SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    838601 8jmk:C (2.7) BS04 ATP ? GO:0005524 ... O25759 38842933
    838602 8jmk:D (2.7) BS01 dna ? GO:0005524 ... O25759 38842933
    838603 8jmk:D (2.7) BS02 ATP ? GO:0005524 ... O25759 38842933
    838604 8jmk:D (2.7) BS03 ATP ? GO:0005524 ... O25759 38842933
    838605 8jml:A (2.0) BS01 ATP ? GO:0005524 ... O25759 38842933
    838606 8jml:A (2.0) BS02 ATP ? GO:0005524 ... O25759 38842933
    838607 8jml:B (2.0) BS01 ATP ? GO:0005524 ... O25759 38842933
    838608 8jml:B (2.0) BS02 ATP ? GO:0005524 ... O25759 38842933
    838609 8jmn:A (2.26) BS01 MG 7.2.2.19 GO:0000166 ... P19156 37726448
    838610 8jmn:A (2.26) BS02 UOU 7.2.2.19 GO:0000166 ... P19156 37726448
    838611 8jmn:B (2.26) BS01 CLR ? GO:0001671 ... P18434 37726448
    838612 8jmo:A (1.95) BS01 CA 3.1.1.101
    3.1.1.74
    GO:0005576 ... G9BY57 37979420
    838613 8jmo:A (1.95) BS02 E7J 3.1.1.101
    3.1.1.74
    GO:0005576 ... G9BY57 37979420
    838614 8jmo:B (1.95) BS01 E7J 3.1.1.101
    3.1.1.74
    GO:0005576 ... G9BY57 37979420
    838615 8jmp:A (1.9) BS01 CA 3.1.1.101
    3.1.1.74
    GO:0005576 ... G9BY57 37979420
    838616 8jmp:A (1.9) BS02 EMX 3.1.1.101
    3.1.1.74
    GO:0005576 ... G9BY57 37979420
    838617 8jmr:A (2.2) BS01 UR0 ? GO:0030246 ... A9CQD3 37729620
    838618 8jmr:B (2.2) BS01 UR0 ? GO:0030246 ... A9CQD5 37729620
    838619 8jmx:A (2.9502) BS01 E47 2.7.11.1 GO:0000212 ... O14965 37594149
    838620 8jmz:A (1.988) BS01 UKI 2.7.10.1 GO:0004672 ... P11362 38172256
    838621 8jmz:B (1.988) BS01 UKI 2.7.10.1 GO:0004672 ... P11362 38172256
    838622 8jn4:H (3.5) BS01 MAN N/A N/A N/A N/A
    838623 8jn8:A (1.902) BS01 JA6 2.7.10.2 GO:0000122 ... P12931 N/A
    838624 8jn9:A (2.724) BS01 UJ0 2.7.10.2 GO:0000122 ... P12931 N/A
    838625 8jnb:B (1.62) BS01 USX N/A GO:0007165 ... P04049
    P15056
    N/A
    838626 8jnc:A (2.0) BS01 HEM ? GO:0004497 ... A0A0B4ZV78 37917570
    838627 8jnc:A (2.0) BS02 E5I ? GO:0004497 ... A0A0B4ZV78 37917570
    838628 8jnc:B (2.0) BS01 HEM ? GO:0004497 ... A0A0B4ZV78 37917570
    838629 8jnc:B (2.0) BS02 E5I ? GO:0004497 ... A0A0B4ZV78 37917570
    838630 8jnd:A (3.66) BS01 dna ? GO:0000786 ... P68431 38509361
    838631 8jnd:A (3.66) BS02 dna ? GO:0000786 ... P68431 38509361
    838632 8jnd:B (3.66) BS01 dna ? GO:0000781 ... P62805 38509361
    838633 8jnd:B (3.66) BS02 dna ? GO:0000781 ... P62805 38509361
    838634 8jnd:C (3.66) BS01 dna ? GO:0000786 ... P04908 38509361
    838635 8jnd:C (3.66) BS02 dna ? GO:0000786 ... P04908 38509361
    838636 8jnd:D (3.66) BS01 dna ? GO:0000786 ... P06899 38509361
    838637 8jnd:D (3.66) BS02 dna ? GO:0000786 ... P06899 38509361
    838638 8jnd:E (3.66) BS01 dna ? GO:0000786 ... P68431 38509361
    838639 8jnd:E (3.66) BS02 dna ? GO:0000786 ... P68431 38509361
    838640 8jnd:F (3.66) BS01 dna ? GO:0000781 ... P62805 38509361
    838641 8jnd:F (3.66) BS02 dna ? GO:0000781 ... P62805 38509361
