SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    838801 8jp1:A (2.0) BS02 DFV 1.1.1.-
    1.1.1.188
    1.1.1.210
    1.1.1.239
    1.1.1.357
    1.1.1.53
    1.1.1.62
    1.1.1.64
    GO:0001523 ... P42330 37666442
    838802 8jp1:B (2.0) BS01 NAP 1.1.1.-
    1.1.1.188
    1.1.1.210
    1.1.1.239
    1.1.1.357
    1.1.1.53
    1.1.1.62
    1.1.1.64
    GO:0001523 ... P42330 37666442
    838803 8jp1:B (2.0) BS02 DFV 1.1.1.-
    1.1.1.188
    1.1.1.210
    1.1.1.239
    1.1.1.357
    1.1.1.53
    1.1.1.62
    1.1.1.64
    GO:0001523 ... P42330 37666442
    838804 8jp2:A (1.8) BS01 NAP 1.1.1.-
    1.1.1.112
    1.1.1.149
    1.1.1.209
    1.1.1.210
    1.1.1.357
    1.1.1.51
    1.1.1.53
    1.1.1.62
    1.3.1.20
    GO:0001523 ... Q04828 37666442
    838805 8jp2:A (1.8) BS02 DFV 1.1.1.-
    1.1.1.112
    1.1.1.149
    1.1.1.209
    1.1.1.210
    1.1.1.357
    1.1.1.51
    1.1.1.53
    1.1.1.62
    1.3.1.20
    GO:0001523 ... Q04828 37666442
    838806 8jp3:A (2.73) BS01 A86 ? GO:0009416 ... B8BS67 39030906
    838807 8jp3:A (2.73) BS02 A86 ? GO:0009416 ... B8BS67 39030906
    838808 8jp3:A (2.73) BS03 A86 ? GO:0009416 ... B8BS67 39030906
    838809 8jp3:A (2.73) BS04 A86 ? GO:0009416 ... B8BS67 39030906
    838810 8jp3:A (2.73) BS05 A86 ? GO:0009416 ... B8BS67 39030906
    838811 8jp3:A (2.73) BS06 A86 ? GO:0009416 ... B8BS67 39030906
    838812 8jp3:A (2.73) BS07 A86 ? GO:0009416 ... B8BS67 39030906
    838813 8jp3:A (2.73) BS08 CLA ? GO:0009416 ... B8BS67 39030906
    838814 8jp3:A (2.73) BS09 CLA ? GO:0009416 ... B8BS67 39030906
    838815 8jp3:A (2.73) BS10 KC2 ? GO:0009416 ... B8BS67 39030906
    838816 8jp3:A (2.73) BS11 CLA ? GO:0009416 ... B8BS67 39030906
    838817 8jp3:A (2.73) BS12 KC2 ? GO:0009416 ... B8BS67 39030906
    838818 8jp3:A (2.73) BS13 CLA ? GO:0009416 ... B8BS67 39030906
    838819 8jp3:A (2.73) BS14 CLA ? GO:0009416 ... B8BS67 39030906
    838820 8jp3:A (2.73) BS15 KC1 ? GO:0009416 ... B8BS67 39030906
    838821 8jp3:A (2.73) BS16 CLA ? GO:0009416 ... B8BS67 39030906
    838822 8jp3:A (2.73) BS17 CLA ? GO:0009416 ... B8BS67 39030906
    838823 8jp3:A (2.73) BS18 CLA ? GO:0009416 ... B8BS67 39030906
    838824 8jp3:A (2.73) BS19 A86 ? GO:0009416 ... B8BS67 39030906
    838825 8jp3:A (2.73) BS20 CLA ? GO:0009416 ... B8BS67 39030906
    838826 8jp3:B (2.73) BS01 A86 ? GO:0009416 ... B8BS67 39030906
    838827 8jp3:B (2.73) BS02 CLA ? GO:0009416 ... B8BS67 39030906
    838828 8jp3:B (2.73) BS03 A86 ? GO:0009416 ... B8BS67 39030906
    838829 8jp3:B (2.73) BS04 A86 ? GO:0009416 ... B8BS67 39030906
    838830 8jp3:B (2.73) BS05 A86 ? GO:0009416 ... B8BS67 39030906
    838831 8jp3:B (2.73) BS06 A86 ? GO:0009416 ... B8BS67 39030906
    838832 8jp3:B (2.73) BS07 A86 ? GO:0009416 ... B8BS67 39030906
