SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    837801 8ji6:A (1.9) BS02 TRP ? GO:0046872 ... A0A861B387 37973794
    837802 8ji6:B (1.9) BS01 FE2 ? GO:0046872 ... A0A861B387 37973794
    837803 8ji6:B (1.9) BS02 TRP ? GO:0046872 ... A0A861B387 37973794
    837804 8ji7:A (1.61) BS01 FE2 ? GO:0046872 ... A0A861B387 37973794
    837805 8ji7:A (1.61) BS02 FE2 ? GO:0046872 ... A0A861B387 37973794
    837806 8ji7:A (1.61) BS03 TRP ? GO:0046872 ... A0A861B387 37973794
    837807 8ji7:B (1.61) BS01 FE2 ? GO:0046872 ... A0A861B387 37973794
    837808 8ji7:B (1.61) BS02 FE2 ? GO:0046872 ... A0A861B387 37973794
    837809 8ji7:B (1.61) BS03 TRP ? GO:0046872 ... A0A861B387 37973794
    837810 8ji8:A (2.65) BS01 CU ? GO:0004497 ... Q16G28 N/A
    837811 8ji8:A (2.65) BS02 CU ? GO:0004497 ... Q16G28 N/A
    837812 8ji8:B (2.65) BS01 CU ? GO:0004497 ... Q16G28 N/A
    837813 8ji8:B (2.65) BS02 CU ? GO:0004497 ... Q16G28 N/A
    837814 8ji8:C (2.65) BS01 CU ? GO:0004497 ... Q16G28 N/A
    837815 8ji8:C (2.65) BS02 CU ? GO:0004497 ... Q16G28 N/A
    837816 8ji8:D (2.65) BS01 CU ? GO:0004497 ... Q16G28 N/A
    837817 8ji8:D (2.65) BS02 CU ? GO:0004497 ... Q16G28 N/A
    837818 8jia:A (3.9) BS01 ATP ? GO:0000287 ... O05779 38044344
    837819 8jia:B (3.9) BS01 ATP ? GO:0000287 ... O05779 38044344
    837820 8jib:A (3.15) BS01 CU ? GO:0004497 ... Q16G28 N/A
    837821 8jib:A (3.15) BS02 CU ? GO:0004497 ... Q16G28 N/A
    837822 8jib:B (3.15) BS01 CU ? GO:0004497 ... Q16G28 N/A
    837823 8jib:B (3.15) BS02 CU ? GO:0004497 ... Q16G28 N/A
    837824 8jib:C (3.15) BS01 CU ? GO:0004497 ... Q16G28 N/A
    837825 8jib:C (3.15) BS02 CU ? GO:0004497 ... Q16G28 N/A
    837826 8jib:D (3.15) BS01 CU ? GO:0004497 ... Q16G28 N/A
    837827 8jib:D (3.15) BS02 CU ? GO:0004497 ... Q16G28 N/A
    837828 8jib:E (3.15) BS01 CU ? GO:0004497 ... Q16G28 N/A
    837829 8jib:E (3.15) BS02 CU ? GO:0004497 ... Q16G28 N/A
    837830 8jib:F (3.15) BS01 CU ? GO:0004497 ... Q16G28 N/A
    837831 8jib:F (3.15) BS02 CU ? GO:0004497 ... Q16G28 N/A
    837832 8jib:G (3.15) BS01 CU ? GO:0004497 ... Q16G28 N/A
    837833 8jib:G (3.15) BS02 CU ? GO:0004497 ... Q16G28 N/A
    837834 8jib:H (3.15) BS01 CU ? GO:0004497 ... Q16G28 N/A
    837835 8jib:H (3.15) BS02 CU ? GO:0004497 ... Q16G28 N/A
    837836 8jib:I (3.15) BS01 CU ? GO:0004497 ... Q16G28 N/A
    837837 8jib:I (3.15) BS02 CU ? GO:0004497 ... Q16G28 N/A
    837838 8jib:J (3.15) BS01 CU ? GO:0004497 ... Q16G28 N/A
    837839 8jib:J (3.15) BS02 CU ? GO:0004497 ... Q16G28 N/A
    837840 8jib:K (3.15) BS01 CU ? GO:0004497 ... Q16G28 N/A
    837841 8jib:K (3.15) BS02 CU ? GO:0004497 ... Q16G28 N/A
    837842 8jib:L (3.15) BS01 CU ? GO:0004497 ... Q16G28 N/A
    837843 8jib:L (3.15) BS02 CU ? GO:0004497 ... Q16G28 N/A