    838642 8jnd:G (3.66) BS01 dna ? GO:0000786 ... P04908 38509361
    838643 8jnd:G (3.66) BS02 dna ? GO:0000786 ... P04908 38509361
    838644 8jnd:H (3.66) BS01 dna ? GO:0000786 ... P06899 38509361
    838645 8jnd:H (3.66) BS02 dna ? GO:0000786 ... P06899 38509361
    838646 8jne:A (4.68) BS01 dna ? GO:0000786 ... P68431 38509361
    838647 8jne:A (4.68) BS02 dna ? GO:0000786 ... P68431 38509361
    838648 8jne:B (4.68) BS01 dna ? GO:0000781 ... P62805 38509361
    838649 8jne:B (4.68) BS02 dna ? GO:0000781 ... P62805 38509361
    838650 8jne:C (4.68) BS01 dna ? GO:0000786 ... P04908 38509361
    838651 8jne:C (4.68) BS02 dna ? GO:0000786 ... P04908 38509361
    838652 8jne:D (4.68) BS01 dna ? GO:0000786 ... P06899 38509361
    838653 8jne:D (4.68) BS02 dna ? GO:0000786 ... P06899 38509361
    838654 8jne:E (4.68) BS01 dna ? GO:0000786 ... P68431 38509361
    838655 8jne:E (4.68) BS02 dna ? GO:0000786 ... P68431 38509361
    838656 8jne:F (4.68) BS01 dna ? GO:0000781 ... P62805 38509361
    838657 8jne:F (4.68) BS02 dna ? GO:0000781 ... P62805 38509361
    838658 8jne:G (4.68) BS01 dna ? GO:0000786 ... P04908 38509361
    838659 8jne:G (4.68) BS02 dna ? GO:0000786 ... P04908 38509361
    838660 8jne:H (4.68) BS01 dna ? GO:0000786 ... P06899 38509361
    838661 8jne:H (4.68) BS02 dna ? GO:0000786 ... P06899 38509361
    838662 8jnf:A (6.91) BS01 dna ? GO:0000786 ... P68431 38509361
    838663 8jnf:A (6.91) BS02 dna ? GO:0000786 ... P68431 38509361
    838664 8jnf:B (6.91) BS01 dna ? GO:0000781 ... P62805 38509361
    838665 8jnf:B (6.91) BS02 dna ? GO:0000781 ... P62805 38509361
    838666 8jnf:E (6.91) BS01 dna ? GO:0000786 ... P68431 38509361
    838667 8jnf:E (6.91) BS02 dna ? GO:0000786 ... P68431 38509361
    838668 8jnf:F (6.91) BS01 dna ? GO:0000781 ... P62805 38509361
    838669 8jnf:F (6.91) BS02 dna ? GO:0000781 ... P62805 38509361
    838670 8jnf:G (6.91) BS01 dna ? GO:0000786 ... P04908 38509361
    838671 8jnf:G (6.91) BS02 dna ? GO:0000786 ... P04908 38509361
    838672 8jnf:H (6.91) BS01 dna ? GO:0000786 ... P06899 38509361
    838673 8jnf:H (6.91) BS02 dna ? GO:0000786 ... P06899 38509361
    838674 8jnf:L (6.91) BS01 dna ? GO:0000150 ... Q06609 38509361
    838675 8jnf:M (6.91) BS01 dna ? GO:0000150 ... Q06609 38509361
    838676 8jnf:N (6.91) BS01 dna ? GO:0000150 ... Q06609 38509361
    838677 8jnf:O (6.91) BS01 dna ? GO:0000150 ... Q06609 38509361
    838678 8jng:A (3.2) BS01 FES ? GO:0004497 ... A0A5J4YIW4 N/A
    838679 8jni:A (3.2) BS01 PT5 ? GO:0005452 ... P04920 38272905
    838680 8jni:A (3.2) BS02 PT5 ? GO:0005452 ... P04920 38272905
    838681 8jni:B (3.2) BS01 PT5 ? GO:0005452 ... P04920 38272905
    838682 8jni:B (3.2) BS02 PT5 ? GO:0005452 ... P04920 38272905
    838683 8jnk:A (2.69) BS01 dna 1.14.11.33
    1.14.11.54
    GO:0006281 ... Q96Q83 38158383
    838684 8jnk:A (2.69) BS02 MN 1.14.11.33
    1.14.11.54
    GO:0006281 ... Q96Q83 38158383
    838685 8jnk:C (2.69) BS01 dna 1.14.11.33
    1.14.11.54
    GO:0006281 ... Q96Q83 38158383