    838833 8jp3:B (2.73) BS08 A86 ? GO:0009416 ... B8BS67 39030906
    838834 8jp3:B (2.73) BS09 A86 ? GO:0009416 ... B8BS67 39030906
    838835 8jp3:B (2.73) BS10 CLA ? GO:0009416 ... B8BS67 39030906
    838836 8jp3:B (2.73) BS11 CLA ? GO:0009416 ... B8BS67 39030906
    838837 8jp3:B (2.73) BS12 KC2 ? GO:0009416 ... B8BS67 39030906
    838838 8jp3:B (2.73) BS13 CLA ? GO:0009416 ... B8BS67 39030906
    838839 8jp3:B (2.73) BS14 KC2 ? GO:0009416 ... B8BS67 39030906
    838840 8jp3:B (2.73) BS15 CLA ? GO:0009416 ... B8BS67 39030906
    838841 8jp3:B (2.73) BS16 CLA ? GO:0009416 ... B8BS67 39030906
    838842 8jp3:B (2.73) BS17 KC1 ? GO:0009416 ... B8BS67 39030906
    838843 8jp3:B (2.73) BS18 CLA ? GO:0009416 ... B8BS67 39030906
    838844 8jp3:B (2.73) BS19 CLA ? GO:0009416 ... B8BS67 39030906
    838845 8jp3:B (2.73) BS20 CLA ? GO:0009416 ... B8BS67 39030906
    838846 8jp3:C (2.73) BS01 A86 ? GO:0009416 ... B8BS67 39030906
    838847 8jp3:C (2.73) BS02 CLA ? GO:0009416 ... B8BS67 39030906
    838848 8jp3:C (2.73) BS03 A86 ? GO:0009416 ... B8BS67 39030906
    838849 8jp3:C (2.73) BS04 A86 ? GO:0009416 ... B8BS67 39030906
    838850 8jp3:C (2.73) BS05 A86 ? GO:0009416 ... B8BS67 39030906
    838851 8jp3:C (2.73) BS06 A86 ? GO:0009416 ... B8BS67 39030906
    838852 8jp3:C (2.73) BS07 A86 ? GO:0009416 ... B8BS67 39030906
    838853 8jp3:C (2.73) BS08 A86 ? GO:0009416 ... B8BS67 39030906
    838854 8jp3:C (2.73) BS09 A86 ? GO:0009416 ... B8BS67 39030906
    838855 8jp3:C (2.73) BS10 CLA ? GO:0009416 ... B8BS67 39030906
    838856 8jp3:C (2.73) BS11 CLA ? GO:0009416 ... B8BS67 39030906
    838857 8jp3:C (2.73) BS12 KC2 ? GO:0009416 ... B8BS67 39030906
    838858 8jp3:C (2.73) BS13 CLA ? GO:0009416 ... B8BS67 39030906
    838859 8jp3:C (2.73) BS14 KC2 ? GO:0009416 ... B8BS67 39030906
    838860 8jp3:C (2.73) BS15 CLA ? GO:0009416 ... B8BS67 39030906
    838861 8jp3:C (2.73) BS16 CLA ? GO:0009416 ... B8BS67 39030906
    838862 8jp3:C (2.73) BS17 KC1 ? GO:0009416 ... B8BS67 39030906
    838863 8jp3:C (2.73) BS18 CLA ? GO:0009416 ... B8BS67 39030906
    838864 8jp3:C (2.73) BS19 CLA ? GO:0009416 ... B8BS67 39030906
    838865 8jp3:C (2.73) BS20 CLA ? GO:0009416 ... B8BS67 39030906
    838866 8jp4:A (2.53) BS01 CA ? GO:0016020 ... P49257 38493152
    838867 8jp4:A (2.53) BS02 CA ? GO:0016020 ... P49257 38493152
    838868 8jp4:B (2.53) BS01 CA ? GO:0016020 ... P49257 38493152
    838869 8jp4:B (2.53) BS02 CA ? GO:0016020 ... P49257 38493152
    838870 8jp4:C (2.53) BS01 CA ? GO:0005509 ... Q8NI22 38493152
    838871 8jp4:C (2.53) BS02 CA ? GO:0005509 ... Q8NI22 38493152
    838872 8jp4:C (2.53) BS03 ZN ? GO:0005509 ... Q8NI22 38493152
    838873 8jp4:D (2.53) BS01 CA ? GO:0005509 ... Q8NI22 38493152
    838874 8jp4:D (2.53) BS02 CA ? GO:0005509 ... Q8NI22 38493152
