SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    838201 8jjr:T (2.8) BS07 CLA N/A GO:0009765 ... A0AA36NBE3 38493166
    838202 8jjr:T (2.8) BS08 CLA N/A GO:0009765 ... A0AA36NBE3 38493166
    838203 8jjr:T (2.8) BS09 CLA N/A GO:0009765 ... A0AA36NBE3 38493166
    838204 8jjr:T (2.8) BS10 KC2 N/A GO:0009765 ... A0AA36NBE3 38493166
    838205 8jjr:T (2.8) BS11 CLA N/A GO:0009765 ... A0AA36NBE3 38493166
    838206 8jjr:T (2.8) BS12 DD6 N/A GO:0009765 ... A0AA36NBE3 38493166
    838207 8jjr:T (2.8) BS13 DD6 N/A GO:0009765 ... A0AA36NBE3 38493166
    838208 8jjr:T (2.8) BS14 UIX N/A GO:0009765 ... A0AA36NBE3 38493166
    838209 8jjr:U (2.8) BS01 CLA N/A GO:0009765 ... A0AA36JI10 38493166
    838210 8jjr:U (2.8) BS02 CLA N/A GO:0009765 ... A0AA36JI10 38493166
    838211 8jjr:U (2.8) BS03 KC2 N/A GO:0009765 ... A0AA36JI10 38493166
    838212 8jjr:U (2.8) BS04 CLA N/A GO:0009765 ... A0AA36JI10 38493166
    838213 8jjr:U (2.8) BS05 CLA N/A GO:0009765 ... A0AA36JI10 38493166
    838214 8jjr:U (2.8) BS06 DD6 N/A GO:0009765 ... A0AA36JI10 38493166
    838215 8jjr:U (2.8) BS07 PID N/A GO:0009765 ... A0AA36JI10 38493166
    838216 8jjr:U (2.8) BS08 CLA N/A GO:0009765 ... A0AA36JI10 38493166
    838217 8jjr:a (2.8) BS01 CLA N/A GO:0009579 ... N/A 38493166
    838218 8jjr:a (2.8) BS02 CLA N/A GO:0009579 ... N/A 38493166
    838219 8jjr:a (2.8) BS03 CLA N/A GO:0009579 ... N/A 38493166
    838220 8jjr:a (2.8) BS04 CLA N/A GO:0009579 ... N/A 38493166
    838221 8jjr:a (2.8) BS05 CLA N/A GO:0009579 ... N/A 38493166
    838222 8jjr:a (2.8) BS06 CLA N/A GO:0009579 ... N/A 38493166
    838223 8jjr:a (2.8) BS07 CLA N/A GO:0009579 ... N/A 38493166
    838224 8jjr:a (2.8) BS08 CLA N/A GO:0009579 ... N/A 38493166
    838225 8jjr:a (2.8) BS09 CLA N/A GO:0009579 ... N/A 38493166
    838226 8jjr:a (2.8) BS10 CLA N/A GO:0009579 ... N/A 38493166
    838227 8jjr:a (2.8) BS11 CLA N/A GO:0009579 ... N/A 38493166
    838228 8jjr:a (2.8) BS12 CLA N/A GO:0009579 ... N/A 38493166
    838229 8jjr:a (2.8) BS13 CLA N/A GO:0009579 ... N/A 38493166
    838230 8jjr:a (2.8) BS14 CLA N/A GO:0009579 ... N/A 38493166
    838231 8jjr:a (2.8) BS15 CLA N/A GO:0009579 ... N/A 38493166
    838232 8jjr:a (2.8) BS16 CLA N/A GO:0009579 ... N/A 38493166
    838233 8jjr:a (2.8) BS17 CLA N/A GO:0009579 ... N/A 38493166
    838234 8jjr:a (2.8) BS18 CLA N/A GO:0009579 ... N/A 38493166
    838235 8jjr:a (2.8) BS19 CLA N/A GO:0009579 ... N/A 38493166
    838236 8jjr:a (2.8) BS20 CLA N/A GO:0009579 ... N/A 38493166
    838237 8jjr:a (2.8) BS21 CLA N/A GO:0009579 ... N/A 38493166
    838238 8jjr:a (2.8) BS22 CLA N/A GO:0009579 ... N/A 38493166
    838239 8jjr:a (2.8) BS23 CLA N/A GO:0009579 ... N/A 38493166
    838240 8jjr:a (2.8) BS24 CLA N/A GO:0009579 ... N/A 38493166
