SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    837201 8jdm:AK (2.67) BS01 rna ? GO:0002181 ... P62847 37992713
    837202 8jdm:AL (2.67) BS01 rna ? GO:0002181 ... P62851 37992713
    837203 8jdm:AM (2.67) BS01 rna ? GO:0002181 ... P62854 37992713
    837204 8jdm:AN (2.67) BS01 rna ? GO:0000028 ... P42677 37992713
    837205 8jdm:AO (2.67) BS01 rna ? GO:0000028 ... P62857 37992713
    837206 8jdm:AP (2.67) BS01 rna ? GO:0002181 ... P62273 37992713
    837207 8jdm:AQ (2.67) BS01 rna ? GO:0003735 ... P62861 37992713
    837208 8jdm:AR (2.67) BS01 rna ? GO:0001891 ... P63244 37992713
    837209 8jdm:G (2.67) BS01 rna ? GO:0002181 ... P62917 37992713
    837210 8jdm:G (2.67) BS02 MG ? GO:0002181 ... P62917 37992713
    837211 8jdm:H (2.67) BS01 rna ? GO:0002181 ... P39023 37992713
    837212 8jdm:H (2.67) BS02 MG ? GO:0002181 ... P39023 37992713
    837213 8jdm:I (2.67) BS01 rna ? GO:0002181 ... P36578 37992713
    837214 8jdm:I (2.67) BS02 rna ? GO:0002181 ... P36578 37992713
    837215 8jdm:J (2.67) BS01 rna ? GO:0000027 ... P46777 37992713
    837216 8jdm:J (2.67) BS02 rna ? GO:0000027 ... P46777 37992713
    837217 8jdm:K (2.67) BS01 rna ? GO:0002181 ... Q02878 37992713
    837218 8jdm:L (2.67) BS01 rna ? GO:0000463 ... P18124 37992713
    837219 8jdm:L (2.67) BS02 rna ? GO:0000463 ... P18124 37992713
    837220 8jdm:M (2.67) BS01 rna ? GO:0000470 ... P62424 37992713
    837221 8jdm:M (2.67) BS02 rna ? GO:0000470 ... P62424 37992713
    837222 8jdm:N (2.67) BS01 rna ? GO:0002181 ... P32969 37992713
    837223 8jdm:N (2.67) BS02 MG ? GO:0002181 ... P32969 37992713
    837224 8jdm:O (2.67) BS01 rna ? GO:0000027 ... Q96L21 37992713
    837225 8jdm:O (2.67) BS02 rna ? GO:0000027 ... Q96L21 37992713
    837226 8jdm:O (2.67) BS03 rna ? GO:0000027 ... Q96L21 37992713
    837227 8jdm:P (2.67) BS01 rna ? GO:0000027 ... P62913 37992713
    837228 8jdm:P (2.67) BS02 rna ? GO:0000027 ... P62913 37992713
    837229 8jdm:Q (2.67) BS01 rna ? GO:0001824 ... P26373 37992713
    837230 8jdm:Q (2.67) BS02 rna ? GO:0001824 ... P26373 37992713
    837231 8jdm:R (2.67) BS01 rna ? GO:0002181 ... P50914 37992713
    837232 8jdm:S (2.67) BS01 rna ? GO:0002181 ... P61313 37992713
    837233 8jdm:S (2.67) BS02 rna ? GO:0002181 ... P61313 37992713
    837234 8jdm:T (2.67) BS01 rna ? GO:0002181 ... P40429 37992713
    837235 8jdm:U (2.67) BS01 rna ? GO:0002181 ... P18621 37992713
    837236 8jdm:U (2.67) BS02 rna ? GO:0002181 ... P18621 37992713
    837237 8jdm:V (2.67) BS01 rna ? GO:0002181 ... Q07020 37992713
    837238 8jdm:V (2.67) BS02 MG ? GO:0002181 ... Q07020 37992713
    837239 8jdm:V (2.67) BS03 MG ? GO:0002181 ... Q07020 37992713
    837240 8jdm:W (2.67) BS01 rna ? GO:0002181 ... P84098 37992713