    838875 8jp4:D (2.53) BS03 ZN ? GO:0005509 ... Q8NI22 38493152
    838876 8jp4:E (2.53) BS01 CA ? GO:0016020 ... P49257 38493152
    838877 8jp4:E (2.53) BS02 CA ? GO:0016020 ... P49257 38493152
    838878 8jp4:F (2.53) BS01 CA ? GO:0016020 ... P49257 38493152
    838879 8jp4:F (2.53) BS02 CA ? GO:0016020 ... P49257 38493152
    838880 8jp4:G (2.53) BS01 CA ? GO:0005509 ... Q8NI22 38493152
    838881 8jp4:G (2.53) BS02 CA ? GO:0005509 ... Q8NI22 38493152
    838882 8jp4:G (2.53) BS03 ZN ? GO:0005509 ... Q8NI22 38493152
    838883 8jp4:H (2.53) BS01 CA ? GO:0005509 ... Q8NI22 38493152
    838884 8jp4:H (2.53) BS02 CA ? GO:0005509 ... Q8NI22 38493152
    838885 8jp4:H (2.53) BS03 ZN ? GO:0005509 ... Q8NI22 38493152
    838886 8jp5:A (2.59) BS01 CA ? GO:0016020 ... P49257 38493152
    838887 8jp5:A (2.59) BS02 CA ? GO:0016020 ... P49257 38493152
    838888 8jp5:B (2.59) BS01 CA ? GO:0016020 ... P49257 38493152
    838889 8jp5:B (2.59) BS02 CA ? GO:0016020 ... P49257 38493152
    838890 8jp5:C (2.59) BS01 CA ? GO:0005509 ... Q8NI22 38493152
    838891 8jp5:C (2.59) BS02 CA ? GO:0005509 ... Q8NI22 38493152
    838892 8jp5:C (2.59) BS03 ZN ? GO:0005509 ... Q8NI22 38493152
    838893 8jp5:D (2.59) BS01 CA ? GO:0005509 ... Q8NI22 38493152
    838894 8jp5:D (2.59) BS02 CA ? GO:0005509 ... Q8NI22 38493152
    838895 8jp5:D (2.59) BS03 ZN ? GO:0005509 ... Q8NI22 38493152
    838896 8jp5:E (2.59) BS01 CA ? GO:0016020 ... P49257 38493152
    838897 8jp5:E (2.59) BS02 CA ? GO:0016020 ... P49257 38493152
    838898 8jp5:F (2.59) BS01 CA ? GO:0016020 ... P49257 38493152
    838899 8jp5:F (2.59) BS02 CA ? GO:0016020 ... P49257 38493152
    838900 8jp5:G (2.59) BS01 CA ? GO:0005509 ... Q8NI22 38493152
    838901 8jp5:G (2.59) BS02 CA ? GO:0005509 ... Q8NI22 38493152
    838902 8jp5:G (2.59) BS03 ZN ? GO:0005509 ... Q8NI22 38493152
    838903 8jp5:H (2.59) BS01 CA ? GO:0005509 ... Q8NI22 38493152
    838904 8jp5:H (2.59) BS02 CA ? GO:0005509 ... Q8NI22 38493152
    838905 8jp5:H (2.59) BS03 ZN ? GO:0005509 ... Q8NI22 38493152
    838906 8jp6:A (3.29) BS01 CA ? GO:0016020 ... P49257 38493152
    838907 8jp6:A (3.29) BS02 CA ? GO:0016020 ... P49257 38493152
    838908 8jp6:B (3.29) BS01 CA ? GO:0016020 ... P49257 38493152
    838909 8jp6:B (3.29) BS02 CA ? GO:0016020 ... P49257 38493152
    838910 8jp6:C (3.29) BS01 CA ? GO:0005509 ... Q8NI22 38493152
    838911 8jp6:C (3.29) BS02 CA ? GO:0005509 ... Q8NI22 38493152
    838912 8jp6:C (3.29) BS03 ZN ? GO:0005509 ... Q8NI22 38493152
    838913 8jp6:D (3.29) BS01 CA ? GO:0005509 ... Q8NI22 38493152
    838914 8jp6:D (3.29) BS02 CA ? GO:0005509 ... Q8NI22 38493152
    838915 8jp6:D (3.29) BS03 ZN ? GO:0005509 ... Q8NI22 38493152
    838916 8jp6:E (3.29) BS01 CA ? GO:0016020 ... P49257 38493152
    838917 8jp6:E (3.29) BS02 CA ? GO:0016020 ... P49257 38493152