    838686 8jnk:C (2.69) BS02 MN 1.14.11.33
    1.14.11.54
    GO:0006281 ... Q96Q83 38158383
    838687 8jnk:E (2.69) BS01 dna 1.14.11.33
    1.14.11.54
    GO:0006281 ... Q96Q83 38158383
    838688 8jnk:E (2.69) BS02 MN 1.14.11.33
    1.14.11.54
    GO:0006281 ... Q96Q83 38158383
    838689 8jnk:G (2.69) BS01 dna 1.14.11.33
    1.14.11.54
    GO:0006281 ... Q96Q83 38158383
    838690 8jnk:G (2.69) BS02 MN 1.14.11.33
    1.14.11.54
    GO:0006281 ... Q96Q83 38158383
    838691 8jno:A (2.0) BS01 HEM ? GO:0004497 ... A0A0B4ZV78 37917570
    838692 8jno:A (2.0) BS02 E8T ? GO:0004497 ... A0A0B4ZV78 37917570
    838693 8jno:B (2.0) BS01 HEM ? GO:0004497 ... A0A0B4ZV78 37917570
    838694 8jno:B (2.0) BS02 E8T ? GO:0004497 ... A0A0B4ZV78 37917570
    838695 8jnp:A (2.0) BS01 EIA N/A GO:0004497 ... N/A 37917570
    838696 8jnp:A (2.0) BS02 HEM N/A GO:0004497 ... N/A 37917570
    838697 8jnq:A (2.0) BS01 EIU N/A GO:0004497 ... N/A 37917570
    838698 8jnq:A (2.0) BS02 HEM N/A GO:0004497 ... N/A 37917570
    838699 8jnr:A (3.66) BS01 dna 1.14.11.33
    1.14.11.54
    GO:0006281 ... Q96Q83 38158383
    838700 8jnr:A (3.66) BS02 MN 1.14.11.33
    1.14.11.54
    GO:0006281 ... Q96Q83 38158383
    838701 8jnr:C (3.66) BS01 MN 1.14.11.33
    1.14.11.54
    GO:0006281 ... Q96Q83 38158383
    838702 8jnr:D (3.66) BS01 MN 1.14.11.33
    1.14.11.54
    GO:0006281 ... Q96Q83 38158383
    838703 8jnr:D (3.66) BS02 ME6 1.14.11.33
    1.14.11.54
    GO:0006281 ... Q96Q83 38158383
    838704 8jnr:E (3.66) BS01 dna 1.14.11.33
    1.14.11.54
    GO:0006281 ... Q96Q83 38158383
    838705 8jnr:E (3.66) BS02 MN 1.14.11.33
    1.14.11.54
    GO:0006281 ... Q96Q83 38158383
    838706 8jns:A (4.2) BS01 ATP ? GO:0000287 ... P30429 37402593
    838707 8jns:B (4.2) BS01 ATP ? GO:0000287 ... P30429 37402593
    838708 8jns:C (4.2) BS01 ATP ? GO:0000287 ... P30429 37402593
    838709 8jns:D (4.2) BS01 ATP ? GO:0000287 ... P30429 37402593
    838710 8jns:E (4.2) BS01 ATP ? GO:0000287 ... P30429 37402593
    838711 8jns:F (4.2) BS01 ATP ? GO:0000287 ... P30429 37402593
    838712 8jnv:A () BS01 MN 1.1.1.267 N/A N/A N/A
    838713 8jnv:A () BS02 UW0 1.1.1.267 N/A N/A N/A
    838714 8jnv:B () BS01 MN 1.1.1.267 N/A N/A N/A
    838715 8jnv:B () BS02 UW0 1.1.1.267 N/A N/A N/A
    838716 8jnv:B () BS03 CA 1.1.1.267 N/A N/A N/A
    838717 8jnv:B () BS04 CA 1.1.1.267 N/A N/A N/A
    838718 8jnw:A () BS01 NDP 1.1.1.267 N/A N/A N/A
    838719 8jnw:A () BS02 MN 1.1.1.267 N/A N/A N/A
    838720 8jnw:A () BS03 UW0 1.1.1.267 N/A N/A N/A
    838721 8jnw:B () BS01 NDP 1.1.1.267 N/A N/A N/A
    838722 8jnw:B () BS02 MN 1.1.1.267 N/A N/A N/A
    838723 8jnw:B () BS03 UW0 1.1.1.267 N/A N/A N/A
    838724 8jnw:B () BS04 CA 1.1.1.267 N/A N/A N/A
    838725 8jnw:B () BS05 CA 1.1.1.267 N/A N/A N/A
    838726 8jny:A (3.2) BS01 ERV 2.4.2.-
    2.4.2.30
    GO:0003950 ... Q9UGN5 N/A
    838727 8jny:B (3.2) BS01 ERV 2.4.2.-
    2.4.2.30
    GO:0003950 ... Q9UGN5 N/A