    837241 8jdm:W (2.67) BS02 rna ? GO:0002181 ... P84098 37992713
    837242 8jdm:X (2.67) BS01 rna ? GO:0002181 ... Q02543 37992713
    837243 8jdm:X (2.67) BS02 rna ? GO:0002181 ... Q02543 37992713
    837244 8jdm:Y (2.67) BS01 rna ? GO:0002181 ... P46778 37992713
    837245 8jdm:Y (2.67) BS02 rna ? GO:0002181 ... P46778 37992713
    837246 8jdm:Z (2.67) BS01 rna ? GO:0002181 ... P35268 37992713
    837247 8jdm:a (2.67) BS01 rna ? GO:0000122 ... P62829 37992713
    837248 8jdm:a (2.67) BS02 rna ? GO:0000122 ... P62829 37992713
    837249 8jdm:b (2.67) BS01 rna ? GO:0000027 ... P83731 37992713
    837250 8jdm:c (2.67) BS01 rna ? GO:0002181 ... P62750 37992713
    837251 8jdm:c (2.67) BS02 rna ? GO:0002181 ... P62750 37992713
    837252 8jdm:d (2.67) BS01 rna ? GO:0002181 ... P61254 37992713
    837253 8jdm:d (2.67) BS02 rna ? GO:0002181 ... P61254 37992713
    837254 8jdm:e (2.67) BS01 rna ? GO:0002181 ... P61353 37992713
    837255 8jdm:f (2.67) BS01 rna ? GO:0002181 ... P46776 37992713
    837256 8jdm:g (2.67) BS01 rna ? GO:0002181 ... P47914 37992713
    837257 8jdm:h (2.67) BS01 rna ? GO:0002181 ... P62888 37992713
    837258 8jdm:i (2.67) BS01 rna ? GO:0002181 ... P62899 37992713
    837259 8jdm:j (2.67) BS01 rna ? GO:0002181 ... P62910 37992713
    837260 8jdm:j (2.67) BS02 MG ? GO:0002181 ... P62910 37992713
    837261 8jdm:k (2.67) BS01 rna ? GO:0000049 ... P18077 37992713
    837262 8jdm:k (2.67) BS02 MG ? GO:0000049 ... P18077 37992713
    837263 8jdm:l (2.67) BS01 rna ? GO:0002181 ... P49207 37992713
    837264 8jdm:l (2.67) BS02 MG ? GO:0002181 ... P49207 37992713
    837265 8jdm:m (2.67) BS01 rna ? GO:0000463 ... P42766 37992713
    837266 8jdm:m (2.67) BS02 rna ? GO:0000463 ... P42766 37992713
    837267 8jdm:n (2.67) BS01 rna ? GO:0002181 ... Q9Y3U8 37992713
    837268 8jdm:o (2.67) BS01 rna ? GO:0002181 ... P61927 37992713
    837269 8jdm:o (2.67) BS02 rna ? GO:0002181 ... P61927 37992713
    837270 8jdm:o (2.67) BS03 ZN ? GO:0002181 ... P61927 37992713
    837271 8jdm:p (2.67) BS01 rna ? GO:0001501 ... P63173 37992713
    837272 8jdm:q (2.67) BS01 rna ? GO:0002181 ... P62891 37992713
    837273 8jdm:q (2.67) BS02 rna ? GO:0002181 ... P62891 37992713
    837274 8jdm:r (2.67) BS01 rna ? GO:0002181 ... P62987 37992713
    837275 8jdm:r (2.67) BS02 ZN ? GO:0002181 ... P62987 37992713
    837276 8jdm:t (2.67) BS01 rna ? GO:0002181 ... P83881 37992713
    837277 8jdm:t (2.67) BS02 rna ? GO:0002181 ... P83881 37992713
    837278 8jdm:t (2.67) BS03 ZN ? GO:0002181 ... P83881 37992713
    837279 8jdm:u (2.67) BS01 rna ? GO:0002181 ... P61513 37992713
    837280 8jdm:u (2.67) BS02 ZN ? GO:0002181 ... P61513 37992713
    837281 8jdm:v (2.67) BS01 rna ? GO:0002181 ... P46779 37992713
