SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    839201 8jrk:C (2.3) BS01 peptide N/A GO:0006955 ... N/A N/A
    839202 8jrk:D (2.3) BS01 peptide N/A GO:0006955 ... N/A N/A
    839203 8jrl:A (2.07) BS01 HEM ? GO:0004497 ... A0A077KEB8 N/A
    839204 8jrl:A (2.07) BS02 V3X ? GO:0004497 ... A0A077KEB8 N/A
    839205 8jrn:B (2.6) BS01 ZN ? GO:0003677 ... P03126 38670961
    839206 8jrn:B (2.6) BS02 ZN ? GO:0003677 ... P03126 38670961
    839207 8jrn:D (2.6) BS01 ZN ? GO:0003677 ... P03126 38670961
    839208 8jrn:D (2.6) BS02 ZN ? GO:0003677 ... P03126 38670961
    839209 8jro:B (3.01) BS01 ZN ? GO:0003677 ... P03126 38670961
    839210 8jro:B (3.01) BS02 ZN ? GO:0003677 ... P03126 38670961
    839211 8jro:D (3.01) BS01 ZN ? GO:0003677 ... P03126 38670961
    839212 8jro:D (3.01) BS02 ZN ? GO:0003677 ... P03126 38670961
    839213 8jrp:B (3.58) BS01 ZN ? N/A P03126 38670961
    839214 8jrp:B (3.58) BS02 ZN ? N/A P03126 38670961
    839215 8jrp:D (3.58) BS01 ZN ? N/A P03126 38670961
    839216 8jrp:D (3.58) BS02 ZN ? N/A P03126 38670961
    839217 8jrq:B (4.15) BS01 ZN ? GO:0003677 ... P03126 38670961
    839218 8jrq:B (4.15) BS02 ZN ? GO:0003677 ... P03126 38670961
    839219 8jrq:D (4.15) BS01 ZN ? GO:0003677 ... P03126 38670961
    839220 8jrq:D (4.15) BS02 ZN ? GO:0003677 ... P03126 38670961
    839221 8jrr:B (4.35) BS01 ZN ? N/A P03126 38670961
    839222 8jrr:D (4.35) BS01 ZN ? N/A P03126 38670961
    839223 8jrt:A (3.6) BS01 ATP N/A GO:0000502 ... P35998 N/A
    839224 8jrt:B (3.6) BS01 ATP N/A GO:0000502 ... P62191 N/A
    839225 8jrt:C (3.6) BS01 ADP N/A GO:0000502 ... P62195 N/A
    839226 8jrt:D (3.6) BS01 ATP N/A GO:0000502 ... P43686 N/A
    839227 8jrt:E (3.6) BS01 ATP N/A GO:0000502 ... P62333 N/A
    839228 8jrt:F (3.6) BS01 ADP N/A GO:0000502 ... P17980 N/A
    839229 8jru:R (3.5) BS01 PIO ?
    3.4.21.69
    GO:0004888 ... P03435
    P04070
    P30518
    P47871
    37558880
    839230 8jrv:A (3.3) BS01 PIO ? GO:0000139 ... P49407 37558880
    839231 8jrv:R (3.3) BS01 peptide ?
