SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    839001 8jpe:Q (2.91) BS01 GDP ? GO:0001664 ... P50148 37532940
    839002 8jpe:Q (2.91) BS02 MG ? GO:0001664 ... P50148 37532940
    839003 8jpe:Q (2.91) BS03 ALF ? GO:0001664 ... P50148 37532940
    839004 8jpf:R (3.02) BS01 peptide ? GO:0001659 ... P30989 37532940
    839005 8jpf:R (3.02) BS02 SRW ? GO:0001659 ... P30989 37532940
    839006 8jpg:A (6.76) BS01 CA ? GO:0016020 ... P49257 38493152
    839007 8jpg:A (6.76) BS02 CA ? GO:0016020 ... P49257 38493152
    839008 8jpg:B (6.76) BS01 CA ? GO:0016020 ... P49257 38493152
    839009 8jpg:B (6.76) BS02 CA ? GO:0016020 ... P49257 38493152
    839010 8jpg:C (6.76) BS01 CA ? GO:0005509 ... Q8NI22 38493152
    839011 8jpg:C (6.76) BS02 CA ? GO:0005509 ... Q8NI22 38493152
    839012 8jpg:C (6.76) BS03 ZN ? GO:0005509 ... Q8NI22 38493152
    839013 8jpg:D (6.76) BS01 CA ? GO:0005509 ... Q8NI22 38493152
    839014 8jpg:D (6.76) BS02 CA ? GO:0005509 ... Q8NI22 38493152
    839015 8jpg:D (6.76) BS03 ZN ? GO:0005509 ... Q8NI22 38493152
    839016 8jpg:E (6.76) BS01 CA ? GO:0016020 ... P49257 38493152
    839017 8jpg:E (6.76) BS02 CA ? GO:0016020 ... P49257 38493152
    839018 8jpg:F (6.76) BS01 CA ? GO:0016020 ... P49257 38493152
    839019 8jpg:F (6.76) BS02 CA ? GO:0016020 ... P49257 38493152
    839020 8jpg:G (6.76) BS01 CA ? GO:0005509 ... Q8NI22 38493152
    839021 8jpg:G (6.76) BS02 CA ? GO:0005509 ... Q8NI22 38493152
    839022 8jpg:G (6.76) BS03 ZN ? GO:0005509 ... Q8NI22 38493152
    839023 8jpg:H (6.76) BS01 CA ? GO:0005509 ... Q8NI22 38493152
    839024 8jpg:H (6.76) BS02 CA ? GO:0005509 ... Q8NI22 38493152
    839025 8jpg:H (6.76) BS03 ZN ? GO:0005509 ... Q8NI22 38493152
    839026 8jpn:R (2.9) BS01 U9S 1.13.12.13 GO:0002001 ... P0ABE7
    Q9BXA5
    Q9GV45
    38744983
    839027 8jpo:A (3.4) BS01 ATP ? GO:0005247 ... P51797 N/A
    839028 8jpo:B (3.4) BS01 ATP ? GO:0005247 ... P51797 N/A
    839029 8jpq:A (2.7) BS01 V3E 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 37609788
    839030 8jpr:A (3.4) BS01 ATP ? GO:0005247 ... P51797 N/A
    839031 8jpr:B (3.4) BS01 ATP ? GO:0005247 ... P51797 N/A
    839032 8jpw:A (2.66) BS01 FAD 1.4.3.11 GO:0016491 ... Q8L3C7 37487431
    839033 8jpw:A (2.66) BS02 AKG 1.4.3.11 GO:0016491 ... Q8L3C7 37487431
    839034 8jpx:A (2.9) BS01 dna 3.1.24.- GO:0003676 ... Q8U3D2 38295801
    839035 8jpx:A (2.9) BS02 dna 3.1.24.- GO:0003676 ... Q8U3D2 38295801
    839036 8jpx:A (2.9) BS03 dna 3.1.24.- GO:0003676 ... Q8U3D2 38295801
    839037 8jpx:A (2.9) BS04 MG 3.1.24.- GO:0003676 ... Q8U3D2 38295801
    839038 8jpx:A (2.9) BS05 MG 3.1.24.- GO:0003676 ... Q8U3D2 38295801
    839039 8jpx:B (2.9) BS01 dna 3.1.24.- GO:0003676 ... Q8U3D2 38295801
    839040 8jpx:B (2.9) BS02 dna 3.1.24.- GO:0003676 ... Q8U3D2 38295801
    839041 8jpx:B (2.9) BS03 dna 3.1.24.- GO:0003676 ... Q8U3D2 38295801
    839042 8jpx:B (2.9) BS04 MG 3.1.24.- GO:0003676 ... Q8U3D2 38295801
    839043 8jpx:B (2.9) BS05 MG 3.1.24.- GO:0003676 ... Q8U3D2 38295801
    839044 8jpy:A (-1.00) BS01 ZN N/A GO:0003700 ... Q01101 N/A
    839045 8jpy:A (-1.00) BS02 ZN N/A GO:0003700 ... Q01101 N/A
    839046 8jpz:A (2.08) BS01 FAD 1.1.3.4 GO:0000166 ... Q5Q041 N/A
    839047 8jpz:A (2.08) BS02 OXY 1.1.3.4 GO:0000166 ... Q5Q041 N/A
    839048 8jpz:B (2.08) BS01 FAD 1.1.3.4 GO:0000166 ... Q5Q041 N/A
    839049 8jpz:B (2.08) BS02 OXY 1.1.3.4 GO:0000166 ... Q5Q041 N/A
    839050 8jq0:A (2.9) BS01 dna N/A N/A Q6LCP1 N/A
    839051 8jq0:A (2.9) BS02 dna N/A N/A Q6LCP1 N/A
    839052 8jq0:A (2.9) BS03 ZN N/A N/A Q6LCP1 N/A