    838241 8jjr:a (2.8) BS25 CLA N/A GO:0009579 ... N/A 38493166
    838242 8jjr:a (2.8) BS26 CLA N/A GO:0009579 ... N/A 38493166
    838243 8jjr:a (2.8) BS27 CLA N/A GO:0009579 ... N/A 38493166
    838244 8jjr:a (2.8) BS28 CLA N/A GO:0009579 ... N/A 38493166
    838245 8jjr:a (2.8) BS29 CLA N/A GO:0009579 ... N/A 38493166
    838246 8jjr:a (2.8) BS30 CLA N/A GO:0009579 ... N/A 38493166
    838247 8jjr:a (2.8) BS31 CLA N/A GO:0009579 ... N/A 38493166
    838248 8jjr:a (2.8) BS32 CLA N/A GO:0009579 ... N/A 38493166
    838249 8jjr:a (2.8) BS33 CLA N/A GO:0009579 ... N/A 38493166
    838250 8jjr:a (2.8) BS34 PQN N/A GO:0009579 ... N/A 38493166
    838251 8jjr:a (2.8) BS35 CLA N/A GO:0009579 ... N/A 38493166
    838252 8jjr:a (2.8) BS36 SF4 N/A GO:0009579 ... N/A 38493166
    838253 8jjr:a (2.8) BS37 CLA N/A GO:0009579 ... N/A 38493166
    838254 8jjr:a (2.8) BS38 CLA N/A GO:0009579 ... N/A 38493166
    838255 8jjr:a (2.8) BS39 CLA N/A GO:0009579 ... N/A 38493166
    838256 8jjr:a (2.8) BS40 CLA N/A GO:0009579 ... N/A 38493166
    838257 8jjr:a (2.8) BS41 CLA N/A GO:0009579 ... N/A 38493166
    838258 8jjr:a (2.8) BS42 CLA N/A GO:0009579 ... N/A 38493166
    838259 8jjr:a (2.8) BS43 CLA N/A GO:0009579 ... N/A 38493166
    838260 8jjr:a (2.8) BS44 CLA N/A GO:0009579 ... N/A 38493166
    838261 8jjr:a (2.8) BS45 CLA N/A GO:0009579 ... N/A 38493166
    838262 8jjr:b (2.8) BS01 CLA N/A GO:0009579 ... N/A 38493166
    838263 8jjr:b (2.8) BS02 CLA N/A GO:0009579 ... N/A 38493166
    838264 8jjr:b (2.8) BS03 CLA N/A GO:0009579 ... N/A 38493166
    838265 8jjr:b (2.8) BS04 CLA N/A GO:0009579 ... N/A 38493166
    838266 8jjr:b (2.8) BS05 CLA N/A GO:0009579 ... N/A 38493166
    838267 8jjr:b (2.8) BS06 CLA N/A GO:0009579 ... N/A 38493166
    838268 8jjr:b (2.8) BS07 CLA N/A GO:0009579 ... N/A 38493166
    838269 8jjr:b (2.8) BS08 SF4 N/A GO:0009579 ... N/A 38493166
    838270 8jjr:b (2.8) BS09 CLA N/A GO:0009579 ... N/A 38493166
    838271 8jjr:b (2.8) BS10 CLA N/A GO:0009579 ... N/A 38493166
    838272 8jjr:b (2.8) BS11 CLA N/A GO:0009579 ... N/A 38493166
    838273 8jjr:b (2.8) BS12 CLA N/A GO:0009579 ... N/A 38493166
    838274 8jjr:b (2.8) BS13 CLA N/A GO:0009579 ... N/A 38493166
    838275 8jjr:b (2.8) BS14 CLA N/A GO:0009579 ... N/A 38493166
    838276 8jjr:b (2.8) BS15 CLA N/A GO:0009579 ... N/A 38493166
    838277 8jjr:b (2.8) BS16 CLA N/A GO:0009579 ... N/A 38493166
    838278 8jjr:b (2.8) BS17 CLA N/A GO:0009579 ... N/A 38493166
    838279 8jjr:b (2.8) BS18 CLA N/A GO:0009579 ... N/A 38493166
    838280 8jjr:b (2.8) BS19 CLA N/A GO:0009579 ... N/A 38493166
    838281 8jjr:b (2.8) BS20 CLA N/A GO:0009579 ... N/A 38493166
    838282 8jjr:b (2.8) BS21 CLA N/A GO:0009579 ... N/A 38493166