    3.4.21.69
    GO:0004888 ... P03435
    P04070
    P30518
    P47871
    37558880
    839232 8js5:A (2.95) BS01 HEM N/A GO:0006355 ... P23222 N/A
    839233 8js5:B (2.95) BS01 HEM N/A GO:0006355 ... P23222 N/A
    839234 8js5:C (2.95) BS01 HEM N/A GO:0006355 ... P23222 N/A
    839235 8js5:D (2.95) BS01 HEM N/A GO:0006355 ... P23222 N/A
    839236 8js5:E (2.95) BS01 HEM N/A GO:0006355 ... P23222 N/A
    839237 8js5:F (2.95) BS01 HEM N/A GO:0006355 ... P23222 N/A
    839238 8js5:G (2.95) BS01 HEM N/A GO:0006355 ... P23222 N/A
    839239 8js5:H (2.95) BS01 HEM N/A GO:0006355 ... P23222 N/A
    839240 8js5:I (2.95) BS01 HEM N/A GO:0006355 ... P23222 N/A
    839241 8js5:J (2.95) BS01 HEM N/A GO:0006355 ... P23222 N/A
    839242 8js6:A (2.7) BS01 HEM N/A GO:0006355 ... P23222 N/A
    839243 8js6:B (2.7) BS01 HEM N/A GO:0006355 ... P23222 N/A
    839244 8js6:C (2.7) BS01 HEM N/A GO:0006355 ... P23222 N/A
    839245 8js6:D (2.7) BS01 HEM N/A GO:0006355 ... P23222 N/A
    839246 8js6:E (2.7) BS01 HEM N/A GO:0006355 ... P23222 N/A
    839247 8js6:F (2.7) BS01 HEM N/A GO:0006355 ... P23222 N/A
    839248 8js6:G (2.7) BS01 HEM N/A GO:0006355 ... P23222 N/A
    839249 8js6:H (2.7) BS01 HEM N/A GO:0006355 ... P23222 N/A
    839250 8js6:I (2.7) BS01 HEM N/A GO:0006355 ... P23222 N/A
    839251 8js6:J (2.7) BS01 HEM N/A GO:0006355 ... P23222 N/A
    839252 8js7:A (2.85) BS01 HEM N/A GO:0006355 ... P23222 N/A
    839253 8js7:B (2.85) BS01 HEM N/A GO:0006355 ... P23222 N/A
    839254 8js7:C (2.85) BS01 HEM N/A GO:0006355 ... P23222 N/A
    839255 8js7:D (2.85) BS01 HEM N/A GO:0006355 ... P23222 N/A
    839256 8js7:E (2.85) BS01 HEM N/A GO:0006355 ... P23222 N/A
    839257 8js7:F (2.85) BS01 HEM N/A GO:0006355 ... P23222 N/A
    839258 8js7:G (2.85) BS01 HEM N/A GO:0006355 ... P23222 N/A
    839259 8js7:H (2.85) BS01 HEM N/A GO:0006355 ... P23222 N/A
    839260 8js7:I (2.85) BS01 HEM N/A GO:0006355 ... P23222 N/A
    839261 8js7:J (2.85) BS01 HEM N/A GO:0006355 ... P23222 N/A
    839262 8js8:A (2.88) BS01 UKX ? GO:0005783 ... Q7L0J3 38637505
    839263 8js9:B (3.01) BS01 FUC ? GO:0005576 ... Q45894 38637505
    839264 8jsc:C (2.16) BS01 6FA 1.6.5.- GO:0003677 ... Q9BRQ8 37739993
    839265 8jsc:C (2.16) BS02 NAP 1.6.5.- GO:0003677 ... Q9BRQ8 37739993
    839266 8jsg:1 (4.6) BS01 rna ? GO:0002181 ... P0A7T7 38148682
    839267 8jsg:2 (4.6) BS01 rna ? GO:0003735 ... P68679 38148682
    839268 8jsg:3 (4.6) BS01 rna ? GO:0000028 ... P0A7U7 38148682
    839269 8jsg:A (4.6) BS01 rna ? GO:0003723 ... P0A707 38148682
    839270 8jsg:P (4.6) BS01 rna ? GO:0000028 ... P0AG63 38148682
