SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    838401 8jkn:G (2.92) BS01 dna ? GO:0000976 ... F2Z3D5 37683642
    838402 8jkn:G (2.92) BS02 dna ? GO:0000976 ... F2Z3D5 37683642
    838403 8jkn:H (2.92) BS01 dna ? GO:0000976 ... F2Z3D5 37683642
    838404 8jkn:H (2.92) BS02 dna ? GO:0000976 ... F2Z3D5 37683642
    838405 8jko:C (2.95) BS01 dna ? GO:0000976 ... F2Z3D5 37683642
    838406 8jko:C (2.95) BS02 dna ? GO:0000976 ... F2Z3D5 37683642
    838407 8jko:D (2.95) BS01 dna ? GO:0000976 ... F2Z3D5 37683642
    838408 8jko:D (2.95) BS02 dna ? GO:0000976 ... F2Z3D5 37683642
    838409 8jko:G (2.95) BS01 dna ? GO:0000976 ... F2Z3D5 37683642
    838410 8jko:G (2.95) BS02 dna ? GO:0000976 ... F2Z3D5 37683642
    838411 8jko:H (2.95) BS01 dna ? GO:0000976 ... F2Z3D5 37683642
    838412 8jko:H (2.95) BS02 dna ? GO:0000976 ... F2Z3D5 37683642
    838413 8jkp:A (2.1) BS01 TMP 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    838414 8jkp:A (2.1) BS02 FE 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    838415 8jkp:A (2.1) BS03 FE 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    838416 8jkq:D (3.09) BS01 dna ? GO:0000976 ... F2Z3D5 37683642
    838417 8jkq:D (3.09) BS02 dna ? GO:0000976 ... F2Z3D5 37683642
    838418 8jkq:F (3.09) BS01 dna ? GO:0000976 ... F2Z3D5 37683642
    838419 8jkq:F (3.09) BS02 dna ? GO:0000976 ... F2Z3D5 37683642
    838420 8jkq:G (3.09) BS01 dna ? GO:0000976 ... F2Z3D5 37683642
    838421 8jkq:G (3.09) BS02 dna ? GO:0000976 ... F2Z3D5 37683642
    838422 8jkq:H (3.09) BS01 dna ? GO:0000976 ... F2Z3D5 37683642
    838423 8jkq:H (3.09) BS02 dna ? GO:0000976 ... F2Z3D5 37683642
    838424 8jkr:A (2.0) BS01 U5P 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    838425 8jkr:A (2.0) BS02 FE 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    838426 8jkr:A (2.0) BS03 FE 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    838427 8jks:C (3.3) BS01 dna ? GO:0000976 ... F2Z3D5 37683642
    838428 8jks:C (3.3) BS02 dna ? GO:0000976 ... F2Z3D5 37683642
    838429 8jks:D (3.3) BS01 dna ? GO:0000976 ... F2Z3D5 37683642
    838430 8jks:D (3.3) BS02 dna ? GO:0000976 ... F2Z3D5 37683642
    838431 8jks:G (3.3) BS01 dna ? GO:0000976 ... F2Z3D5 37683642
    838432 8jks:G (3.3) BS02 dna ? GO:0000976 ... F2Z3D5 37683642
    838433 8jks:H (3.3) BS01 dna ? GO:0000976 ... F2Z3D5 37683642
    838434 8jks:H (3.3) BS02 dna ? GO:0000976 ... F2Z3D5 37683642
    838435 8jku:A (2.57) BS01 NAP N/A GO:0016491 ... N/A 39609402
    838436 8jku:B (2.57) BS01 NAP N/A GO:0016491 ... N/A 39609402
    838437 8jkv:A (2.87) BS01 CLR 2.3.1.78 GO:0005764 ... Q68CP4 38769387
    838438 8jkv:B (2.87) BS01 CLR 2.3.1.78 GO:0005764 ... Q68CP4 38769387
