SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    837201 8iyq:A (2.46) BS02 rna N/A GO:0003676 ... N/A 38811729
    837202 8iyq:A (2.46) BS03 dna N/A GO:0003676 ... N/A 38811729
    837203 8iys:A (2.95) BS01 GDP ? GO:0001664 ... P50148 37286793
    837204 8iys:R (2.95) BS01 YN9 ? GO:0001818 ... Q5NUL3 37286793
    837205 8iyt:A (1.7) BS01 S5R 2.3.1.50 GO:0004758 ... A7BFV6 38325740
    837206 8iyu:A (2.1) BS01 NI 4.99.1.11
    4.99.1.3
    GO:0009236 ... Q58380 39548701
    837207 8iyu:B (2.1) BS01 NI 4.99.1.11
    4.99.1.3
    GO:0009236 ... Q58380 39548701
    837208 8iyv:A (2.1) BS01 CA N/A GO:0004175 ... P00760 39216203
    837209 8iyv:A (2.1) BS02 FO9 N/A GO:0004175 ... P00760 39216203
    837210 8iyw:R (3.45) BS01 OKL ? GO:0001781 ... P08173
    Q8TDS4
    38431681
    837211 8iyx:C (3.34) BS01 S6R ? GO:0004930 ... Q9UPC5 37733739
    837212 8iz4:R (2.93) BS01 TJR ? GO:0004930 ... Q9UPC5 N/A
    837213 8iz4:R (2.93) BS02 SER ? GO:0004930 ... Q9UPC5 N/A
    837214 8iz4:R (2.93) BS03 CLR ? GO:0004930 ... Q9UPC5 N/A
    837215 8iz7:A (3.8) BS01 SUZ 7.6.2.-
    7.6.2.2
    7.6.2.3
    GO:0001409 ... O15439 37217525
    837216 8iz9:A (2.95) BS01 XPG 7.6.2.-
    7.6.2.2
    7.6.2.3
    GO:0001409 ... O15439 37217525
    837217 8iza:A (3.48) BS01 ATP 7.6.2.-
    7.6.2.2
    7.6.2.3
    GO:0001409 ... O15439 37217525
    837218 8iza:A (3.48) BS02 ATP 7.6.2.-
    7.6.2.2
    7.6.2.3
    GO:0001409 ... O15439 37217525
    837219 8izb:R (3.06) BS01 UBL ? GO:0004930 ... Q9BXC1 38048360
    837220 8izb:R (3.06) BS02 SER ? GO:0004930 ... Q9BXC1 38048360
    837221 8izb:R (3.06) BS03 CLR ? GO:0004930 ... Q9BXC1 38048360
    837222 8izb:R (3.06) BS04 CLR ? GO:0004930 ... Q9BXC1 38048360
    837223 8izc:A (1.45) BS01 S93 2.7.11.1
    2.7.11.26
    GO:0004672 ... P48730 N/A
    837224 8izc:B (1.45) BS01 S93 2.7.11.1
    2.7.11.26
    GO:0004672 ... P48730 N/A
    837225 8izd:A (3.09) BS01 9NY 2.3.1.297 GO:0005515 ... P28496 37953642
    837226 8izd:C (3.09) BS01 9NY 2.3.1.297 GO:0005515 ... P28496 37953642
    837227 8ize:A (1.4) BS01 S9R ? N/A O00481 37674084
    837228 8izg:A (1.6) BS01 SE6 ? N/A O00481 37674084
    837229 8izh:A (2.3) BS01 CA N/A GO:0004175 ... P00760 39216203
    837230 8izh:A (2.3) BS02 AGU N/A GO:0004175 ... P00760 39216203
    837231 8izh:A (2.3) BS03 AGU N/A GO:0004175 ... P00760 39216203
    837232 8izh:A (2.3) BS04 AGU N/A GO:0004175 ... P00760 39216203
    837233 8izi:A (2.1) BS01 CA N/A GO:0004175 ... P00760 39216203
    837234 8izi:A (2.1) BS02 SD9 N/A GO:0004175 ... P00760 39216203
    837235 8izj:A (1.6) BS01 AMP 2.4.2.7 GO:0000287 ... P69503 N/A
    837236 8izj:B (1.6) BS01 AMP 2.4.2.7 GO:0000287 ... P69503 N/A
    837237 8izk:A (2.0) BS01 CA N/A GO:0004175 ... P00760 39216203
    837238 8izk:A (2.0) BS02 GAI N/A GO:0004175 ... P00760 39216203
    837239 8izl:A (2.93) BS01 ZN 2.1.1.-
    2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-
    GO:0000166 ... C0JJA4 38760379
    837240 8izl:A (2.93) BS02 ZN 2.1.1.-
    2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-
    GO:0000166 ... C0JJA4 38760379
    837241 8izm:A (3.01) BS01 ZN 2.1.1.-
    2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-
    GO:0000166 ... C0JJA4 N/A
    837242 8izm:A (3.01) BS02 ZN 2.1.1.-
    2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-
    GO:0000166 ... C0JJA4 N/A
    837243 8izt:A (1.74) BS01 ZN ? N/A A0A7H0DNA4 38159644
    837244 8izy:A (2.5) BS01 9MF ? GO:0005216 ... O43526 37857637
    837245 8izy:A (2.5) BS02 9MF ? GO:0005216 ... O43526 37857637
    837246 8izy:A (2.5) BS03 9MF ? GO:0005216 ... O43526 37857637
    837247 8izy:B (2.5) BS01 9MF ? GO:0005216 ... O43526 37857637
    837248 8izy:B (2.5) BS02 9MF ? GO:0005216 ... O43526 37857637
    837249 8izy:B (2.5) BS03 9MF ? GO:0005216 ... O43526 37857637
    837250 8izy:C (2.5) BS01 9MF ? GO:0005216 ... O43526 37857637
    837251 8izy:C (2.5) BS02 9MF ? GO:0005216 ... O43526 37857637
    837252 8izy:C (2.5) BS03 9MF ? GO:0005216 ... O43526 37857637
    837253 8izy:D (2.5) BS01 9MF ? GO:0005216 ... O43526 37857637
    837254 8izy:D (2.5) BS02 9MF ? GO:0005216 ... O43526 37857637
    837255 8izy:D (2.5) BS03 9MF ? GO:0005216 ... O43526 37857637
    837256 8j00:A (3.0) BS01 P0T ? GO:0005216 ... O43526 37857637
    837257 8j00:A (3.0) BS02 P0T ? GO:0005216 ... O43526 37857637
    837258 8j00:A (3.0) BS03 P0T ? GO:0005216 ... O43526 37857637
    837259 8j00:B (3.0) BS01 P0T ? GO:0005216 ... O43526 37857637
    837260 8j00:B (3.0) BS02 P0T ? GO:0005216 ... O43526 37857637
    837261 8j00:B (3.0) BS03 P0T ? GO:0005216 ... O43526 37857637
    837262 8j00:C (3.0) BS01 P0T ? GO:0005216 ... O43526 37857637
    837263 8j00:C (3.0) BS02 P0T ? GO:0005216 ... O43526 37857637
    837264 8j00:C (3.0) BS03 P0T ? GO:0005216 ... O43526 37857637