    839271 8jsg:h (4.6) BS01 rna ? GO:0003676 ... P0A7V3 38148682
    839272 8jsg:j (4.6) BS01 rna ? GO:0000028 ... P0A7V0 38148682
    839273 8jsg:k (4.6) BS01 rna ? GO:0000028 ... P0A7W1 38148682
    839274 8jsg:l (4.6) BS01 rna ? GO:0000028 ... P0A7V8 38148682
    839275 8jsg:m (4.6) BS01 rna ? GO:0003723 ... P02359 38148682
    839276 8jsg:n (4.6) BS01 rna ? GO:0003735 ... P02358 38148682
    839277 8jsg:o (4.6) BS01 rna ? GO:0000049 ... P0A7X3 38148682
    839278 8jsg:p (4.6) BS01 rna ? GO:0000028 ... P0A7W7 38148682
    839279 8jsg:q (4.6) BS01 rna ? GO:0002181 ... P0A7R9 38148682
    839280 8jsg:r (4.6) BS01 rna ? GO:0000049 ... P0A7R5 38148682
    839281 8jsg:s (4.6) BS01 rna ? GO:0000049 ... P0A7S9 38148682
    839282 8jsg:t (4.6) BS01 rna ? GO:0000049 ... P0A7S3 38148682
    839283 8jsg:u (4.6) BS01 rna ? GO:0000028 ... P0ADZ4 38148682
    839284 8jsg:w (4.6) BS01 rna ? GO:0000028 ... P0AG59 38148682
    839285 8jsg:y (4.6) BS01 rna ? GO:0000028 ... P0A7T3 38148682
    839286 8jsg:z (4.6) BS01 rna ? GO:0003723 ... P0A7U3 38148682
    839287 8jsh:1 (4.4) BS01 rna ? GO:0002181 ... P0A7T7 38148682
    839288 8jsh:2 (4.4) BS01 rna ? GO:0000028 ... P68679 38148682
    839289 8jsh:3 (4.4) BS01 rna ? GO:0000028 ... P0A7U7 38148682
    839290 8jsh:A (4.4) BS01 rna ? GO:0003723 ... P0A707 38148682
    839291 8jsh:P (4.4) BS01 rna ? GO:0000028 ... P0AG63 38148682
    839292 8jsh:k (4.4) BS01 rna ? GO:0000028 ... P0A7W1 38148682
    839293 8jsh:l (4.4) BS01 rna ? GO:0000028 ... P0A7V8 38148682
    839294 8jsh:n (4.4) BS01 rna ? GO:0002181 ... P02358 38148682
    839295 8jsh:p (4.4) BS01 rna ? GO:0000028 ... P0A7W7 38148682
    839296 8jsh:q (4.4) BS01 rna ? GO:0002181 ... P0A7R9 38148682
    839297 8jsh:t (4.4) BS01 rna ? GO:0000049 ... P0A7S3 38148682
    839298 8jsh:u (4.4) BS01 rna ? GO:0000028 ... P0ADZ4 38148682
    839299 8jsh:y (4.4) BS01 rna ? GO:0000028 ... P0A7T3 38148682
    839300 8jsi:A (2.9) BS01 dna N/A GO:0003676 ... A0A0Q2M2Z1 N/A
    839301 8jsi:A (2.9) BS02 dna N/A GO:0003676 ... A0A0Q2M2Z1 N/A
    839302 8jsi:A (2.9) BS03 ZN N/A GO:0003676 ... A0A0Q2M2Z1 N/A
    839303 8jsi:A (2.9) BS04 MG N/A GO:0003676 ... A0A0Q2M2Z1 N/A
    839304 8jsi:B (2.9) BS01 dna N/A GO:0003676 ... A0A0Q2M2Z1 N/A
    839305 8jsi:B (2.9) BS02 dna N/A GO:0003676 ... A0A0Q2M2Z1 N/A
    839306 8jsi:B (2.9) BS03 ZN N/A GO:0003676 ... A0A0Q2M2Z1 N/A
    839307 8jsi:B (2.9) BS04 MG N/A GO:0003676 ... A0A0Q2M2Z1 N/A
    839308 8jsk:A (2.401) BS01 6SY N/A N/A N/A 38965224
    839309 8jsl:A (2.95) BS01 rna 2.1.1.-