    837844 8jif:R (2.28) BS01 ZN 4.2.1.1 GO:0004089 ... Q64444 38315719
    837845 8jig:A (2.4) BS01 8JA 2.3.2.27 N/A Q96T88 N/A
    837846 8jig:B (2.4) BS01 8JA 2.3.2.27 N/A Q96T88 N/A
    837847 8jii:A (3.17) BS01 NIO ? GO:0001781 ... Q8TDS4 37597514
    837848 8jii:A (3.17) BS02 CLR ? GO:0001781 ... Q8TDS4 37597514
    837849 8jii:A (3.17) BS03 IX8 ? GO:0001781 ... Q8TDS4 37597514
    837850 8jij:A (2.5) BS01 PLP ? GO:0016830 ... A0A4S4ESS1 39287621
    837851 8jij:A (2.5) BS02 ZN ? GO:0016830 ... A0A4S4ESS1 39287621
    837852 8jij:A (2.5) BS03 ZN ? GO:0016830 ... A0A4S4ESS1 39287621
    837853 8jik:A (2.6) BS01 PLP ? GO:0016830 ... A0A4S4ESS1 39287621
    837854 8jik:A (2.6) BS02 ZN ? GO:0016830 ... A0A4S4ESS1 39287621
    837855 8jil:A (3.5) BS01 NIO ? GO:0001781 ... Q8TDS4 37597514
    837856 8jil:A (3.5) BS02 CLR ? GO:0001781 ... Q8TDS4 37597514
    837857 8jim:E (2.98) BS01 AW9 ? GO:0001781 ... Q8TDS4 37597514
    837858 8jip:R (2.85) BS01 peptide ? GO:0004888 ... P43220 37549266
    837859 8jip:R (2.85) BS02 D6M ? GO:0004888 ... P43220 37549266
    837860 8jiq:R (3.4) BS01 peptide ? GO:0004888 ... P47871 37549266
    837861 8jir:R (2.57) BS01 peptide ? GO:0004888 ... P43220 37549266
    837862 8jir:R (2.57) BS02 D6M ? GO:0004888 ... P43220 37549266
    837863 8jis:R (2.46) BS01 peptide ? GO:0004888 ... P43220 37549266
    837864 8jit:R (2.91) BS01 peptide ? GO:0004888 ... P47871 37549266
    837865 8jit:R (2.91) BS02 D6M ? GO:0004888 ... P47871 37549266
    837866 8jiu:R (2.76) BS01 peptide ? GO:0004888 ... P47871 37549266
    837867 8jiu:R (2.76) BS02 D6M ? GO:0004888 ... P47871 37549266
    837868 8jiv:CA (2.84) BS01 rna ? GO:0002181 ... W5ECL2 38458197
    837869 8jiv:CB (2.84) BS01 rna ? GO:0003723 ... Q7X744 38458197
    837870 8jiv:CC (2.84) BS01 rna N/A GO:0003735 ... N/A 38458197
    837871 8jiv:CC (2.84) BS02 rna N/A GO:0003735 ... N/A 38458197
    837872 8jiv:CD (2.84) BS01 rna ? GO:0000027 ... A0A3B6DD91 38458197
    837873 8jiv:CD (2.84) BS02 rna ? GO:0000027 ... A0A3B6DD91 38458197
    837874 8jiv:CE (2.84) BS01 rna ? GO:0003735 ... A0A3B6QGW3 38458197
    837875 8jiv:CF (2.84) BS01 rna ? GO:0000463 ... A0A3B6DM38 38458197
    837876 8jiv:CF (2.84) BS02 rna ? GO:0000463 ... A0A3B6DM38 38458197
    837877 8jiv:CG (2.84) BS01 rna ? GO:0000470 ... A0A3B6RED0 38458197
    837878 8jiv:CG (2.84) BS02 rna ? GO:0000470 ... A0A3B6RED0 38458197
    837879 8jiv:CH (2.84) BS01 rna ? GO:0002181 ... A0A077RTE5 38458197
    837880 8jiv:CI (2.84) BS01 rna ? GO:0003735 ... A0A3B6HUM3 38458197
    837881 8jiv:CI (2.84) BS02 rna ? GO:0003735 ... A0A3B6HUM3 38458197
    837882 8jiv:CJ (2.84) BS01 rna ? GO:0003723 ... A0A3B5XX39 38458197
    837883 8jiv:CJ (2.84) BS02 rna ? GO:0003723 ... A0A3B5XX39 38458197
    837884 8jiv:CL (2.84) BS01 rna ? GO:0003723 ... A0A3B6QBU0 38458197