    839053 8jq0:A (2.9) BS04 ZN N/A N/A Q6LCP1 N/A
    839054 8jq0:D (2.9) BS01 dna N/A N/A Q6LCP1 N/A
    839055 8jq0:D (2.9) BS02 dna N/A N/A Q6LCP1 N/A
    839056 8jq0:D (2.9) BS03 ZN N/A N/A Q6LCP1 N/A
    839057 8jq0:D (2.9) BS04 ZN N/A N/A Q6LCP1 N/A
    839058 8jq1:A (-1.00) BS01 ZN N/A GO:0003700 ... Q01101 N/A
    839059 8jq1:A (-1.00) BS02 ZN N/A GO:0003700 ... Q01101 N/A
    839060 8jq3:A (1.9) BS01 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    839061 8jq3:A (1.9) BS02 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    839062 8jq3:B (1.9) BS01 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    839063 8jq3:B (1.9) BS02 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    839064 8jq3:C (1.9) BS01 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    839065 8jq3:C (1.9) BS02 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    839066 8jq3:D (1.9) BS01 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    839067 8jq3:D (1.9) BS02 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    839068 8jq4:A (1.61) BS01 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    839069 8jq4:A (1.61) BS02 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    839070 8jq4:A (1.61) BS03 RM4 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    839071 8jq4:A (1.61) BS04 RAM 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    839072 8jq4:B (1.61) BS01 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    839073 8jq4:B (1.61) BS02 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    839074 8jq4:B (1.61) BS03 RM4 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    839075 8jq4:C (1.61) BS01 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    839076 8jq4:C (1.61) BS02 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    839077 8jq4:C (1.61) BS03 RM4 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    839078 8jq4:D (1.61) BS01 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    839079 8jq4:D (1.61) BS02 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    839080 8jq4:D (1.61) BS03 RM4 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    839081 8jq4:D (1.61) BS04 RM4 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    839082 8jq4:D (1.61) BS05 RAM 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    839083 8jq5:A (1.73) BS01 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    839084 8jq5:A (1.73) BS02 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    839085 8jq5:A (1.73) BS03 PSJ 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    839086 8jq5:A (1.73) BS04 PSV 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    839087 8jq5:B (1.73) BS01 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    839088 8jq5:B (1.73) BS02 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    839089 8jq5:B (1.73) BS03 PSJ 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    839090 8jq5:C (1.73) BS01 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    839091 8jq5:C (1.73) BS02 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    839092 8jq5:C (1.73) BS03 PSJ 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    839093 8jq5:C (1.73) BS04 PSV 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    839094 8jq5:C (1.73) BS05 PSV 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    839095 8jq5:D (1.73) BS01 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    839096 8jq5:D (1.73) BS02 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    839097 8jq5:D (1.73) BS03 PSJ 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    839098 8jq5:D (1.73) BS04 