    837282 8jdm:x (2.67) BS01 rna ? GO:0000028 ... P08865 37992713
    837283 8jdm:y (2.67) BS01 rna ? GO:0002181 ... P61247 37992713
    837284 8jdm:z (2.67) BS01 rna ? GO:0002181 ... P15880 37992713
    837285 8jdn:A (1.56) BS01 FAD 1.1.2.4 GO:0003824 ... Q7TNG8 37863926
    837286 8jdn:A (1.56) BS02 UE3 1.1.2.4 GO:0003824 ... Q7TNG8 37863926
    837287 8jdo:A (1.72) BS01 7N6 1.1.2.4 GO:0003824 ... Q7TNG8 37863926
    837288 8jdo:A (1.72) BS02 FAD 1.1.2.4 GO:0003824 ... Q7TNG8 37863926
    837289 8jdp:A (1.6) BS01 FAD 1.1.2.4 GO:0003824 ... Q7TNG8 37863926
    837290 8jdp:A (1.6) BS02 VAD 1.1.2.4 GO:0003824 ... Q7TNG8 37863926
    837291 8jdq:A (1.39) BS01 FAD 1.1.2.4 GO:0003824 ... Q7TNG8 37863926
    837292 8jdq:A (1.39) BS02 2RH 1.1.2.4 GO:0003824 ... Q7TNG8 37863926
    837293 8jdr:A (1.64) BS01 FAD 1.1.2.4 GO:0003824 ... Q7TNG8 37863926
    837294 8jdr:A (1.64) BS02 UEI 1.1.2.4 GO:0003824 ... Q7TNG8 37863926
    837295 8jds:A (1.636) BS01 FAD 1.1.2.4 GO:0003824 ... Q7TNG8 37863926
    837296 8jds:A (1.636) BS02 MN 1.1.2.4 GO:0003824 ... Q7TNG8 37863926
    837297 8jds:A (1.636) BS03 PYR 1.1.2.4 GO:0003824 ... Q7TNG8 37863926
    837298 8jdt:A (1.55) BS01 FAD 1.1.2.4 GO:0003824 ... Q7TNG8 37863926
    837299 8jdt:A (1.55) BS02 2KT 1.1.2.4 GO:0003824 ... Q7TNG8 37863926
    837300 8jdt:A (1.55) BS03 MN 1.1.2.4 GO:0003824 ... Q7TNG8 37863926
    837301 8jdu:A (1.67) BS01 FAD 1.1.2.4 GO:0003824 ... Q7TNG8 37863926
    837302 8jdu:A (1.67) BS02 MN 1.1.2.4 GO:0003824 ... Q7TNG8 37863926
    837303 8jdu:A (1.67) BS03 69O 1.1.2.4 GO:0003824 ... Q7TNG8 37863926
    837304 8jdv:A (1.96) BS01 FAD 1.1.2.4 GO:0003824 ... Q7TNG8 37863926
    837305 8jdv:A (1.96) BS02 MN 1.1.2.4 GO:0003824 ... Q7TNG8 37863926
    837306 8jdv:A (1.96) BS03 7N5 1.1.2.4 GO:0003824 ... Q7TNG8 37863926
    837307 8jdw:A (2.3) BS01 ALA 2.1.4.1 GO:0005515 ... P50440 9915841
    837308 8jdx:A (1.79) BS01 FAD 1.1.2.4 GO:0003824 ... Q7TNG8 37863926
    837309 8jdx:A (1.79) BS02 MN 1.1.2.4 GO:0003824 ... Q7TNG8 37863926
    837310 8jdx:A (1.79) BS03 KIV 1.1.2.4 GO:0003824 ... Q7TNG8 37863926
    837311 8jdy:A (1.59) BS01 FAD 1.1.2.4 GO:0003824 ... Q7TNG8 37863926
    837312 8jdy:A (1.59) BS02 MN 1.1.2.4 GO:0003824 ... Q7TNG8 37863926
    837313 8jdy:A (1.59) BS03 COI 1.1.2.4 GO:0003824 ... Q7TNG8 37863926
    837314 8jdz:A (1.56) BS01 FAD 1.1.2.4 GO:0003824 ... Q7TNG8 37863926
    837315 8jdz:A (1.56) BS02 MN 1.1.2.4 GO:0003824 ... Q7TNG8 37863926
    837316 8jdz:A (1.56) BS03 1QQ 1.1.2.4 GO:0003824 ... Q7TNG8 37863926
    837317 8je0:A (2.9) BS01 ZN ? GO:0016787 ... A0A9E8ZAQ2 N/A
    837318 8je0:B (2.9) BS01 ZN ? GO:0016787 ... A0A9E8ZAQ2 N/A
    837319 8je0:C (2.9) BS01 ZN ? GO:0016787 ... A0A9E8ZAQ2 N/A