    837885 8jiv:CL (2.84) BS02 rna ? GO:0003723 ... A0A3B6QBU0 38458197
    837886 8jiv:CM (2.84) BS01 rna ? GO:0003723 ... A0A3B6DGT8 38458197
    837887 8jiv:CN (2.84) BS01 rna ? GO:0002181 ... W5FEX7 38458197
    837888 8jiv:CN (2.84) BS02 rna ? GO:0002181 ... W5FEX7 38458197
    837889 8jiv:CO (2.84) BS01 rna ? GO:0003729 ... Q5I7L1 38458197
    837890 8jiv:CP (2.84) BS01 rna ? GO:0002181 ... W5FSM8 38458197
    837891 8jiv:CP (2.84) BS02 rna ? GO:0002181 ... W5FSM8 38458197
    837892 8jiv:CQ (2.84) BS01 rna ? GO:0003723 ... A0A3B5ZQE8 38458197
    837893 8jiv:CR (2.84) BS01 rna ? GO:0003723 ... A0A3B6C2W3 38458197
    837894 8jiv:CS (2.84) BS01 rna ? GO:0002181 ... A0A3B5Z5M6 38458197
    837895 8jiv:CS (2.84) BS02 rna ? GO:0002181 ... A0A3B5Z5M6 38458197
    837896 8jiv:CT (2.84) BS01 rna ? GO:0003735 ... F4YWL9 38458197
    837897 8jiv:CT (2.84) BS02 rna ? GO:0003735 ... F4YWL9 38458197
    837898 8jiv:CU (2.84) BS01 rna ? GO:0002181 ... W5C5N9 38458197
    837899 8jiv:CV (2.84) BS01 rna ? GO:0003735 ... Q5I7K4 38458197
    837900 8jiv:CW (2.84) BS01 rna ? GO:0002181 ... A0A3B6ELC9 38458197
    837901 8jiv:CX (2.84) BS01 rna ? GO:0003735 ... A0A1D5UQZ5 38458197
    837902 8jiv:CX (2.84) BS02 rna ? GO:0003735 ... A0A1D5UQZ5 38458197
    837903 8jiv:CY (2.84) BS01 rna ? GO:0003723 ... W5D739 38458197
    837904 8jiv:CY (2.84) BS02 rna ? GO:0003723 ... W5D739 38458197
    837905 8jiv:CZ (2.84) BS01 rna ? GO:0003735 ... A0A341XZK6 38458197
    837906 8jiv:Ca (2.84) BS01 rna ? GO:0003735 ... A0A3B6AUW8 38458197
    837907 8jiv:Cb (2.84) BS01 rna ? GO:0002181 ... A0A1D5RRD3 38458197
    837908 8jiv:Cc (2.84) BS01 rna ? GO:0003723 ... Q5I7K9 38458197
    837909 8jiv:Cd (2.84) BS01 rna ? GO:0002181 ... W5G990 38458197
    837910 8jiv:Ce (2.84) BS01 rna ? GO:0003735 ... A0A3B6SDD9 38458197
    837911 8jiv:Cf (2.84) BS01 rna N/A GO:0003735 ... N/A 38458197
    837912 8jiv:Cg (2.84) BS01 rna ? GO:0003735 ... A0A3B6RFY8 38458197
    837913 8jiv:Ch (2.84) BS01 rna ? GO:0000463 ... Q8L805 38458197
    837914 8jiv:Ch (2.84) BS02 rna ? GO:0000463 ... Q8L805 38458197
    837915 8jiv:Ci (2.84) BS01 rna ? GO:0002181 ... A0A1D5S805 38458197
    837916 8jiv:Cj (2.84) BS01 rna ? GO:0003723 ... A0A1D6BC85 38458197
    837917 8jiv:Cj (2.84) BS02 rna ? GO:0003723 ... A0A1D6BC85 38458197
    837918 8jiv:Cj (2.84) BS03 ZN ? GO:0003723 ... A0A1D6BC85 38458197
    837919 8jiv:Ck (2.84) BS01 rna ? GO:0003735 ... A0A1D5W6Q2 38458197
    837920 8jiv:Cl (2.84) BS01 rna ? GO:0003735 ... Q5I7K7 38458197
    837921 8jiv:Cl (2.84) BS02 rna ? GO:0003735 ... Q5I7K7 38458197
    837922 8jiv:Cm (2.84) BS01 rna ? GO:0003729 ... A0A1D5XNC2 38458197
    837923 8jiv:Cm (2.84) BS02 ZN ? GO:0003729 ... A0A1D5XNC2 38458197
    837924 8jiv:Co (2.84) BS01 rna ? GO:0003735 ... A0A3B6C6X2 38458197