    838283 8jjr:b (2.8) BS22 CLA N/A GO:0009579 ... N/A 38493166
    838284 8jjr:b (2.8) BS23 CLA N/A GO:0009579 ... N/A 38493166
    838285 8jjr:b (2.8) BS24 CLA N/A GO:0009579 ... N/A 38493166
    838286 8jjr:b (2.8) BS25 CLA N/A GO:0009579 ... N/A 38493166
    838287 8jjr:b (2.8) BS26 CLA N/A GO:0009579 ... N/A 38493166
    838288 8jjr:b (2.8) BS27 CLA N/A GO:0009579 ... N/A 38493166
    838289 8jjr:b (2.8) BS28 CLA N/A GO:0009579 ... N/A 38493166
    838290 8jjr:b (2.8) BS29 CLA N/A GO:0009579 ... N/A 38493166
    838291 8jjr:b (2.8) BS30 CLA N/A GO:0009579 ... N/A 38493166
    838292 8jjr:b (2.8) BS31 CLA N/A GO:0009579 ... N/A 38493166
    838293 8jjr:b (2.8) BS32 CLA N/A GO:0009579 ... N/A 38493166
    838294 8jjr:b (2.8) BS33 CLA N/A GO:0009579 ... N/A 38493166
    838295 8jjr:b (2.8) BS34 CLA N/A GO:0009579 ... N/A 38493166
    838296 8jjr:b (2.8) BS35 CLA N/A GO:0009579 ... N/A 38493166
    838297 8jjr:b (2.8) BS36 CLA N/A GO:0009579 ... N/A 38493166
    838298 8jjr:b (2.8) BS37 PQN N/A GO:0009579 ... N/A 38493166
    838299 8jjr:b (2.8) BS38 DD6 N/A GO:0009579 ... N/A 38493166
    838300 8jjr:b (2.8) BS39 CLA N/A GO:0009579 ... N/A 38493166
    838301 8jjr:b (2.8) BS40 CLA N/A GO:0009579 ... N/A 38493166
    838302 8jjr:c (2.8) BS01 SF4 N/A GO:0009055 ... N/A 38493166
    838303 8jjr:c (2.8) BS02 SF4 N/A GO:0009055 ... N/A 38493166
    838304 8jjr:f (2.8) BS01 CLA N/A GO:0009522 ... A0AA36N3P6 38493166
    838305 8jjr:f (2.8) BS02 CLA N/A GO:0009522 ... A0AA36N3P6 38493166
    838306 8jjr:f (2.8) BS03 CLA N/A GO:0009522 ... A0AA36N3P6 38493166
    838307 8jjr:f (2.8) BS04 CLA N/A GO:0009522 ... A0AA36N3P6 38493166
    838308 8jjr:f (2.8) BS05 CLA N/A GO:0009522 ... A0AA36N3P6 38493166
    838309 8jjr:i (2.8) BS01 CLA N/A GO:0009522 ... A0AA36J2Y9 38493166
    838310 8jjr:i (2.8) BS02 CLA N/A GO:0009522 ... A0AA36J2Y9 38493166
    838311 8jjr:i (2.8) BS03 CLA N/A GO:0009522 ... A0AA36J2Y9 38493166
    838312 8jjr:i (2.8) BS04 DD6 N/A GO:0009522 ... A0AA36J2Y9 38493166
    838313 8jjr:j (2.8) BS01 CLA N/A N/A A0AA36N211 38493166
    838314 8jjr:j (2.8) BS02 CLA N/A N/A A0AA36N211 38493166
    838315 8jjr:j (2.8) BS03 CLA N/A N/A A0AA36N211 38493166
    838316 8jjr:j (2.8) BS04 CLA N/A N/A A0AA36N211 38493166
    838317 8jjr:j (2.8) BS05 UIX N/A N/A A0AA36N211 38493166
    838318 8jjr:l (2.8) BS01 CLA N/A GO:0009522 ... A0AA36N262 38493166
    838319 8jjr:l (2.8) BS02 CLA N/A GO:0009522 ... A0AA36N262 38493166
    838320 8jjr:l (2.8) BS03 CLA N/A GO:0009522 ... A0AA36N262 38493166
    838321 8jjr:l (2.8) BS04 CLA N/A GO:0009522 ... A0AA36N262 38493166
    838322 8jjr:l (2.8) BS05 CLA N/A GO:0009522 ... A0AA36N262 38493166
    838323 8jjr:l (2.8) BS06 CLA N/A GO:0009522 ... A0AA36N262 38493166