    838728 8jnz:A (2.84) BS01 ERV 2.4.2.-
    2.4.2.30
    GO:0003950 ... P09874 N/A
    838729 8jnz:B (2.84) BS01 ERV 2.4.2.-
    2.4.2.30
    GO:0003950 ... P09874 N/A
    838730 8jo0:A (3.6) BS01 ATP ? GO:0000287 ... P30429 37402593
    838731 8jo0:B (3.6) BS01 ATP ? GO:0000287 ... P30429 37402593
    838732 8jo0:C (3.6) BS01 ATP ? GO:0000287 ... P30429 37402593
    838733 8jo0:D (3.6) BS01 ATP ? GO:0000287 ... P30429 37402593
    838734 8jo0:E (3.6) BS01 ATP ? GO:0000287 ... P30429 37402593
    838735 8jo0:F (3.6) BS01 ATP ? GO:0000287 ... P30429 37402593
    838736 8jo0:G (3.6) BS01 ATP ? GO:0000287 ... P30429 37402593
    838737 8jo2:C (2.74) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 37665001
    838738 8jo2:C (2.74) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 37665001
    838739 8jo2:D (2.74) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 37665001
    838740 8jo2:D (2.74) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 37665001
    838741 8jo2:F (2.74) BS01 dna ? GO:0000345 ... P00579 37665001
    838742 8jo2:F (2.74) BS02 dna ? GO:0000345 ... P00579 37665001
    838743 8jo2:H (2.74) BS01 dna ? GO:0000156 ... A0A0R4I965 37665001
    838744 8jo2:H (2.74) BS02 dna ? GO:0000156 ... A0A0R4I965 37665001
    838745 8jo2:I (2.74) BS01 dna ? GO:0000156 ... A0A0R4I965 37665001
    838746 8jo2:I (2.74) BS02 dna ? GO:0000156 ... A0A0R4I965 37665001
    838747 8jo3:A (2.66) BS01 AMP ? N/A A0A2H5FI52 38776962
    838748 8jo3:B (2.66) BS01 ATP 3.6.4.- GO:0000287 ... P68135 38776962
    838749 8jo4:A (3.04) BS01 ATP ? N/A A0A2H5FI52 38776962
    838750 8jo4:A (3.04) BS02 MG ? N/A A0A2H5FI52 38776962
    838751 8jo4:B (3.04) BS01 ATP 3.6.4.- GO:0000287 ... P68135 38776962
    838752 8joj:A (2.819) BS01 FAD 1.3.99.4 GO:0000166 ... Q9RA02 N/A
    838753 8joj:A (2.819) BS02 UU0 1.3.99.4 GO:0000166 ... Q9RA02 N/A
    838754 8jol:A (3.0) BS01 ATP ? GO:0000287 ... P30429 37402593
    838755 8jol:B (3.0) BS01 MG ? GO:0000287 ... P30429 37402593
    838756 8jol:B (3.0) BS02 ATP ? GO:0000287 ... P30429 37402593
    838757 8jon:A (2.51) BS01 ATP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 N/A
    838758 8jon:A (2.51) BS02 MG 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 N/A
    838759 8jon:A (2.51) BS03 ADP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 N/A
    838760 8jon:A (2.51) BS04 ATP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 N/A
    838761 8jon:A (2.51) BS05 ADP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 N/A
    838762 8jon:B (2.51) BS01 ATP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 N/A
    838763 8jon:B (2.51) BS02 ADP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 N/A
    838764 8jon:B (2.51) BS03 ATP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 N/A
    838765 8jon:B (2.51) BS04 MG 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 N/A
    838766 8jon:B (2.51) BS05 ADP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 N/A