    837925 8jiv:Co (2.84) BS02 ZN ? GO:0003735 ... A0A3B6C6X2 38458197
    837926 8jiv:Cp (2.84) BS01 rna ? GO:0003735 ... D8L9P6 38458197
    837927 8jiv:Cr (2.84) BS01 rna ? GO:0003735 ... A0A3B5Y651 38458197
    837928 8jiw:BA (2.88) BS01 rna ? GO:0000028 ... A0A3B6AV88 38458197
    837929 8jiw:BB (2.88) BS01 rna ? GO:0003735 ... A0A3B6IU74 38458197
    837930 8jiw:BC (2.88) BS01 rna ? GO:0003723 ... A0A3B6N0N5 38458197
    837931 8jiw:BD (2.88) BS01 rna ? GO:0003723 ... W5I1R7 38458197
    837932 8jiw:BE (2.88) BS01 rna ? GO:0003723 ... A0A1D5SLI4 38458197
    837933 8jiw:BF (2.88) BS01 rna ? GO:0000028 ... W5D067 38458197
    837934 8jiw:BG (2.88) BS01 rna ? GO:0003735 ... W5C8N6 38458197
    837935 8jiw:BH (2.88) BS01 rna ? GO:0003735 ... Q5I7K2 38458197
    837936 8jiw:BI (2.88) BS01 rna ? GO:0000462 ... A0A3B6C6G0 38458197
    837937 8jiw:BJ (2.88) BS01 rna ? GO:0003723 ... W5FPA7 38458197
    837938 8jiw:BK (2.88) BS01 rna ? GO:0003723 ... W5AUH7 38458197
    837939 8jiw:BL (2.88) BS01 rna ? GO:0003735 ... A0A3B6QHW3 38458197
    837940 8jiw:BN (2.88) BS01 rna ? GO:0003735 ... W5I035 38458197
    837941 8jiw:BO (2.88) BS01 rna ? GO:0000028 ... A0A3B6SS17 38458197
    837942 8jiw:BP (2.88) BS01 rna ? GO:0000028 ... A0A3B6LV48 38458197
    837943 8jiw:BQ (2.88) BS01 rna ? GO:0000462 ... A0A3B6HX49 38458197
    837944 8jiw:BR (2.88) BS01 rna ? GO:0003735 ... A0A3B5XY60 38458197
    837945 8jiw:BS (2.88) BS01 rna ? GO:0003676 ... A0A3B6TWW5 38458197
    837946 8jiw:BS (2.88) BS02 MG ? GO:0003676 ... A0A3B6TWW5 38458197
    837947 8jiw:BS (2.88) BS03 MG ? GO:0003676 ... A0A3B6TWW5 38458197
    837948 8jiw:BT (2.88) BS01 rna ? GO:0003735 ... W5FWF5 38458197
    837949 8jiw:BU (2.88) BS01 rna ? GO:0003735 ... A0A3B6MKF1 38458197
    837950 8jiw:BW (2.88) BS01 rna ? GO:0003735 ... E2F3W4 38458197
    837951 8jiw:BX (2.88) BS01 rna ? GO:0003735 ... W5FV77 38458197
    837952 8jiw:BY (2.88) BS01 rna ? GO:0003735 ... A0A3B6PK86 38458197
    837953 8jiw:BZ (2.88) BS01 rna ? GO:0005840 ... A0A3B6HY18 38458197
    837954 8jiw:Ba (2.88) BS01 rna ? GO:0003729 ... A0A3B6KQB8 38458197
    837955 8jiw:Bb (2.88) BS01 rna ? GO:0000028 ... A0A341UET3 38458197
    837956 8jiw:Bc (2.88) BS01 rna ? GO:0000028 ... W5E8X2 38458197
    837957 8jiw:Bd (2.88) BS01 rna ? GO:0002181 ... A0A1D5ZKM9 38458197
    837958 8jiw:Bd (2.88) BS02 ZN ? GO:0002181 ... A0A1D5ZKM9 38458197
    837959 8jiw:Be (2.88) BS01 rna ? GO:0003735 ... A0A3B6S9M7 38458197
    837960 8jiw:Bg (2.88) BS01 rna ? GO:0005080 ... A0A3B5Z4Q0 38458197
    837961 8jj8:F (3.2) BS01 H98 ? GO:0004930 ... P07550
    P0ABE7
    37580554
    837962 8jj9:A (2.51) BS01 peptide ? N/A Q658Y4 37903274
    837963 8jj9:B (2.51) BS01 peptide ? N/A Q658Y4 37903274