    838324 8jjr:l (2.8) BS07 CLA N/A GO:0009522 ... A0AA36N262 38493166
    838325 8jjr:l (2.8) BS08 CLA N/A GO:0009522 ... A0AA36N262 38493166
    838326 8jjr:l (2.8) BS09 CLA N/A GO:0009522 ... A0AA36N262 38493166
    838327 8jjr:l (2.8) BS10 CLA N/A GO:0009522 ... A0AA36N262 38493166
    838328 8jjr:l (2.8) BS11 CLA N/A GO:0009522 ... A0AA36N262 38493166
    838329 8jjr:l (2.8) BS12 CLA N/A GO:0009522 ... A0AA36N262 38493166
    838330 8jjr:l (2.8) BS13 CLA N/A GO:0009522 ... A0AA36N262 38493166
    838331 8jjr:l (2.8) BS14 CLA N/A GO:0009522 ... A0AA36N262 38493166
    838332 8jjr:m (2.8) BS01 CLA N/A N/A A0AA36N6D6 38493166
    838333 8jjr:m (2.8) BS02 CLA N/A N/A A0AA36N6D6 38493166
    838334 8jjr:r (2.8) BS01 CLA N/A N/A A0AA36JF81 38493166
    838335 8jjr:r (2.8) BS02 CLA N/A N/A A0AA36JF81 38493166
    838336 8jjr:r (2.8) BS03 CLA N/A N/A A0AA36JF81 38493166
    838337 8jjr:r (2.8) BS04 DD6 N/A N/A A0AA36JF81 38493166
    838338 8jjr:r (2.8) BS05 CLA N/A N/A A0AA36JF81 38493166
    838339 8jjr:r (2.8) BS06 CLA N/A N/A A0AA36JF81 38493166
    838340 8jjr:r (2.8) BS07 DD6 N/A N/A A0AA36JF81 38493166
    838341 8jjr:r (2.8) BS08 DD6 N/A N/A A0AA36JF81 38493166
    838342 8jjs:A (1.534) BS01 peptide 3.6.5.2 GO:0000139 ... P01116 37463267
    838343 8jjs:A (1.534) BS02 GDP 3.6.5.2 GO:0000139 ... P01116 37463267
    838344 8jjt:A (1.88) BS01 UD1 N/A GO:0016757 ... N/A N/A
    838345 8jjt:B (1.88) BS01 UD1 N/A GO:0016757 ... N/A N/A
    838346 8jjt:C (1.88) BS01 UD1 N/A GO:0016757 ... N/A N/A
    838347 8jjv:A (1.23) BS01 peptide N/A N/A N/A 38105512
    838348 8jk3:B (1.5) BS01 MG 3.5.2.6 GO:0008800 ... Q3SAW3 N/A
    838349 8jk3:B (1.5) BS02 MG 3.5.2.6 GO:0008800 ... Q3SAW3 N/A
    838350 8jk5:A (1.7) BS01 FE 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    838351 8jk5:A (1.7) BS02 FE 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    838352 8jk8:A (1.95) BS01 FE 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    838353 8jk8:A (1.95) BS02 FE 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    838354 8jk8:A (1.95) BS03 UDP 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    838355 8jk9:A (1.6) BS01 FE 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    838356 8jk9:A (1.6) BS02 FE 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    838357 8jk9:A (1.6) BS03 GDP 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    838358 8jk9:A (1.6) BS04 MG 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    838359 8jk9:A (1.6) BS05 MG 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    838360 8jka:A (2.25) BS01 FE 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    838361 8jka:A (2.25) BS02 FE 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    838362 8jka:A (2.25) BS03 AMP 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    838363 8jke:C (3.67) BS01 dna 2.7.7.6 GO:0000428 ... Q9L0L0 38427710
