SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    837401 8jew:A (2.49) BS04 LBN ? GO:0005515 ... Q9UHI7 38956111
    837402 8jew:A (2.49) BS05 AV0 ? GO:0005515 ... Q9UHI7 38956111
    837403 8jew:A (2.49) BS06 CLR ? GO:0005515 ... Q9UHI7 38956111
    837404 8jew:A (2.49) BS07 CLR ? GO:0005515 ... Q9UHI7 38956111
    837405 8jez:A (2.6) BS01 LBN N/A GO:0005515 ... Q9UHI7 38956111
    837406 8jez:A (2.6) BS02 AV0 N/A GO:0005515 ... Q9UHI7 38956111
    837407 8jez:A (2.6) BS03 CLR N/A GO:0005515 ... Q9UHI7 38956111
    837408 8jez:A (2.6) BS04 CLR N/A GO:0005515 ... Q9UHI7 38956111
    837409 8jf1:A (2.85) BS01 AV0 ? GO:0005515 ... Q9UHI7 38956111
    837410 8jf1:A (2.85) BS02 AV0 ? GO:0005515 ... Q9UHI7 38956111
    837411 8jf1:A (2.85) BS03 AV0 ? GO:0005515 ... Q9UHI7 38956111
    837412 8jf1:A (2.85) BS04 Y01 ? GO:0005515 ... Q9UHI7 38956111
    837413 8jf1:A (2.85) BS05 Y01 ? GO:0005515 ... Q9UHI7 38956111
    837414 8jf1:A (2.85) BS06 CLR ? GO:0005515 ... Q9UHI7 38956111
    837415 8jf2:A (3.5) BS01 PGT 2.3.1.- GO:0005886 ... Q5M4V4 38649359
    837416 8jf2:A (3.5) BS02 PGT 2.3.1.- GO:0005886 ... Q5M4V4 38649359
    837417 8jf2:B (3.5) BS01 PGT 2.3.1.- GO:0005886 ... Q5M4V4 38649359
    837418 8jf2:C (3.5) BS01 PGT 2.3.1.- GO:0005886 ... Q5M4V4 38649359
    837419 8jf2:D (3.5) BS01 PGT 2.3.1.- GO:0005886 ... Q5M4V4 38649359
    837420 8jf3:A (2.84648) BS01 C0N 2.7.10.2 GO:0004672 ... P12931 38248139
    837421 8jf3:B (2.84648) BS01 C0N 2.7.10.2 GO:0004672 ... P12931 38248139
    837422 8jf4:A (2.89288) BS01 C0N 2.7.11.1 GO:0000212 ... O14965 38248139
    837423 8jf5:A (3.2) BS01 FAD 1.14.99.66 GO:0005634 ... O60341 N/A
    837424 8jf5:A (3.2) BS02 UEU 1.14.99.66 GO:0005634 ... O60341 N/A
    837425 8jfa:A (2.55) BS01 NAP N/A GO:0004316 ... N/A 37779101
    837426 8jfa:B (2.55) BS01 NAP N/A GO:0004316 ... N/A 37779101
    837427 8jfa:C (2.55) BS01 NAP N/A GO:0004316 ... N/A 37779101
    837428 8jfa:D (2.55) BS01 NAP N/A GO:0004316 ... N/A 37779101
    837429 8jfa:E (2.55) BS01 NAP N/A GO:0004316 ... N/A 37779101
    837430 8jfa:F (2.55) BS01 NAP N/A GO:0004316 ... N/A 37779101
    837431 8jfb:A (2.65) BS01 U86 1.5.1.3
    2.1.1.45
    GO:0000166 ... D9N170 37731689
    837432 8jfb:A (2.65) BS02 NDP 1.5.1.3
    2.1.1.45
    GO:0000166 ... D9N170 37731689
    837433 8jfb:A (2.65) BS03 UMP 1.5.1.3
    2.1.1.45
    GO:0000166 ... D9N170 37731689
    837434 8jfb:A (2.65) BS04 UMP 1.5.1.3
    2.1.1.45
    GO:0000166 ... D9N170 37731689
    837435 8jfb:B (2.65) BS01 UMP 1.5.1.3
    2.1.1.45
    GO:0000166 ... D9N170 37731689
    837436 8jfb:B (2.65) BS02 NDP 1.5.1.3
    2.1.1.45
    GO:0000166 ... D9N170 37731689
    837437 8jfb:B (2.65) BS03 U86 1.5.1.3
    2.1.1.45
    GO:0000166 ... D9N170 37731689
    837438 8jfb:B (2.65) BS04 UMP 1.5.1.3
    2.1.1.45