    837265 8j00:D (3.0) BS01 P0T ? GO:0005216 ... O43526 37857637
    837266 8j00:D (3.0) BS02 P0T ? GO:0005216 ... O43526 37857637
    837267 8j00:D (3.0) BS03 P0T ? GO:0005216 ... O43526 37857637
    837268 8j01:A (3.1) BS01 P0T ? GO:0005216 ... O43526 37857637
    837269 8j01:A (3.1) BS02 PIO ? GO:0005216 ... O43526 37857637
    837270 8j01:A (3.1) BS03 P0T ? GO:0005216 ... O43526 37857637
    837271 8j01:A (3.1) BS04 PIO ? GO:0005216 ... O43526 37857637
    837272 8j01:B (3.1) BS01 PIO ? GO:0005216 ... O43526 37857637
    837273 8j01:B (3.1) BS02 PIO ? GO:0005216 ... O43526 37857637
    837274 8j01:B (3.1) BS03 P0T ? GO:0005216 ... O43526 37857637
    837275 8j01:D (3.1) BS01 PIO ? GO:0005216 ... O43526 37857637
    837276 8j01:D (3.1) BS02 PIO ? GO:0005216 ... O43526 37857637
    837277 8j01:D (3.1) BS03 P0T ? GO:0005216 ... O43526 37857637
    837278 8j01:G (3.1) BS01 P0T ? GO:0005216 ... O43526 37857637
    837279 8j01:G (3.1) BS02 PIO ? GO:0005216 ... O43526 37857637
    837280 8j01:G (3.1) BS03 P0T ? GO:0005216 ... O43526 37857637
    837281 8j01:G (3.1) BS04 PIO ? GO:0005216 ... O43526 37857637
    837282 8j02:A (3.5) BS01 PIO ? GO:0005216 ... O43526 37857637
    837283 8j02:A (3.5) BS02 P0T ? GO:0005216 ... O43526 37857637
    837284 8j02:A (3.5) BS03 PIO ? GO:0005216 ... O43526 37857637
    837285 8j02:B (3.5) BS01 PIO ? GO:0005216 ... O43526 37857637
    837286 8j02:B (3.5) BS02 PIO ? GO:0005216 ... O43526 37857637
    837287 8j02:B (3.5) BS03 P0T ? GO:0005216 ... O43526 37857637
    837288 8j02:D (3.5) BS01 PIO ? GO:0005216 ... O43526 37857637
    837289 8j02:D (3.5) BS02 PIO ? GO:0005216 ... O43526 37857637
    837290 8j02:D (3.5) BS03 P0T ? GO:0005216 ... O43526 37857637
    837291 8j02:G (3.5) BS01 P0T ? GO:0005216 ... O43526 37857637
    837292 8j02:G (3.5) BS02 PIO ? GO:0005216 ... O43526 37857637
    837293 8j02:G (3.5) BS03 PIO ? GO:0005216 ... O43526 37857637
    837294 8j03:A (2.7) BS01 P0T ? GO:0005216 ... O43526 37857637
    837295 8j03:A (2.7) BS02 P0T ? GO:0005216 ... O43526 37857637
    837296 8j03:D (2.7) BS01 P0T ? GO:0005216 ... O43526 37857637
    837297 8j03:D (2.7) BS02 P0T ? GO:0005216 ... O43526 37857637
    837298 8j03:G (2.7) BS01 P0T ? GO:0005216 ... O43526 37857637
    837299 8j03:G (2.7) BS02 P0T ? GO:0005216 ... O43526 37857637
    837300 8j03:I (2.7) BS01 P0T ? GO:0005216 ... O43526 37857637
    837301 8j03:I (2.7) BS02 P0T ? GO:0005216 ... O43526 37857637
    837302 8j04:A (2.7) BS01 9MF ? GO:0005216 ... O43526 37857637
    837303 8j04:A (2.7) BS02 9MF ? GO:0005216 ... O43526 37857637
    837304 8j04:A (2.7) BS03 9MF ? GO:0005216 ... O43526 37857637
    837305 8j04:B (2.7) BS01 9MF ? GO:0005216 ... O43526 37857637
    837306 8j04:B (2.7) BS02 9MF ? GO:0005216 ... O43526 37857637
    837307 8j04:B (2.7) BS03 9MF ? GO:0005216 ... O43526 37857637
    837308 8j04:D (2.7) BS01 9MF ? GO:0005216 ... O43526 37857637
    837309 8j04:D (2.7) BS02 9MF ? GO:0005216 ... O43526 37857637
    837310 8j04:D (2.7) BS03 9MF ? GO:0005216 ... O43526 37857637
    837311 8j04:G (2.7) BS01 9MF ? GO:0005216 ... O43526 37857637
    837312 8j04:G (2.7) BS02 9MF ? GO:0005216 ... O43526 37857637
    837313 8j04:G (2.7) BS03 9MF ? GO:0005216 ... O43526 37857637
    837314 8j07:8P (4.1) BS01 peptide ? GO:0005634 ... Q9UIF3 37258679
    837315 8j07:AB (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    837316 8j07:AC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    837317 8j07:AD (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    837318 8j07:AE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    837319 8j07:AF (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    837320 8j07:AG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    837321 8j07:AH (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    837322 8j07:AI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    837323 8j07:AJ (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    837324 8j07:AK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    837325 8j07:AK (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 37258679
    837326 8j07:AL (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    837327 8j07:AM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    837328 8j07:AN (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    837329 8j07:AO (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    837330 8j07:AO (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 37258679