PSV 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    839099 8jq6:A (1.71) BS01 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    839100 8jq6:A (1.71) BS02 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    839101 8jq6:A (1.71) BS03 ALL 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    839102 8jq6:A (1.71) BS04 ALL 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    839103 8jq6:B (1.71) BS01 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    839104 8jq6:B (1.71) BS02 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    839105 8jq6:B (1.71) BS03 ALL 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    839106 8jq6:C (1.71) BS01 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    839107 8jq6:C (1.71) BS02 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    839108 8jq6:C (1.71) BS03 AFD 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    839109 8jq6:D (1.71) BS01 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    839110 8jq6:D (1.71) BS02 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    839111 8jq6:D (1.71) BS03 AFD 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    839112 8jq6:D (1.71) BS04 ALL 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    839113 8jq6:D (1.71) BS05 ALL 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    839114 8jqe:A (2.31) BS01 MN ? GO:0005975 ... G0J5L4 38141024
    839115 8jqe:B (2.31) BS01 MN ? GO:0005975 ... G0J5L4 38141024
    839116 8jqo:A (1.6) BS01 FAD N/A GO:0071949 ... N/A 38029967
    839117 8jqo:B (1.6) BS01 FAD N/A GO:0071949 ... N/A 38029967
    839118 8jqo:C (1.6) BS01 FAD N/A GO:0071949 ... N/A 38029967
    839119 8jqo:D (1.6) BS01 FAD N/A GO:0071949 ... N/A 38029967
    839120 8jqp:A (1.65) BS01 FAD N/A GO:0071949 ... N/A 38029967
    839121 8jqp:B (1.65) BS01 FAD N/A GO:0071949 ... N/A 38029967
    839122 8jqq:A (2.06) BS01 FAD N/A GO:0071949 ... N/A 38029967
    839123 8jqq:B (2.06) BS01 FAD N/A GO:0071949 ... N/A 38029967
    839124 8jqr:A (2.75) BS01 EZI N/A GO:0000122 ... Q8NER1 39107321
    839125 8jqr:A (2.75) BS02 CLR N/A GO:0000122 ... Q8NER1 39107321
    839126 8jqr:B (2.75) BS01 EZI N/A GO:0000122 ... Q8NER1 39107321
    839127 8jqr:B (2.75) BS02 CLR N/A GO:0000122 ... Q8NER1 39107321
    839128 8jqr:C (2.75) BS01 EZI N/A GO:0000122 ... Q8NER1 39107321
    839129 8jqr:C (2.75) BS02 CLR N/A GO:0000122 ... Q8NER1 39107321
    839130 8jqr:D (2.75) BS01 EZI N/A GO:0000122 ... Q8NER1 39107321
    839131 8jqr:D (2.75) BS02 CLR N/A GO:0000122 ... Q8NER1 39107321
    839132 8jqt:A (1.99) BS01 peptide N/A N/A Q6JWQ7 N/A
    839133 8jqu:A (1.798) BS01 GNP N/A GO:0003924 ... A0A109NYM0 N/A
    839134 8jqu:A (1.798) BS02 MG N/A GO:0003924 ... A0A109NYM0 N/A
    839135 8jqz:A (3.05) BS01 GNP ? GO:0000045 ... U5NFV2 37705969
    839136 8jqz:B (3.05) BS01 GNP ? GO:0000045 ... U5NFV2 37705969
    839137 8jr0:1 (2.8) BS01 UTI ? GO:0005886 ... P9WPS1 38961288
    839138 8jr0:2 (2.8) BS01 UTI ? GO:0005886 ... P9WPS1 38961288
    839139 8jr0:4 (2.8) BS01 UTI ? GO:0005886 ... P9WPS1 38961288
    839140 8jr0:5 (2.8) BS01 UTI ? GO:0005886 ... P9WPS1 38961288
    839141 8jr0:5 (2.8) BS02 UTI ? GO:0005886 ... P9WPS1 38961288
    839142 8jr0:6 (2.8) BS01 UTI ? GO:0005886 ... P9WPS1 38961288
    839143 8jr0:6 (2.8) BS02 UTI ? GO:0005886 ... P9WPS1 38961288
    839144 8jr0:7 (2.8) BS01 UTI ? GO:0005886 ... P9WPS1 38961288
    839145 8jr0:7 (2.8) BS02 UTI ? GO:0005886 ... P9WPS1 38961288
    839146 8jr0:8 (2.8) BS01 UTI ? GO:0005886 ... P9WPS1 38961288
    839147 8jr0:8 (2.8) BS02 UTI ? GO:0005886 ... P9WPS1 38961288