    838439 8jkz:A (3.6) BS01 NAD ? GO:0003674 ... Q74DF6 38200015
    838440 8jl0:A (3.1) BS01 dna ? GO:0003674 ... Q74DF6 38200015
    838441 8jl0:A (3.1) BS02 rna ? GO:0003674 ... Q74DF6 38200015
    838442 8jl0:A (3.1) BS03 NAD ? GO:0003674 ... Q74DF6 38200015
    838443 8jl0:B (3.1) BS01 dna ? GO:0003674 ... Q74DF5 38200015
    838444 8jl0:B (3.1) BS02 rna ? GO:0003674 ... Q74DF5 38200015
    838445 8jl1:A (2.8) BS01 ACO 2.3.1.78 GO:0005764 ... Q68CP4 38769387
    838446 8jl1:B (2.8) BS01 ACO 2.3.1.78 GO:0005764 ... Q68CP4 38769387
    838447 8jl3:A (2.59) BS01 ACO 2.3.1.78 GO:0005764 ... Q68CP4 38769387
    838448 8jl3:A (2.59) BS02 CLR 2.3.1.78 GO:0005764 ... Q68CP4 38769387
    838449 8jl3:B (2.59) BS01 ACO 2.3.1.78 GO:0005764 ... Q68CP4 38769387
    838450 8jl3:B (2.59) BS02 CLR 2.3.1.78 GO:0005764 ... Q68CP4 38769387
    838451 8jl4:A (2.68) BS01 UV6 2.3.1.78 GO:0005764 ... Q68CP4 N/A
    838452 8jl4:A (2.68) BS02 COA 2.3.1.78 GO:0005764 ... Q68CP4 N/A
    838453 8jl4:A (2.68) BS03 CLR 2.3.1.78 GO:0005764 ... Q68CP4 N/A
    838454 8jl4:B (2.68) BS01 UV6 2.3.1.78 GO:0005764 ... Q68CP4 N/A
    838455 8jl4:B (2.68) BS02 COA 2.3.1.78 GO:0005764 ... Q68CP4 N/A
    838456 8jl4:B (2.68) BS03 CLR 2.3.1.78 GO:0005764 ... Q68CP4 N/A
    838457 8jl9:A (2.65) BS01 dna ? GO:0000786 ... P68431 37718728
    838458 8jl9:A (2.65) BS02 dna ? GO:0000786 ... P68431 37718728
    838459 8jl9:B (2.65) BS01 dna ? GO:0000781 ... P62805 37718728
    838460 8jl9:B (2.65) BS02 dna ? GO:0000781 ... P62805 37718728
    838461 8jl9:C (2.65) BS01 dna ? GO:0000786 ... P04908 37718728
    838462 8jl9:C (2.65) BS02 dna ? GO:0000786 ... P04908 37718728
    838463 8jl9:D (2.65) BS01 dna ? GO:0000786 ... P06899 37718728
    838464 8jl9:D (2.65) BS02 dna ? GO:0000786 ... P06899 37718728
    838465 8jl9:E (2.65) BS01 dna ? GO:0000786 ... P68431 37718728
    838466 8jl9:E (2.65) BS02 dna ? GO:0000786 ... P68431 37718728
    838467 8jl9:F (2.65) BS01 dna ? GO:0000781 ... P62805 37718728
    838468 8jl9:F (2.65) BS02 dna ? GO:0000781 ... P62805 37718728
    838469 8jl9:G (2.65) BS01 dna ? GO:0000786 ... P04908 37718728
    838470 8jl9:G (2.65) BS02 dna ? GO:0000786 ... P04908 37718728
    838471 8jl9:H (2.65) BS01 dna ? GO:0000786 ... P06899 37718728
    838472 8jl9:H (2.65) BS02 dna ? GO:0000786 ... P06899 37718728
    838473 8jla:A (3.44) BS01 dna ? GO:0000786 ... P68431 37718728
    838474 8jla:A (3.44) BS02 dna ? GO:0000786 ... P68431 37718728
    838475 8jla:B (3.44) BS01 dna ? GO:0003677 ... P62805 37718728
    838476 8jla:B (3.44) BS02 dna ? GO:0003677 ... P62805 37718728
    838477 8jla:C (3.44) BS01 dna ? GO:0000786 ... P04908 37718728
    838478 8jla:C (3.44) BS02 dna ? GO:0000786 ... P04908 37718728
    838479 8jla:D (3.44) BS01 dna ? GO:0000786 ... P06899 37718728