    837331 8j07:AP (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    837332 8j07:AQ (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    837333 8j07:AR (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    837334 8j07:AS (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    837335 8j07:AT (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    837336 8j07:AU (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    837337 8j07:AV (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    837338 8j07:AW (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    837339 8j07:AX (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    837340 8j07:AY (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    837341 8j07:AZ (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    837342 8j07:BA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    837343 8j07:BB (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    837344 8j07:BC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    837345 8j07:BD (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    837346 8j07:BE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    837347 8j07:BF (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    837348 8j07:BG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    837349 8j07:BH (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    837350 8j07:BI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    837351 8j07:BJ (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    837352 8j07:BK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    837353 8j07:BL (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    837354 8j07:BM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    837355 8j07:BN (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    837356 8j07:BO (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    837357 8j07:BP (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    837358 8j07:BQ (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    837359 8j07:BR (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    837360 8j07:BS (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    837361 8j07:BS (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 37258679
    837362 8j07:BT (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    837363 8j07:BU (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    837364 8j07:BV (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    837365 8j07:BW (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    837366 8j07:BX (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    837367 8j07:BY (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    837368 8j07:CB (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    837369 8j07:CC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    837370 8j07:CD (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    837371 8j07:CE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    837372 8j07:CE (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 37258679
    837373 8j07:CF (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    837374 8j07:CG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    837375 8j07:CH (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    837376 8j07:CI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    837377 8j07:CJ (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    837378 8j07:CK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    837379 8j07:CL (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    837380 8j07:CM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    837381 8j07:CN (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    837382 8j07:CO (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    837383 8j07:CP (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    837384 8j07:CQ (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    837385 8j07:CR (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    837386 8j07:CR (4.1) BS02 GTP ? GO:0000226 ... P68371 37258679
    837387 8j07:CS (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    837388 8j07:CT (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    837389 8j07:CU (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    837390 8j07:CV (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    837391 8j07:CW (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    837392 8j07:CX (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    837393 8j07:CY (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    837394 8j07:CZ (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    837395 8j07:DB (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    837396 8j07:DB (4.1) BS02 GTP ? GO:0000226 ... P68371 37258679
    837397 8j07:DC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    837398 8j07:DC (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 37258679
    837399 8j07:DD (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    837400 8j07:DE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).