    837320 8je0:D (2.9) BS01 ZN ? GO:0016787 ... A0A9E8ZAQ2 N/A
    837321 8je1:A (3.95) BS01 peptide ? GO:0000082 ... Q13617 38360992
    837322 8je1:I (3.95) BS01 ZN ? GO:0000151 ... Q9UK73 38360992
    837323 8je2:D (3.63) BS01 peptide ? GO:0000151 ... Q9UK73 38360992
    837324 8je2:D (3.63) BS02 ZN ? GO:0000151 ... Q9UK73 38360992
    837325 8je4:A (2.19) BS01 PIS ? GO:0016740 ... A0A372DCN7 37877712
    837326 8je4:B (2.19) BS01 PIS ? GO:0016740 ... A0A372DCN7 37877712
    837327 8je5:A (2.57) BS01 HFG N/A N/A A0A182M1F8 N/A
    837328 8je5:A (2.57) BS02 ZN N/A N/A A0A182M1F8 N/A
    837329 8je5:B (2.57) BS01 HFG N/A N/A A0A182M1F8 N/A
    837330 8je5:B (2.57) BS02 ZN N/A N/A A0A182M1F8 N/A
    837331 8je6:A (2.883) BS01 ANP N/A N/A A0A182M1F8 N/A
    837332 8je6:A (2.883) BS02 HFG N/A N/A A0A182M1F8 N/A
    837333 8je6:A (2.883) BS03 ZN N/A N/A A0A182M1F8 N/A
    837334 8je6:B (2.883) BS01 ANP N/A N/A A0A182M1F8 N/A
    837335 8je6:B (2.883) BS02 HFG N/A N/A A0A182M1F8 N/A
    837336 8je6:B (2.883) BS03 ZN N/A N/A A0A182M1F8 N/A
    837337 8je7:A (2.14) BS01 ZN N/A N/A A0A182M1F8 N/A
    837338 8je7:A (2.14) BS02 HFG N/A N/A A0A182M1F8 N/A
    837339 8je7:A (2.14) BS03 JE6 N/A N/A A0A182M1F8 N/A
    837340 8je7:B (2.14) BS01 ZN N/A N/A A0A182M1F8 N/A
    837341 8je7:B (2.14) BS02 HFG N/A N/A A0A182M1F8 N/A
    837342 8je7:B (2.14) BS03 JE6 N/A N/A A0A182M1F8 N/A
    837343 8je9:A (1.0) BS01 MAN ? GO:0046872 ... K1QRB6 37793172
    837344 8je9:A (1.0) BS02 MAN ? GO:0046872 ... K1QRB6 37793172
    837345 8je9:B (1.0) BS01 MAN ? GO:0046872 ... K1QRB6 37793172
    837346 8je9:B (1.0) BS02 MAN ? GO:0046872 ... K1QRB6 37793172
    837347 8je9:D (1.0) BS01 MAN ? GO:0046872 ... K1QRB6 37793172
    837348 8jea:A (0.97) BS01 MAN ? GO:0046872 ... K1QRB6 37793172
    837349 8jea:A (0.97) BS02 MAN ? GO:0046872 ... K1QRB6 37793172
    837350 8jea:B (0.97) BS01 MAN ? GO:0046872 ... K1QRB6 37793172
    837351 8jea:B (0.97) BS02 MAN ? GO:0046872 ... K1QRB6 37793172
    837352 8jea:D (0.97) BS01 MAN ? GO:0046872 ... K1QRB6 37793172
    837353 8jeb:A (1.3) BS01 MAN ? GO:0046872 ... K1QRB6 37793172
    837354 8jeb:A (1.3) BS02 MAN ? GO:0046872 ... K1QRB6 37793172
    837355 8jeb:B (1.3) BS01 MAN ? GO:0046872 ... K1QRB6 37793172
    837356 8jeb:B (1.3) BS02 MAN ? GO:0046872 ... K1QRB6 37793172
    837357 8jee:A (2.96) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A
    837358 8jee:A (2.96) BS02 U6X 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A
    837359 8jef:A (2.96) BS01 3HO N/A GO:0004930 ... P49019 39427321
    837360 8jei:A (2.73) BS01 CW3 N/A GO:0004930 ... P49019 39427321
    837361 8jej:A (2.5) BS01 FAD 1.1.5.14 GO:0005886 ... M1VMF7 N/A
