8jdm:3 (2.67) BS01 rna ? GO:0000082 ... P62753 37992713
    837182 8jdm:4 (2.67) BS01 rna ? GO:0001843 ... P62081 37992713
    837183 8jdm:5 (2.67) BS01 rna ? GO:0000462 ... P62241 37992713
    837184 8jdm:5 (2.67) BS02 rna ? GO:0000462 ... P62241 37992713
    837185 8jdm:6 (2.67) BS01 rna ? GO:0002181 ... P46781 37992713
    837186 8jdm:7 (2.67) BS01 rna ? GO:0002181 ... P46783 37992713
    837187 8jdm:8 (2.67) BS01 rna ? GO:0002181 ... P62280 37992713
    837188 8jdm:9 (2.67) BS01 rna ? GO:0002181 ... P62277 37992713
    837189 8jdm:AA (2.67) BS01 rna ? GO:0000028 ... P62263 37992713
    837190 8jdm:AA (2.67) BS02 MG ? GO:0000028 ... P62263 37992713
    837191 8jdm:AB (2.67) BS01 rna ? GO:0000028 ... P62841 37992713
    837192 8jdm:AB (2.67) BS02 rna ? GO:0000028 ... P62841 37992713
    837193 8jdm:AC (2.67) BS01 rna ? GO:0000462 ... P62249 37992713
    837194 8jdm:AD (2.67) BS01 rna ? GO:0002181 ... P08708 37992713
    837195 8jdm:AE (2.67) BS01 rna ? GO:0002181 ... P62269 37992713
    837196 8jdm:AE (2.67) BS02 rna ? GO:0002181 ... P62269 37992713
    837197 8jdm:AF (2.67) BS01 rna ? GO:0000028 ... P39019 37992713
    837198 8jdm:AG (2.67) BS01 rna ? GO:0002181 ... P60866 37992713
    837199 8jdm:AI (2.67) BS01 rna ? GO:0002181 ... P62244 37992713
    837200 8jdm:AJ (2.67) BS01 rna ? GO:0002181 ... P62266 37992713

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).