    838767 8jon:C (2.51) BS01 ATP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 N/A
    838768 8jon:C (2.51) BS02 ADP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 N/A
    838769 8jon:C (2.51) BS03 ATP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 N/A
    838770 8jon:C (2.51) BS04 MG 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 N/A
    838771 8jon:C (2.51) BS05 ADP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 N/A
    838772 8jon:D (2.51) BS01 ATP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 N/A
    838773 8jon:D (2.51) BS02 ADP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 N/A
    838774 8jon:D (2.51) BS03 ATP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 N/A
    838775 8jon:D (2.51) BS04 MG 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 N/A
    838776 8jon:D (2.51) BS05 ADP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 N/A
    838777 8jon:E (2.51) BS01 ATP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 N/A
    838778 8jon:E (2.51) BS02 ADP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 N/A
    838779 8jon:E (2.51) BS03 ATP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 N/A
    838780 8jon:E (2.51) BS04 MG 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 N/A
    838781 8jon:E (2.51) BS05 ADP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 N/A
    838782 8jon:F (2.51) BS01 ATP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 N/A
    838783 8jon:F (2.51) BS02 ADP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 N/A
    838784 8jon:F (2.51) BS03 ATP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 N/A
    838785 8jon:F (2.51) BS04 MG 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 N/A
    838786 8jon:F (2.51) BS05 ADP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 N/A
    838787 8joo:A (2.25) BS01 HEM ? GO:0004497 ... A0A0B4ZV78 37917570
    838788 8joo:A (2.25) BS02 EIA ? GO:0004497 ... A0A0B4ZV78 37917570
    838789 8joo:B (2.25) BS01 HEM ? GO:0004497 ... A0A0B4ZV78 37917570
    838790 8joo:B (2.25) BS02 EIA ? GO:0004497 ... A0A0B4ZV78 37917570
    838791 8jop:A (2.7) BS01 UWO 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 37437852
    838792 8joq:A (1.796) BS01 peptide 2.7.11.21 N/A P53350 37684534
    838793 8jot:A (1.69) BS01 UKI 2.7.10.1 GO:0004672 ... P07333 38172256
    838794 8jow:A (1.4) BS01 peptide N/A N/A N/A 39542251
    838795 8jow:C (1.4) BS01 peptide N/A N/A N/A 39542251
    838796 8joy:A (2.61) BS01 peptide 2.7.11.21 N/A P53350 37684534
    838797 8joz:A (2.22) BS01 rna 2.1.1.- GO:0002098 ... P36566 37587716
    838798 8joz:A (2.22) BS02 SFG 2.1.1.- GO:0002098 ... P36566 37587716
    838799 8jp0:A (3.5) BS01 EKY ? GO:0005432 ... P32418 38177313
    838800 8jp1:A (2.0) BS01 NAP 1.1.1.-
    1.1.1.188
    1.1.1.210
    1.1.1.239
    1.1.1.357
    1.1.1.53
    1.1.1.62
    1.1.1.64
    GO:0001523 ... P42330 37666442

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
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