    837362 8jej:A (2.5) BS02 F3S 1.1.5.14 GO:0005886 ... M1VMF7 N/A
    837363 8jej:C (2.5) BS01 HEC ? GO:0005506 ... M1V1V5 N/A
    837364 8jej:C (2.5) BS02 HEC ? GO:0005506 ... M1V1V5 N/A
    837365 8jej:C (2.5) BS03 HEC ? GO:0005506 ... M1V1V5 N/A
    837366 8jej:C (2.5) BS04 U10 ? GO:0005506 ... M1V1V5 N/A
    837367 8jek:A (2.7) BS01 FAD 1.1.5.14 GO:0005886 ... M1VMF7 N/A
    837368 8jek:A (2.7) BS02 F3S 1.1.5.14 GO:0005886 ... M1VMF7 N/A
    837369 8jek:C (2.7) BS01 HEC ? GO:0005506 ... M1V1V5 N/A
    837370 8jek:C (2.7) BS02 HEC ? GO:0005506 ... M1V1V5 N/A
    837371 8jek:C (2.7) BS03 HEC ? GO:0005506 ... M1V1V5 N/A
    837372 8jek:C (2.7) BS04 U10 ? GO:0005506 ... M1V1V5 N/A
    837373 8jem:A (3.23) BS01 ASW 2.3.1.- GO:0005886 ... Q5M4V4 38649359
    837374 8jem:A (3.23) BS02 PGT 2.3.1.- GO:0005886 ... Q5M4V4 38649359
    837375 8jem:A (3.23) BS03 PGT 2.3.1.- GO:0005886 ... Q5M4V4 38649359
    837376 8jem:B (3.23) BS01 PGT 2.3.1.- GO:0005886 ... Q5M4V4 38649359
    837377 8jem:B (3.23) BS02 ASW 2.3.1.- GO:0005886 ... Q5M4V4 38649359
    837378 8jem:B (3.23) BS03 PGT 2.3.1.- GO:0005886 ... Q5M4V4 38649359
    837379 8jem:B (3.23) BS04 PGT 2.3.1.- GO:0005886 ... Q5M4V4 38649359
    837380 8jem:C (3.23) BS01 ASW 2.3.1.- GO:0005886 ... Q5M4V4 38649359
    837381 8jem:C (3.23) BS02 PGT 2.3.1.- GO:0005886 ... Q5M4V4 38649359
    837382 8jem:C (3.23) BS03 PGT 2.3.1.- GO:0005886 ... Q5M4V4 38649359
    837383 8jem:D (3.23) BS01 PGT 2.3.1.- GO:0005886 ... Q5M4V4 38649359
    837384 8jem:D (3.23) BS02 ASW 2.3.1.- GO:0005886 ... Q5M4V4 38649359
    837385 8jem:D (3.23) BS03 PGT 2.3.1.- GO:0005886 ... Q5M4V4 38649359
    837386 8jem:D (3.23) BS04 PGT 2.3.1.- GO:0005886 ... Q5M4V4 38649359
    837387 8jer:R (3.45) BS01 OJX ? GO:0001781 ... P08173
    Q8TDS4
    38431681
    837388 8jes:A (3.42) BS01 PGT 2.3.1.- GO:0005886 ... Q5M4V4 38649359
    837389 8jes:A (3.42) BS02 PGT 2.3.1.- GO:0005886 ... Q5M4V4 38649359
    837390 8jes:B (3.42) BS01 PGT 2.3.1.- GO:0005886 ... Q5M4V4 38649359
    837391 8jes:C (3.42) BS01 PGT 2.3.1.- GO:0005886 ... Q5M4V4 38649359
    837392 8jes:C (3.42) BS02 PGT 2.3.1.- GO:0005886 ... Q5M4V4 38649359
    837393 8jes:D (3.42) BS01 PGT 2.3.1.- GO:0005886 ... Q5M4V4 38649359
    837394 8jev:A (3.06) BS01 CL N/A GO:0005247 ... P51791 39107281
    837395 8jev:A (3.06) BS02 CL N/A GO:0005247 ... P51791 39107281
    837396 8jev:B (3.06) BS01 CL N/A GO:0005247 ... P51791 39107281
    837397 8jev:B (3.06) BS02 CL N/A GO:0005247 ... P51791 39107281
    837398 8jew:A (2.49) BS01 ASC ? GO:0005515 ... Q9UHI7 38956111
    837399 8jew:A (2.49) BS02 NA ? GO:0005515 ... Q9UHI7 38956111
    837400 8jew:A (2.49) BS03 NA ? GO:0005515 ... Q9UHI7 38956111

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).