    838364 8jke:C (3.67) BS02 dna 2.7.7.6 GO:0000428 ... Q9L0L0 38427710
    838365 8jke:D (3.67) BS01 dna 2.7.7.6 GO:0000287 ... Q8CJT1 38427710
    838366 8jke:D (3.67) BS02 dna 2.7.7.6 GO:0000287 ... Q8CJT1 38427710
    838367 8jke:D (3.67) BS03 ZN 2.7.7.6 GO:0000287 ... Q8CJT1 38427710
    838368 8jke:D (3.67) BS04 ZN 2.7.7.6 GO:0000287 ... Q8CJT1 38427710
    838369 8jke:F (3.67) BS01 dna ? GO:0001108 ... P18183 38427710
    838370 8jke:F (3.67) BS02 dna ? GO:0001108 ... P18183 38427710
    838371 8jke:H (3.67) BS01 dna ? GO:0009303 ... Q9L0Q9 38427710
    838372 8jke:H (3.67) BS02 dna ? GO:0009303 ... Q9L0Q9 38427710
    838373 8jke:I (3.67) BS01 dna ? GO:0000160 ... P25941 38427710
    838374 8jke:I (3.67) BS02 dna ? GO:0000160 ... P25941 38427710
    838375 8jke:J (3.67) BS01 dna ? GO:0000160 ... P25941 38427710
    838376 8jke:J (3.67) BS02 dna ? GO:0000160 ... P25941 38427710
    838377 8jkk:A (2.3) BS01 dna ? GO:0046872 ... A8P1J0 38324471
    838378 8jkk:A (2.3) BS02 dna ? GO:0046872 ... A8P1J0 38324471
    838379 8jkk:A (2.3) BS03 MN ? GO:0046872 ... A8P1J0 38324471
    838380 8jkk:D (2.3) BS01 dna ? GO:0046872 ... A8P1J0 38324471
    838381 8jkk:D (2.3) BS02 dna ? GO:0046872 ... A8P1J0 38324471
    838382 8jkk:D (2.3) BS03 MN ? GO:0046872 ... A8P1J0 38324471
    838383 8jkk:G (2.3) BS01 dna ? GO:0046872 ... A8P1J0 38324471
    838384 8jkk:G (2.3) BS02 dna ? GO:0046872 ... A8P1J0 38324471
    838385 8jkk:G (2.3) BS03 MN ? GO:0046872 ... A8P1J0 38324471
    838386 8jkk:J (2.3) BS01 dna ? GO:0046872 ... A8P1J0 38324471
    838387 8jkk:J (2.3) BS02 dna ? GO:0046872 ... A8P1J0 38324471
    838388 8jkk:J (2.3) BS03 MN ? GO:0046872 ... A8P1J0 38324471
    838389 8jkl:C (2.94) BS01 dna ? GO:0000976 ... F2Z3D5 37683642
    838390 8jkl:C (2.94) BS02 dna ? GO:0000976 ... F2Z3D5 37683642
    838391 8jkl:D (2.94) BS01 dna ? GO:0000976 ... F2Z3D5 37683642
    838392 8jkl:D (2.94) BS02 dna ? GO:0000976 ... F2Z3D5 37683642
    838393 8jkl:G (2.94) BS01 dna ? GO:0000976 ... F2Z3D5 37683642
    838394 8jkl:G (2.94) BS02 dna ? GO:0000976 ... F2Z3D5 37683642
    838395 8jkl:H (2.94) BS01 dna ? GO:0000976 ... F2Z3D5 37683642
    838396 8jkl:H (2.94) BS02 dna ? GO:0000976 ... F2Z3D5 37683642
    838397 8jkn:C (2.92) BS01 dna ? GO:0000976 ... F2Z3D5 37683642
    838398 8jkn:C (2.92) BS02 dna ? GO:0000976 ... F2Z3D5 37683642
    838399 8jkn:D (2.92) BS01 dna ? GO:0000976 ... F2Z3D5 37683642
    838400 8jkn:D (2.92) BS02 dna ? GO:0000976 ... F2Z3D5 37683642

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).