    838480 8jla:E (3.44) BS01 dna ? GO:0000786 ... P68431 37718728
    838481 8jla:E (3.44) BS02 dna ? GO:0000786 ... P68431 37718728
    838482 8jla:F (3.44) BS01 dna ? GO:0003677 ... P62805 37718728
    838483 8jla:F (3.44) BS02 dna ? GO:0003677 ... P62805 37718728
    838484 8jla:G (3.44) BS01 dna ? GO:0000786 ... P04908 37718728
    838485 8jla:G (3.44) BS02 dna ? GO:0000786 ... P04908 37718728
    838486 8jla:H (3.44) BS01 dna ? GO:0000786 ... P06899 37718728
    838487 8jla:H (3.44) BS02 dna ? GO:0000786 ... P06899 37718728
    838488 8jlb:A (2.36) BS01 dna ? GO:0000786 ... Q71DI3 37718728
    838489 8jlb:A (2.36) BS02 dna ? GO:0000786 ... Q71DI3 37718728
    838490 8jlb:B (2.36) BS01 dna ? GO:0000781 ... P62805 37718728
    838491 8jlb:B (2.36) BS02 dna ? GO:0000781 ... P62805 37718728
    838492 8jlb:C (2.36) BS01 dna ? GO:0000786 ... P04908 37718728
    838493 8jlb:C (2.36) BS02 dna ? GO:0000786 ... P04908 37718728
    838494 8jlb:D (2.36) BS01 dna ? GO:0000786 ... P06899 37718728
    838495 8jlb:D (2.36) BS02 dna ? GO:0000786 ... P06899 37718728
    838496 8jlb:E (2.36) BS01 dna ? GO:0000786 ... Q71DI3 37718728
    838497 8jlb:E (2.36) BS02 dna ? GO:0000786 ... Q71DI3 37718728
    838498 8jlb:F (2.36) BS01 dna ? GO:0000781 ... P62805 37718728
    838499 8jlb:F (2.36) BS02 dna ? GO:0000781 ... P62805 37718728
    838500 8jlb:G (2.36) BS01 dna ? GO:0000786 ... P04908 37718728
    838501 8jlb:G (2.36) BS02 dna ? GO:0000786 ... P04908 37718728
    838502 8jlb:H (2.36) BS01 dna ? GO:0000786 ... P06899 37718728
    838503 8jlc:A (2.88) BS01 UKX ? GO:0005783 ... Q7L0J3 38637505
    838504 8jld:A (2.48) BS01 dna ? GO:0000786 ... Q71DI3 37718728
    838505 8jld:A (2.48) BS02 dna ? GO:0000786 ... Q71DI3 37718728
    838506 8jld:B (2.48) BS01 dna ? GO:0000781 ... P62805 37718728
    838507 8jld:B (2.48) BS02 dna ? GO:0000781 ... P62805 37718728
    838508 8jld:C (2.48) BS01 dna ? GO:0000786 ... P04908 37718728
    838509 8jld:C (2.48) BS02 dna ? GO:0000786 ... P04908 37718728
    838510 8jld:D (2.48) BS01 dna ? GO:0000786 ... P06899 37718728
    838511 8jld:D (2.48) BS02 dna ? GO:0000786 ... P06899 37718728
    838512 8jld:E (2.48) BS01 dna ? GO:0000786 ... Q71DI3 37718728
    838513 8jld:E (2.48) BS02 dna ? GO:0000786 ... Q71DI3 37718728
    838514 8jld:F (2.48) BS01 dna ? GO:0000781 ... P62805 37718728
    838515 8jld:F (2.48) BS02 dna ? GO:0000781 ... P62805 37718728
    838516 8jld:G (2.48) BS01 dna ? GO:0000786 ... P04908 37718728
    838517 8jld:G (2.48) BS02 dna ? GO:0000786 ... P04908 37718728
    838518 8jld:H (2.48) BS01 dna ? GO:0000786 ... P06899 37718728
    838519 8jld:H (2.48) BS02 dna ? GO:0000786 ... P06899 37718728