    2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-
    GO:0001172 ... A0A1C4HDB0 37699521
    839310 8jsl:A (2.95) BS02 ZN 2.1.1.-
    2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-
    GO:0001172 ... A0A1C4HDB0 37699521
    839311 8jsm:A (3.3) BS01 rna 2.1.1.-
    2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-
    GO:0001172 ... A0A1C4HDB0 37699521
    839312 8jsm:A (3.3) BS02 ZN 2.1.1.-
    2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-
    GO:0001172 ... A0A1C4HDB0 37699521
    839313 8jsn:A (3.4) BS01 rna 2.1.1.-
    2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-
    GO:0001172 ... A0A1C4HDB0 37699521
    839314 8jsn:A (3.4) BS02 ZN 2.1.1.-
    2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-
    GO:0001172 ... A0A1C4HDB0 37699521
    839315 8jso:R (3.4) BS01 1WE ? GO:0001594 ... P0ABE7
    Q96RJ0
    37935376
    839316 8jsp:R (3.65) BS01 UJL ? GO:0001586 ... P08908 37935376
    839317 8jsr:R (2.9) BS01 UYI N/A N/A Q92847 39833471
    839318 8jsv:A (2.55) BS01 NAP N/A GO:0000166 ... A0AA40WBR8 39824401
    839319 8jsv:B (2.55) BS01 NAP N/A GO:0000166 ... A0AA40WBR8 39824401
    839320 8jsv:C (2.55) BS01 NAP N/A GO:0000166 ... A0AA40WBR8 39824401
    839321 8jsv:D (2.55) BS01 NAP N/A GO:0000166 ... A0AA40WBR8 39824401
    839322 8jsv:E (2.55) BS01 NAP N/A GO:0000166 ... A0AA40WBR8 39824401
    839323 8jsv:F (2.55) BS01 NAP N/A GO:0000166 ... A0AA40WBR8 39824401
    839324 8jsv:G (2.55) BS01 NAP N/A GO:0000166 ... A0AA40WBR8 39824401
    839325 8jsv:H (2.55) BS01 NAP N/A GO:0000166 ... A0AA40WBR8 39824401
    839326 8jsv:I (2.55) BS01 NAP N/A GO:0000166 ... A0AA40WBR8 39824401
    839327 8jsv:J (2.55) BS01 NAP N/A GO:0000166 ... A0AA40WBR8 39824401
    839328 8jsw:A (2.84) BS01 SRO ? GO:0016020 ... Q05940 38081299
    839329 8jsx:A (3.16) BS01 E5E ? GO:0016020 ... Q05940 38777861
    839330 8jsy:A (2.55) BS01 NAP N/A GO:0000166 ... A0AA40WBR8 39824401
    839331 8jsy:B (2.55) BS01 NAP N/A GO:0000166 ... A0AA40WBR8 39824401
    839332 8jsy:C (2.55) BS01 NAP N/A GO:0000166 ... A0AA40WBR8 39824401
    839333 8jsy:D (2.55) BS01 NAP N/A GO:0000166 ... A0AA40WBR8 39824401
    839334 8jsy:E (2.55) BS01 NAP N/A GO:0000166 ... A0AA40WBR8 39824401
    839335 8jsy:F (2.55) BS01 NAP N/A GO:0000166 ... A0AA40WBR8 39824401
    839336 8jsy:G (2.55) BS01 NAP N/A GO:0000166 ... A0AA40WBR8 39824401
    839337 8jsy:H (2.55) BS01 NAP N/A GO:0000166 ... A0AA40WBR8 39824401
    839338 8jsy:I (2.55) BS01 NAP N/A GO:0000166 ... A0AA40WBR8 39824401
    839339 8jsy:J (2.55) BS01 NAP N/A GO:0000166 ... A0AA40WBR8 39824401