    GO:0000166 ... D9N170 37731689
    837439 8jfc:A (2.3) BS01 NDP 1.5.1.3
    2.1.1.45
    GO:0000166 ... D9N170 37731689
    837440 8jfc:A (2.3) BS02 UMP 1.5.1.3
    2.1.1.45
    GO:0000166 ... D9N170 37731689
    837441 8jfc:A (2.3) BS03 U8I 1.5.1.3
    2.1.1.45
    GO:0000166 ... D9N170 37731689
    837442 8jfc:A (2.3) BS04 UMP 1.5.1.3
    2.1.1.45
    GO:0000166 ... D9N170 37731689
    837443 8jfc:B (2.3) BS01 UMP 1.5.1.3
    2.1.1.45
    GO:0000166 ... D9N170 37731689
    837444 8jfc:B (2.3) BS02 UMP 1.5.1.3
    2.1.1.45
    GO:0000166 ... D9N170 37731689
    837445 8jfc:B (2.3) BS03 U8I 1.5.1.3
    2.1.1.45
    GO:0000166 ... D9N170 37731689
    837446 8jfc:B (2.3) BS04 NDP 1.5.1.3
    2.1.1.45
    GO:0000166 ... D9N170 37731689
    837447 8jfd:A (2.3) BS01 NDP 1.5.1.3
    2.1.1.45
    GO:0000166 ... D9N170 37731689
    837448 8jfd:A (2.3) BS02 UMP 1.5.1.3
    2.1.1.45
    GO:0000166 ... D9N170 37731689
    837449 8jfd:A (2.3) BS03 U8Y 1.5.1.3
    2.1.1.45
    GO:0000166 ... D9N170 37731689
    837450 8jfd:A (2.3) BS04 UMP 1.5.1.3
    2.1.1.45
    GO:0000166 ... D9N170 37731689
    837451 8jfd:B (2.3) BS01 UMP 1.5.1.3
    2.1.1.45
    GO:0000166 ... D9N170 37731689
    837452 8jfd:B (2.3) BS02 NDP 1.5.1.3
    2.1.1.45
    GO:0000166 ... D9N170 37731689
    837453 8jfd:B (2.3) BS03 UMP 1.5.1.3
    2.1.1.45
    GO:0000166 ... D9N170 37731689
    837454 8jfd:B (2.3) BS04 U8Y 1.5.1.3
    2.1.1.45
    GO:0000166 ... D9N170 37731689
    837455 8jff:A (2.89) BS01 EPE ? GO:0000976 ... A0A454A0X5 37805153
    837456 8jff:A (2.89) BS02 EPE ? GO:0000976 ... A0A454A0X5 37805153
    837457 8jff:B (2.89) BS01 EPE ? GO:0000976 ... A0A454A0X5 37805153
    837458 8jfg:A (2.83) BS01 NAP N/A GO:0004316 ... N/A 37779101
    837459 8jfg:A (2.83) BS02 UHC N/A GO:0004316 ... N/A 37779101
    837460 8jfg:B (2.83) BS01 NAP N/A GO:0004316 ... N/A 37779101
    837461 8jfg:C (2.83) BS01 NAP N/A GO:0004316 ... N/A 37779101
    837462 8jfg:D (2.83) BS01 NAP N/A GO:0004316 ... N/A 37779101
    837463 8jfg:E (2.83) BS01 NAP N/A GO:0004316 ... N/A 37779101
    837464 8jfg:F (2.83) BS01 NAP N/A GO:0004316 ... N/A 37779101
    837465 8jfh:A (1.8) BS01 NAP N/A GO:0004316 ... N/A 37779101
    837466 8jfh:B (1.8) BS01 NAP N/A GO:0004316 ... N/A 37779101
    837467 8jfh:D (1.8) BS01 NAP N/A GO:0004316 ... N/A 37779101
    837468 8jfh:D (1.8) BS02 PN7 N/A GO:0004316 ... N/A 37779101
    837469 8jfh:E (1.8) BS01 UHC ? GO:0000035 ... Q5EDC8 37779101
    837470 8jfi:A (2.38) BS01 NAP N/A GO:0004316 ... N/A 37779101
    837471 8jfi:A (2.38) BS02 UHC N/A GO:0004316 ... N/A 37779101
    837472 8jfi:B (2.38) BS01 NAP N/A GO:0004316 ... N/A 37779101
    837473 8jfi:C (2.38) BS01 peptide N/A GO:0004316 ... N/A 37779101
    837474 8jfi:C (2.38) BS02 NAP N/A GO:0004316 ... N/A 37779101