    838918 8jp6:F (3.29) BS01 CA ? GO:0016020 ... P49257 38493152
    838919 8jp6:F (3.29) BS02 CA ? GO:0016020 ... P49257 38493152
    838920 8jp6:G (3.29) BS01 CA ? GO:0005509 ... Q8NI22 38493152
    838921 8jp6:G (3.29) BS02 CA ? GO:0005509 ... Q8NI22 38493152
    838922 8jp6:G (3.29) BS03 ZN ? GO:0005509 ... Q8NI22 38493152
    838923 8jp6:H (3.29) BS01 CA ? GO:0005509 ... Q8NI22 38493152
    838924 8jp6:H (3.29) BS02 CA ? GO:0005509 ... Q8NI22 38493152
    838925 8jp6:H (3.29) BS03 ZN ? GO:0005509 ... Q8NI22 38493152
    838926 8jp7:A (3.51) BS01 CA ? GO:0016020 ... P49257 38493152
    838927 8jp7:A (3.51) BS02 CA ? GO:0016020 ... P49257 38493152
    838928 8jp7:B (3.51) BS01 CA ? GO:0016020 ... P49257 38493152
    838929 8jp7:B (3.51) BS02 CA ? GO:0016020 ... P49257 38493152
    838930 8jp7:C (3.51) BS01 CA ? GO:0005509 ... Q8NI22 38493152
    838931 8jp7:C (3.51) BS02 CA ? GO:0005509 ... Q8NI22 38493152
    838932 8jp7:C (3.51) BS03 ZN ? GO:0005509 ... Q8NI22 38493152
    838933 8jp7:D (3.51) BS01 CA ? GO:0005509 ... Q8NI22 38493152
    838934 8jp7:D (3.51) BS02 CA ? GO:0005509 ... Q8NI22 38493152
    838935 8jp7:D (3.51) BS03 ZN ? GO:0005509 ... Q8NI22 38493152
    838936 8jp7:E (3.51) BS01 CA ? GO:0016020 ... P49257 38493152
    838937 8jp7:E (3.51) BS02 CA ? GO:0016020 ... P49257 38493152
    838938 8jp7:F (3.51) BS01 CA ? GO:0016020 ... P49257 38493152
    838939 8jp7:F (3.51) BS02 CA ? GO:0016020 ... P49257 38493152
    838940 8jp7:G (3.51) BS01 CA ? GO:0005509 ... Q8NI22 38493152
    838941 8jp7:G (3.51) BS02 CA ? GO:0005509 ... Q8NI22 38493152
    838942 8jp7:G (3.51) BS03 ZN ? GO:0005509 ... Q8NI22 38493152
    838943 8jp7:H (3.51) BS01 CA ? GO:0005509 ... Q8NI22 38493152
    838944 8jp7:H (3.51) BS02 CA ? GO:0005509 ... Q8NI22 38493152
    838945 8jp7:H (3.51) BS03 ZN ? GO:0005509 ... Q8NI22 38493152
    838946 8jp8:A (3.39) BS01 CA ? GO:0016020 ... P49257 38493152
    838947 8jp8:A (3.39) BS02 CA ? GO:0016020 ... P49257 38493152
    838948 8jp8:B (3.39) BS01 CA ? GO:0016020 ... P49257 38493152
    838949 8jp8:B (3.39) BS02 CA ? GO:0016020 ... P49257 38493152
    838950 8jp8:C (3.39) BS01 CA ? GO:0005509 ... Q8NI22 38493152
    838951 8jp8:C (3.39) BS02 CA ? GO:0005509 ... Q8NI22 38493152
    838952 8jp8:C (3.39) BS03 ZN ? GO:0005509 ... Q8NI22 38493152
    838953 8jp8:D (3.39) BS01 CA ? GO:0005509 ... Q8NI22 38493152
    838954 8jp8:D (3.39) BS02 CA ? GO:0005509 ... Q8NI22 38493152
    838955 8jp8:D (3.39) BS03 ZN ? GO:0005509 ... Q8NI22 38493152
    838956 8jp8:E (3.39) BS01 CA ? GO:0016020 ... P49257 38493152
    838957 8jp8:E (3.39) BS02 CA ? GO:0016020 ... P49257 38493152
    838958 8jp8:F (3.39) BS01 CA ? GO:0016020 ... P49257 38493152
    838959 8jp8:F (3.39) BS02 CA ? GO:0016020 ... P49257 38493152