    838520 8jlf:B (3.01) BS01 FUC ? GO:0005576 ... Q45894 38637505
    838521 8jlh:A (2.9) BS01 FUC ? GO:0005783 ... Q7L0J3 38637505
    838522 8jlh:A (2.9) BS02 UKX ? GO:0005783 ... Q7L0J3 38637505
    838523 8jli:A (3.38) BS01 UKX ? GO:0005783 ... Q7L0J3 38637505
    838524 8jli:B (3.38) BS01 UKX ? GO:0005783 ... Q7L0J3 38637505
    838525 8jlj:R (3.1) BS01 UJF ? GO:0001594 ... P0ABE7
    Q923Y8
    37935376
    838526 8jlk:R (3.22) BS01 UJL ? GO:0001594 ... P0ABE7
    Q923Y8
    37935376
    838527 8jln:R (3.24) BS01 UJF ? GO:0001594 ... P0ABE7
    Q96RJ0
    37935376
    838528 8jlo:R (3.52) BS01 UJL ? GO:0001594 ... P0ABE7
    Q96RJ0
    37935376
    838529 8jlp:R (3.23) BS01 UJU ? GO:0001594 ... P0ABE7
    Q96RJ0
    37935376
    838530 8jlq:R (2.84) BS01 G3C ? GO:0001594 ... P0ABE7
    Q96RJ0
    37935376
    838531 8jlr:R (3.0) BS01 VRK ? GO:0001594 ... P0ABE7
    Q96RJ0
    37935376
    838532 8jly:A (1.29) BS01 peptide N/A N/A N/A 38105512
    838533 8jlz:R (3.09) BS01 UQL ? GO:0004930 ... P50406 37327704
    838534 8jm0:A (1.79) BS01 FQ3 N/A GO:0016491 ... Q7XJE8 N/A
    838535 8jm0:A (1.79) BS02 FAD N/A GO:0016491 ... Q7XJE8 N/A
    838536 8jm1:A (2.31) BS01 FQ3 N/A GO:0016491 ... Q7XJE8 N/A
    838537 8jm1:A (2.31) BS02 FAD N/A GO:0016491 ... Q7XJE8 N/A
    838538 8jm2:A (1.9) BS01 FQ3 N/A GO:0016491 ... Q7XJE8 N/A
    838539 8jm2:A (1.9) BS02 FAD N/A GO:0016491 ... Q7XJE8 N/A
    838540 8jm3:A (1.9) BS01 FQ6 N/A GO:0016491 ... Q7XJE8 N/A
    838541 8jm3:A (1.9) BS02 FAD N/A GO:0016491 ... Q7XJE8 N/A
    838542 8jm4:A (1.6) BS01 FQ9 N/A GO:0016491 ... Q7XJE8 N/A
    838543 8jm4:A (1.6) BS02 FAD N/A GO:0016491 ... Q7XJE8 N/A
    838544 8jm5:B (1.9) BS01 FAD N/A GO:0016491 ... Q7XJE8 N/A
    838545 8jm6:A (1.91) BS01 FQ3 N/A GO:0016491 ... Q7XJE8 N/A
    838546 8jm6:A (1.91) BS02 FAD N/A GO:0016491 ... Q7XJE8 N/A
    838547 8jm7:A (1.8) BS01 FQ3 N/A GO:0016491 ... Q7XJE8 N/A
    838548 8jm7:A (1.8) BS02 FAD N/A GO:0016491 ... Q7XJE8 N/A
    838549 8jm8:A (1.7) BS01 E2Y N/A GO:0016491 ... Q7XJE8 N/A
    838550 8jm8:A (1.7) BS02 FAD N/A GO:0016491 ... Q7XJE8 N/A
    838551 8jma:A (2.5) BS01 FRU ? GO:0001582 ... Q9V4K2 38305684
    838552 8jma:B (2.5) BS01 FRU ? GO:0001582 ... Q9V4K2 38305684
    838553 8jma:C (2.5) BS01 FRU ? GO:0001582 ... Q9V4K2 38305684
    838554 8jma:D (2.5) BS01 FRU ? GO:0001582 ... Q9V4K2 38305684
    838555 8jmh:A (2.5) BS01 GLC ? GO:0001582 ... P83293 38305684
    838556 8jmh:A (2.5) BS02 FRU ? GO:0001582 ... P83293 38305684
    838557 8jmh:B (2.5) BS01 GLC ? GO:0001582 ... P83293 38305684
    838558 8jmh:B (2.5) BS02 FRU ? GO:0001582 ... P83293 38305684
    838559 8jmh:C (2.5) BS01 GLC ? GO:0001582 ... P83293 38305684
    838560 8jmh:C (2.5) BS02 FRU ? GO:0001582 ... P83293 38305684