    837475 8jfi:D (2.38) BS01 peptide N/A GO:0004316 ... N/A 37779101
    837476 8jfi:D (2.38) BS02 NAP N/A GO:0004316 ... N/A 37779101
    837477 8jfi:E (2.38) BS01 peptide N/A GO:0004316 ... N/A 37779101
    837478 8jfi:E (2.38) BS02 NAP N/A GO:0004316 ... N/A 37779101
    837479 8jfi:F (2.38) BS01 NAP N/A GO:0004316 ... N/A 37779101
    837480 8jfk:A (2.9) BS01 FAR ? GO:0004689 ... P46020 38548794
    837481 8jfk:B (2.9) BS01 FAR ? GO:0005515 ... Q93100 38548794
    837482 8jfk:B (2.9) BS02 FAR ? GO:0005515 ... Q93100 38548794
    837483 8jfk:E (2.9) BS01 FAR ? GO:0004689 ... P46020 38548794
    837484 8jfk:F (2.9) BS01 FAR ? GO:0005515 ... Q93100 38548794
    837485 8jfk:F (2.9) BS02 FAR ? GO:0005515 ... Q93100 38548794
    837486 8jfk:I (2.9) BS01 FAR ? GO:0004689 ... P46020 38548794
    837487 8jfk:J (2.9) BS01 FAR ? GO:0005515 ... Q93100 38548794
    837488 8jfk:J (2.9) BS02 FAR ? GO:0005515 ... Q93100 38548794
    837489 8jfk:M (2.9) BS01 FAR ? GO:0004689 ... P46020 38548794
    837490 8jfk:N (2.9) BS01 FAR ? GO:0005515 ... Q93100 38548794
    837491 8jfk:N (2.9) BS02 FAR ? GO:0005515 ... Q93100 38548794
    837492 8jfl:A (2.9) BS01 FAR ? GO:0004689 ... P46020 38548794
    837493 8jfl:B (2.9) BS01 FAR ? GO:0005515 ... Q93100 38548794
    837494 8jfl:B (2.9) BS02 ADP ? GO:0005515 ... Q93100 38548794
    837495 8jfl:B (2.9) BS03 FAR ? GO:0005515 ... Q93100 38548794
    837496 8jfl:E (2.9) BS01 FAR ? GO:0004689 ... P46020 38548794
    837497 8jfl:F (2.9) BS01 FAR ? GO:0005515 ... Q93100 38548794
    837498 8jfl:F (2.9) BS02 ADP ? GO:0005515 ... Q93100 38548794
    837499 8jfl:F (2.9) BS03 FAR ? GO:0005515 ... Q93100 38548794
    837500 8jfl:I (2.9) BS01 FAR ? GO:0004689 ... P46020 38548794
    837501 8jfl:J (2.9) BS01 FAR ? GO:0005515 ... Q93100 38548794
    837502 8jfl:J (2.9) BS02 FAR ? GO:0005515 ... Q93100 38548794
    837503 8jfl:J (2.9) BS03 ADP ? GO:0005515 ... Q93100 38548794
    837504 8jfl:M (2.9) BS01 FAR ? GO:0004689 ... P46020 38548794
    837505 8jfl:N (2.9) BS01 FAR ? GO:0005515 ... Q93100 38548794
    837506 8jfl:N (2.9) BS02 FAR ? GO:0005515 ... Q93100 38548794
    837507 8jfl:N (2.9) BS03 ADP ? GO:0005515 ... Q93100 38548794
    837508 8jfm:A (2.21) BS01 NAD 1.3.1.9 GO:0004318 ... A0A086RSH0 37779101
    837509 8jfm:B (2.21) BS01 NAD 1.3.1.9 GO:0004318 ... A0A086RSH0 37779101
    837510 8jfm:C (2.21) BS01 NAD 1.3.1.9 GO:0004318 ... A0A086RSH0 37779101
    837511 8jfm:D (2.21) BS01 NAD 1.3.1.9 GO:0004318 ... A0A086RSH0 37779101
    837512 8jfm:E (2.21) BS01 NAD 1.3.1.9 GO:0004318 ... A0A086RSH0 37779101
    837513 8jfm:F (2.21) BS01 NAD 1.3.1.9 GO:0004318 ... A0A086RSH0 37779101
    837514 8jfm:G (2.21) BS01 NAD 1.3.1.9 GO:0004318 ... A0A086RSH0 37779101
    837515 8jfm:H (2.21) BS01 NAD 1.3.1.9 GO:0004318 ... A0A086RSH0 37779101