    839148 8jr0:9 (2.8) BS01 UTI ? GO:0005886 ... P9WPS1 38961288
    839149 8jr0:9 (2.8) BS02 UTI ? GO:0005886 ... P9WPS1 38961288
    839150 8jr0:A (2.8) BS01 ATP 7.1.2.2 GO:0005524 ... P9WPU7 38961288
    839151 8jr0:B (2.8) BS01 ATP 7.1.2.2 GO:0005524 ... P9WPU7 38961288
    839152 8jr0:C (2.8) BS01 ATP 7.1.2.2 GO:0005524 ... P9WPU7 38961288
    839153 8jr0:C (2.8) BS02 ADP 7.1.2.2 GO:0005524 ... P9WPU7 38961288
    839154 8jr0:D (2.8) BS01 ADP 7.1.2.2 GO:0005524 ... P9WPU5 38961288
    839155 8jr0:F (2.8) BS01 ADP 7.1.2.2 GO:0005524 ... P9WPU5 38961288
    839156 8jr0:F (2.8) BS02 MG 7.1.2.2 GO:0005524 ... P9WPU5 38961288
    839157 8jr0:a (2.8) BS01 UTI ? GO:0005886 ... P9WPV7 38961288
    839158 8jr1:1 (3.17) BS01 UTI ? GO:0005886 ... P9WPS1 38961288
    839159 8jr1:2 (3.17) BS01 UTI ? GO:0005886 ... P9WPS1 38961288
    839160 8jr1:4 (3.17) BS01 UTI ? GO:0005886 ... P9WPS1 38961288
    839161 8jr1:5 (3.17) BS01 UTI ? GO:0005886 ... P9WPS1 38961288
    839162 8jr1:5 (3.17) BS02 UTI ? GO:0005886 ... P9WPS1 38961288
    839163 8jr1:6 (3.17) BS01 UTI ? GO:0005886 ... P9WPS1 38961288
    839164 8jr1:7 (3.17) BS01 UTI ? GO:0005886 ... P9WPS1 38961288
    839165 8jr1:7 (3.17) BS02 UTI ? GO:0005886 ... P9WPS1 38961288
    839166 8jr1:8 (3.17) BS01 UTI ? GO:0005886 ... P9WPS1 38961288
    839167 8jr1:8 (3.17) BS02 UTI ? GO:0005886 ... P9WPS1 38961288
    839168 8jr1:9 (3.17) BS01 UTI ? GO:0005886 ... P9WPS1 38961288
    839169 8jr1:9 (3.17) BS02 UTI ? GO:0005886 ... P9WPS1 38961288
    839170 8jr1:a (3.17) BS01 UTI ? GO:0005886 ... P9WPV7 38961288
    839171 8jr4:A (2.3) BS01 peptide N/A GO:0006955 ... N/A N/A
    839172 8jr4:B (2.3) BS01 peptide N/A GO:0006955 ... N/A N/A
    839173 8jr8:A (3.48) BS01 rna N/A GO:0003676 ... A0A316E3U6 N/A
    839174 8jr8:A (3.48) BS02 dna N/A GO:0003676 ... A0A316E3U6 N/A
    839175 8jr8:B (3.48) BS01 rna N/A GO:0007165 ... A0A316E683 N/A
    839176 8jr8:B (3.48) BS02 dna N/A GO:0007165 ... A0A316E683 N/A
    839177 8jr8:C (3.48) BS01 rna N/A GO:0003676 ... A0A316E3U6 N/A
    839178 8jr8:C (3.48) BS02 dna N/A GO:0003676 ... A0A316E3U6 N/A
    839179 8jr8:D (3.48) BS01 rna N/A GO:0007165 ... A0A316E683 N/A
    839180 8jr8:D (3.48) BS02 dna N/A GO:0007165 ... A0A316E683 N/A
    839181 8jr9:A (2.57) BS01 KHF ? GO:0003924 ... P63092
    P63096
    37524305
    839182 8jr9:R (2.57) BS01 KHF ? GO:0004888 ... Q03431 37524305
    839183 8jrd:A (1.83) BS01 COA N/A GO:0009058 ... P24826 38735137
    839184 8jrd:A (1.83) BS02 NAR N/A GO:0009058 ... P24826 38735137
    839185 8jrd:B (1.83) BS01 COA N/A GO:0009058 ... P24826 38735137
    839186 8jrd:B (1.83) BS02 NAR N/A GO:0009058 ... P24826 38735137
    839187 8jri:A (3.4) BS01 ATP N/A GO:0000502 ... P35998 N/A
    839188 8jri:B (3.4) BS01 ATP N/A GO:0000502 ... P62191 N/A
    839189 8jri:B (3.4) BS02 ATP N/A GO:0000502 ... P62191 N/A
    839190 8jri:C (3.4) BS01 ADP N/A GO:0000502 ... P62195 N/A
    839191 8jri:D (3.4) BS01 ATP N/A GO:0000502 ... P43686 N/A
    839192 8jri:E (3.4) BS01 ATP N/A GO:0000502 ... P62333 N/A
    839193 8jri:E (3.4) BS02 ATP N/A GO:0000502 ... P62333 N/A
    839194 8jri:F (3.4) BS01 ATP N/A GO:0000502 ... P17980 N/A
    839195 8jri:F (3.4) BS02 ADP N/A GO:0000502 ... P17980 N/A
    839196 8jri:F (3.4) BS03 MG N/A GO:0000502 ... P17980 N/A
    839197 8jrj:A (2.5) BS01 peptide N/A GO:0006955 ... N/A N/A
    839198 8jrj:B (2.5) BS01 peptide N/A GO:0006955 ... N/A N/A
    839199 8jrk:A (2.3) BS01 peptide N/A GO:0006955 ... N/A N/A
    839200 8jrk:B (2.3) BS01 peptide N/A GO:0006955 ... N/A N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).