    838960 8jp8:G (3.39) BS01 CA ? GO:0005509 ... Q8NI22 38493152
    838961 8jp8:G (3.39) BS02 CA ? GO:0005509 ... Q8NI22 38493152
    838962 8jp8:G (3.39) BS03 ZN ? GO:0005509 ... Q8NI22 38493152
    838963 8jp8:H (3.39) BS01 CA ? GO:0005509 ... Q8NI22 38493152
    838964 8jp8:H (3.39) BS02 CA ? GO:0005509 ... Q8NI22 38493152
    838965 8jp8:H (3.39) BS03 ZN ? GO:0005509 ... Q8NI22 38493152
    838966 8jp9:A (3.37) BS01 CA ? GO:0016020 ... P49257 38493152
    838967 8jp9:A (3.37) BS02 CA ? GO:0016020 ... P49257 38493152
    838968 8jp9:B (3.37) BS01 CA ? GO:0016020 ... P49257 38493152
    838969 8jp9:B (3.37) BS02 CA ? GO:0016020 ... P49257 38493152
    838970 8jp9:C (3.37) BS01 CA ? GO:0005509 ... Q8NI22 38493152
    838971 8jp9:C (3.37) BS02 CA ? GO:0005509 ... Q8NI22 38493152
    838972 8jp9:C (3.37) BS03 ZN ? GO:0005509 ... Q8NI22 38493152
    838973 8jp9:D (3.37) BS01 CA ? GO:0005509 ... Q8NI22 38493152
    838974 8jp9:D (3.37) BS02 CA ? GO:0005509 ... Q8NI22 38493152
    838975 8jp9:D (3.37) BS03 ZN ? GO:0005509 ... Q8NI22 38493152
    838976 8jp9:E (3.37) BS01 CA ? GO:0016020 ... P49257 38493152
    838977 8jp9:E (3.37) BS02 CA ? GO:0016020 ... P49257 38493152
    838978 8jp9:F (3.37) BS01 CA ? GO:0016020 ... P49257 38493152
    838979 8jp9:F (3.37) BS02 CA ? GO:0016020 ... P49257 38493152
    838980 8jp9:G (3.37) BS01 CA ? GO:0005509 ... Q8NI22 38493152
    838981 8jp9:G (3.37) BS02 CA ? GO:0005509 ... Q8NI22 38493152
    838982 8jp9:G (3.37) BS03 ZN ? GO:0005509 ... Q8NI22 38493152
    838983 8jp9:H (3.37) BS01 CA ? GO:0005509 ... Q8NI22 38493152
    838984 8jp9:H (3.37) BS02 CA ? GO:0005509 ... Q8NI22 38493152
    838985 8jp9:H (3.37) BS03 ZN ? GO:0005509 ... Q8NI22 38493152
    838986 8jpb:G (3.07) BS01 STU 2.7.11.15 GO:0001664 ... P21146 37532940
    838987 8jpb:G (3.07) BS02 SRW 2.7.11.15 GO:0001664 ... P21146 37532940
    838988 8jpb:Q (3.07) BS01 GDP ? GO:0001664 ... P50148 37532940
    838989 8jpb:Q (3.07) BS02 MG ? GO:0001664 ... P50148 37532940
    838990 8jpb:Q (3.07) BS03 ALF ? GO:0001664 ... P50148 37532940
    838991 8jpb:R (3.07) BS01 peptide ? GO:0001659 ... P30989 37532940
    838992 8jpb:R (3.07) BS02 SRW ? GO:0001659 ... P30989 37532940
    838993 8jpc:G (3.07) BS01 SRW 2.7.11.15 GO:0001664 ... P21146 37532940
    838994 8jpc:G (3.07) BS02 STU 2.7.11.15 GO:0001664 ... P21146 37532940
    838995 8jpc:Q (3.07) BS01 GDP ? GO:0001664 ... P50148 37532940
    838996 8jpc:Q (3.07) BS02 MG ? GO:0001664 ... P50148 37532940
    838997 8jpc:Q (3.07) BS03 ALF ? GO:0001664 ... P50148 37532940
    838998 8jpc:R (3.07) BS01 peptide ? GO:0001659 ... P30989 37532940
    838999 8jpc:R (3.07) BS02 SRW ? GO:0001659 ... P30989 37532940
    839000 8jpd:G (2.81) BS01 STU 2.7.11.15 GO:0001664 ... P21146 37532940

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).