    837516 8jfn:A (2.41) BS01 NAD 1.3.1.9 GO:0004318 ... A0A086RSH0 37779101
    837517 8jfn:A (2.41) BS02 PSR 1.3.1.9 GO:0004318 ... A0A086RSH0 37779101
    837518 8jfn:B (2.41) BS01 PSR ? GO:0000035 ... Q5EDC8 37779101
    837519 8jfr:A (3.1) BS01 dna N/A GO:0003677 ... N/A 38418450
    837520 8jfr:A (3.1) BS02 dna N/A GO:0003677 ... N/A 38418450
    837521 8jfr:B (3.1) BS01 dna N/A GO:0003677 ... N/A 38418450
    837522 8jfr:B (3.1) BS02 dna N/A GO:0003677 ... N/A 38418450
    837523 8jfr:C (3.1) BS01 dna N/A GO:0003677 ... N/A 38418450
    837524 8jfr:C (3.1) BS02 dna N/A GO:0003677 ... N/A 38418450
    837525 8jfr:D (3.1) BS01 dna N/A GO:0003677 ... N/A 38418450
    837526 8jfr:D (3.1) BS02 dna N/A GO:0003677 ... N/A 38418450
    837527 8jfs:A (1.0) BS01 PO4 3.6.1.7 GO:0003998 ... Q9RVU3 37302289
    837528 8jfs:B (1.0) BS01 PO4 3.6.1.7 GO:0003998 ... Q9RVU3 37302289
    837529 8jft:A (3.31) BS01 rna 3.1.-.- GO:0003676 ... J7RUA5 38418450
    837530 8jft:C (3.31) BS01 rna N/A N/A N/A 38418450
    837531 8jfu:A (3.15) BS01 dna N/A N/A N/A 38418450
    837532 8jfu:A (3.15) BS02 dna N/A N/A N/A 38418450
    837533 8jfu:B (3.15) BS01 dna N/A N/A N/A 38418450
    837534 8jfu:B (3.15) BS02 dna N/A N/A N/A 38418450
    837535 8jfu:C (3.15) BS01 dna N/A N/A N/A 38418450
    837536 8jfu:C (3.15) BS02 dna N/A N/A N/A 38418450
    837537 8jfu:D (3.15) BS01 dna N/A N/A N/A 38418450
    837538 8jfu:D (3.15) BS02 dna N/A N/A N/A 38418450
    837539 8jfv:A (3.05) BS01 I4Y ? GO:0000976 ... A0A454A0X5 37805153
    837540 8jfv:A (3.05) BS02 EPE ? GO:0000976 ... A0A454A0X5 37805153
    837541 8jfv:B (3.05) BS01 EPE ? GO:0000976 ... A0A454A0X5 37805153
    837542 8jfw:D (3.64) BS01 FE N/A GO:0004721 ... P40421 N/A
    837543 8jfw:D (3.64) BS02 ZN N/A GO:0004721 ... P40421 N/A
    837544 8jfy:A (2.79) BS01 CA N/A GO:0046872 ... C6SUZ2 N/A
    837545 8jfy:A (2.79) BS02 CA N/A GO:0046872 ... C6SUZ2 N/A
    837546 8jfy:A (2.79) BS03 CA N/A GO:0046872 ... C6SUZ2 N/A
    837547 8jfy:A (2.79) BS04 CA N/A GO:0046872 ... C6SUZ2 N/A
    837548 8jfy:B (2.79) BS01 CA N/A GO:0046872 ... C6SUZ2 N/A
    837549 8jfy:B (2.79) BS02 CA N/A GO:0046872 ... C6SUZ2 N/A
    837550 8jfy:B (2.79) BS03 CA N/A GO:0046872 ... C6SUZ2 N/A
    837551 8jfy:B (2.79) BS04 CA N/A GO:0046872 ... C6SUZ2 N/A
    837552 8jfy:C (2.79) BS01 ZN N/A GO:0004721 ... P40421 N/A
    837553 8jfy:C (2.79) BS02 FE N/A GO:0004721 ... P40421 N/A
    837554 8jfy:C (2.79) BS03 CA N/A GO:0004721 ... P40421 N/A
    837555 8jfy:C (2.79) BS04 CA N/A GO:0004721 ... P40421 N/A
    837556 8jfy:D (2.79) BS01 ZN N/A GO:0004721 ... P40421 N/A
    837557 8jfy:D (2.79) BS02 FE N/A GO:0004721 ... P40421 N/A
    837558 8jfy:D (2.79) BS03 CA N/A GO:0004721 ... P40421 N/A
    837559 8jfy:D (2.79) BS04 CA N/A GO:0004721 ... P40421 N/A