    837964 8jja:A (1.6) BS01 FE 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    837965 8jja:A (1.6) BS02 FE 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    837966 8jjb:A (2.68) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38430854
    837967 8jjb:A (2.68) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 38430854
    837968 8jjb:B (2.68) BS01 USI ? GO:0000226 ... P02554 38430854
    837969 8jjb:B (2.68) BS02 GDP ? GO:0000226 ... P02554 38430854
    837970 8jjb:C (2.68) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38430854
    837971 8jjb:C (2.68) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 38430854
    837972 8jjb:D (2.68) BS01 CA ? GO:0000226 ... P02554 38430854
    837973 8jjb:D (2.68) BS02 GTP ? GO:0000226 ... P02554 38430854
    837974 8jjb:D (2.68) BS03 USI ? GO:0000226 ... P02554 38430854
    837975 8jjb:F (2.68) BS01 ACP 6.3.2.25 GO:0000226 ... A0A8V0Z8P0 38430854
    837976 8jjc:A (2.76) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38430854
    837977 8jjc:A (2.76) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 38430854
    837978 8jjc:B (2.76) BS01 UPO ? GO:0000226 ... P02554 38430854
    837979 8jjc:B (2.76) BS02 GDP ? GO:0000226 ... P02554 38430854
    837980 8jjc:C (2.76) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38430854
    837981 8jjc:C (2.76) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 38430854
    837982 8jjc:D (2.76) BS01 GTP ? GO:0000226 ... P02554 38430854
    837983 8jjc:F (2.76) BS01 ACP 6.3.2.25 GO:0000226 ... A0A8V0Z8P0 38430854
    837984 8jje:A (3.4) BS01 ZN 3.4.17.-
    3.4.17.23
    GO:0006508 ... Q9BYF1 37647387
    837985 8jjk:A (1.7) BS01 ADP 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    837986 8jjk:A (1.7) BS02 FE 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    837987 8jjk:A (1.7) BS03 FE 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    837988 8jjk:A (1.7) BS04 MG 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    837989 8jjl:A (3.2) BS01 DZQ ? GO:0004930 ... P07550
    P0ABE7
    37580554
    837990 8jjm:A (1.8) BS01 CA ? GO:0004553 ... A0A0S2UQL4 37290279
    837991 8jjm:A (1.8) BS02 CA ? GO:0004553 ... A0A0S2UQL4 37290279
    837992 8jjm:A (1.8) BS03 CA ? GO:0004553 ... A0A0S2UQL4 37290279
    837993 8jjm:B (1.8) BS01 CA ? GO:0004553 ... A0A0S2UQL4 37290279
    837994 8jjm:B (1.8) BS02 CA ? GO:0004553 ... A0A0S2UQL4 37290279
    837995 8jjm:B (1.8) BS03 CA ? GO:0004553 ... A0A0S2UQL4 37290279
    837996 8jjn:A (1.98) BS01 UPG N/A GO:0016757 ... N/A N/A
    837997 8jjn:B (1.98) BS01 UPG N/A GO:0016757 ... N/A N/A
    837998 8jjn:C (1.98) BS01 UPG N/A GO:0016757 ... N/A N/A
    837999 8jjo:F (3.4) BS01 JTZ ? GO:0004930 ... P07550
    P0ABE7
    37580554
    838000 8jjp:A (2.9) BS01 peptide N/A GO:0004930 ... P46091 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).