    838561 8jmh:D (2.5) BS01 GLC ? GO:0001582 ... P83293 38305684
    838562 8jmh:D (2.5) BS02 FRU ? GO:0001582 ... P83293 38305684
    838563 8jmi:A (2.6) BS01 BGC ? GO:0001582 ... P83293 38305684
    838564 8jmi:A (2.6) BS02 GLC ? GO:0001582 ... P83293 38305684
    838565 8jmi:B (2.6) BS01 BGC ? GO:0001582 ... P83293 38305684
    838566 8jmi:B (2.6) BS02 GLC ? GO:0001582 ... P83293 38305684
    838567 8jmi:C (2.6) BS01 BGC ? GO:0001582 ... P83293 38305684
    838568 8jmi:C (2.6) BS02 GLC ? GO:0001582 ... P83293 38305684
    838569 8jmi:D (2.6) BS01 BGC ? GO:0001582 ... P83293 38305684
    838570 8jmi:D (2.6) BS02 GLC ? GO:0001582 ... P83293 38305684
    838571 8jmj:A (2.57) BS01 dna ? GO:0005524 ... O25759 38842933
    838572 8jmj:A (2.57) BS02 dna ? GO:0005524 ... O25759 38842933
    838573 8jmj:A (2.57) BS03 peptide ? GO:0005524 ... O25759 38842933
    838574 8jmj:A (2.57) BS04 ATP ? GO:0005524 ... O25759 38842933
    838575 8jmj:A (2.57) BS05 ATP ? GO:0005524 ... O25759 38842933
    838576 8jmj:B (2.57) BS01 dna ? GO:0005524 ... O25759 38842933
    838577 8jmj:B (2.57) BS02 dna ? GO:0005524 ... O25759 38842933
    838578 8jmj:B (2.57) BS03 peptide ? GO:0005524 ... O25759 38842933
    838579 8jmj:B (2.57) BS04 ATP ? GO:0005524 ... O25759 38842933
    838580 8jmj:B (2.57) BS05 ATP ? GO:0005524 ... O25759 38842933
    838581 8jmj:C (2.57) BS01 dna ? GO:0005524 ... O25759 38842933
    838582 8jmj:C (2.57) BS02 dna ? GO:0005524 ... O25759 38842933
    838583 8jmj:C (2.57) BS03 peptide ? GO:0005524 ... O25759 38842933
    838584 8jmj:C (2.57) BS04 ATP ? GO:0005524 ... O25759 38842933
    838585 8jmj:C (2.57) BS05 ATP ? GO:0005524 ... O25759 38842933
    838586 8jmj:D (2.57) BS01 dna ? GO:0005524 ... O25759 38842933
    838587 8jmj:D (2.57) BS02 peptide ? GO:0005524 ... O25759 38842933
    838588 8jmj:D (2.57) BS03 ATP ? GO:0005524 ... O25759 38842933
    838589 8jmj:D (2.57) BS04 ATP ? GO:0005524 ... O25759 38842933
    838590 8jmj:D (2.57) BS05 MG ? GO:0005524 ... O25759 38842933
    838591 8jmk:A (2.7) BS01 dna ? GO:0005524 ... O25759 38842933
    838592 8jmk:A (2.7) BS02 dna ? GO:0005524 ... O25759 38842933
    838593 8jmk:A (2.7) BS03 ATP ? GO:0005524 ... O25759 38842933
    838594 8jmk:A (2.7) BS04 ATP ? GO:0005524 ... O25759 38842933
    838595 8jmk:B (2.7) BS01 dna ? GO:0005524 ... O25759 38842933
    838596 8jmk:B (2.7) BS02 ATP ? GO:0005524 ... O25759 38842933
    838597 8jmk:B (2.7) BS03 ATP ? GO:0005524 ... O25759 38842933
    838598 8jmk:C (2.7) BS01 dna ? GO:0005524 ... O25759 38842933
    838599 8jmk:C (2.7) BS02 dna ? GO:0005524 ... O25759 38842933
    838600 8jmk:C (2.7) BS03 ATP ? GO:0005524 ... O25759 38842933

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).