    837560 8jfz:A (3.5) BS01 CLR ? GO:0000166 ... Q4H132 37357620
    837561 8jfz:A (3.5) BS02 MG ? GO:0000166 ... Q4H132 37357620
    837562 8jfz:C (3.5) BS01 MG ? GO:0000166 ... Q4H132 37357620
    837563 8jfz:C (3.5) BS02 CLR ? GO:0000166 ... Q4H132 37357620
    837564 8jfz:E (3.5) BS01 CLR ? GO:0016020 ... Q70Q12 37357620
    837565 8jfz:G (3.5) BS01 CLR ? GO:0016020 ... Q70Q12 37357620
    837566 8jg2:A (1.64) BS01 COA 2.3.1.9 GO:0016746 ... A0A848BQU5 N/A
    837567 8jg2:B (1.64) BS01 COA 2.3.1.9 GO:0016746 ... A0A848BQU5 N/A
    837568 8jg4:A (2.3) BS01 peptide ? GO:0006355 ... Q9FH40 N/A
    837569 8jg4:B (2.3) BS01 peptide ? GO:0006355 ... Q9FH40 N/A
    837570 8jg7:A (2.85) BS01 PLP 4.1.1.- GO:0016830 ... Q9MA74 39287621
    837571 8jg7:A (2.85) BS02 ZN 4.1.1.- GO:0016830 ... Q9MA74 39287621
    837572 8jg7:C (2.85) BS01 PLP 4.1.1.- GO:0016830 ... Q9MA74 39287621
    837573 8jg7:C (2.85) BS02 ZN 4.1.1.- GO:0016830 ... Q9MA74 39287621
    837574 8jg7:D (2.85) BS01 PLP 4.1.1.- GO:0016830 ... Q9MA74 39287621
    837575 8jg7:D (2.85) BS02 ZN 4.1.1.- GO:0016830 ... Q9MA74 39287621
    837576 8jg7:E (2.85) BS01 PLP 4.1.1.- GO:0016830 ... Q9MA74 39287621
    837577 8jg7:E (2.85) BS02 ZN 4.1.1.- GO:0016830 ... Q9MA74 39287621
    837578 8jg8:A (2.90002) BS01 C74 2.7.11.1 GO:0000212 ... O14965 38248139
    837579 8jg9:A (3.82) BS01 rna 3.1.-.- GO:0003676 ... J7RUA5 38418450
    837580 8jg9:C (3.82) BS01 rna N/A N/A N/A 38418450
    837581 8jg9:C (3.82) BS02 dna N/A N/A N/A 38418450
    837582 8jg9:C (3.82) BS03 dna N/A N/A N/A 38418450
    837583 8jg9:D (3.82) BS01 rna 3.1.-.- GO:0003676 ... J7RUA5 38418450
    837584 8jg9:F (3.82) BS01 rna N/A N/A N/A 38418450
    837585 8jg9:F (3.82) BS02 dna N/A N/A N/A 38418450
    837586 8jg9:F (3.82) BS03 dna N/A N/A N/A 38418450
    837587 8jgd:A (1.60037) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37534597
    837588 8jgd:A (1.60037) BS02 DWI 3.6.5.2 GO:0003924 ... P01116 37534597
    837589 8jgf:R (2.7) BS01 peptide ? GO:0004888 ... Q96LB2 37591889
    837590 8jgg:R (3.0) BS01 peptide ? GO:0004888 ... Q96LB2 37591889
    837591 8jgj:A (3.3) BS01 ATP N/A GO:0005247 ... P51791 39107281
    837592 8jgj:A (3.3) BS02 CL N/A GO:0005247 ... P51791 39107281
    837593 8jgj:B (3.3) BS01 ATP N/A GO:0005247 ... P51791 39107281
    837594 8jgj:B (3.3) BS02 CL N/A GO:0005247 ... P51791 39107281
    837595 8jgk:A (4.04) BS01 ADP N/A GO:0005247 ... P51791 39107281
    837596 8jgk:B (4.04) BS01 ADP N/A GO:0005247 ... P51791 39107281
    837597 8jgl:A (3.14) BS01 AMP N/A GO:0005247 ... P51791 39107281
    837598 8jgl:B (3.14) BS01 AMP N/A GO:0005247 ... P51791 39107281
    837599 8jgo:A (1.9) BS01 MG ? GO:0016462 ... Q9RYW9 38682481
    837600 8jgp:A (3.02) BS01 MN ? GO:0016462 ... Q9RYW9 38682481

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).