    839340 8jsz:A (1.83) BS01 ZN N/A N/A N/A 38965224
    839341 8jsz:B (1.83) BS01 ZN N/A N/A N/A 38965224
    839342 8jt0:A (2.2) BS01 NAP N/A GO:0000166 ... A0AA40WBR8 39824401
    839343 8jt0:B (2.2) BS01 NAP N/A GO:0000166 ... A0AA40WBR8 39824401
    839344 8jt0:C (2.2) BS01 NAP N/A GO:0000166 ... A0AA40WBR8 39824401
    839345 8jt0:D (2.2) BS01 NAP N/A GO:0000166 ... A0AA40WBR8 39824401
    839346 8jt0:E (2.2) BS01 NAP N/A GO:0000166 ... A0AA40WBR8 39824401
    839347 8jt0:F (2.2) BS01 NAP N/A GO:0000166 ... A0AA40WBR8 39824401
    839348 8jt0:G (2.2) BS01 NAP N/A GO:0000166 ... A0AA40WBR8 39824401
    839349 8jt0:H (2.2) BS01 NAP N/A GO:0000166 ... A0AA40WBR8 39824401
    839350 8jt0:I (2.2) BS01 NAP N/A GO:0000166 ... A0AA40WBR8 39824401
    839351 8jt0:J (2.2) BS01 NAP N/A GO:0000166 ... A0AA40WBR8 39824401
    839352 8jt1:A (2.0) BS01 peptide 3.4.24.3 GO:0004222 ... F7IZI6 37698340
    839353 8jt1:A (2.0) BS02 peptide 3.4.24.3 GO:0004222 ... F7IZI6 37698340
    839354 8jt1:A (2.0) BS03 peptide 3.4.24.3 GO:0004222 ... F7IZI6 37698340
    839355 8jt1:A (2.0) BS04 ZN 3.4.24.3 GO:0004222 ... F7IZI6 37698340
    839356 8jt1:A (2.0) BS05 CA 3.4.24.3 GO:0004222 ... F7IZI6 37698340
    839357 8jt1:A (2.0) BS06 CA 3.4.24.3 GO:0004222 ... F7IZI6 37698340
    839358 8jt1:A (2.0) BS07 CA 3.4.24.3 GO:0004222 ... F7IZI6 37698340
    839359 8jt1:A (2.0) BS08 CA 3.4.24.3 GO:0004222 ... F7IZI6 37698340
    839360 8jt1:B (2.0) BS01 peptide 3.4.24.3 GO:0004222 ... F7IZI6 37698340
    839361 8jt1:B (2.0) BS02 peptide 3.4.24.3 GO:0004222 ... F7IZI6 37698340
    839362 8jt1:B (2.0) BS03 peptide 3.4.24.3 GO:0004222 ... F7IZI6 37698340
    839363 8jt1:B (2.0) BS04 ZN 3.4.24.3 GO:0004222 ... F7IZI6 37698340
    839364 8jt1:B (2.0) BS05 CA 3.4.24.3 GO:0004222 ... F7IZI6 37698340
    839365 8jt1:B (2.0) BS06 CA 3.4.24.3 GO:0004222 ... F7IZI6 37698340
    839366 8jt1:B (2.0) BS07 CA 3.4.24.3 GO:0004222 ... F7IZI6 37698340
    839367 8jt1:B (2.0) BS08 CA 3.4.24.3 GO:0004222 ... F7IZI6 37698340
    839368 8jt3:A (2.35) BS01 EQJ ? GO:0008483 ... H8Y6N2 37451216
    839369 8jt3:A (2.35) BS02 EQJ ? GO:0008483 ... H8Y6N2 37451216
    839370 8jt3:B (2.35) BS01 EQJ ? GO:0008483 ... H8Y6N2 37451216
    839371 8jt3:B (2.35) BS02 EQJ ? GO:0008483 ... H8Y6N2 37451216
    839372 8jt3:C (2.35) BS01 EQJ ? GO:0008483 ... H8Y6N2 37451216
    839373 8jt3:C (2.35) BS02 EQJ ? GO:0008483 ... H8Y6N2 37451216
    839374 8jt3:D (2.35) BS01 EQJ ? GO:0008483 ... H8Y6N2 37451216
    839375 8jt3:D (2.35) BS02 EQJ ? GO:0008483 ... H8Y6N2 37451216
    839376 8jt5:A (3.06) BS01 HSM ? GO:0016020 ... Q05940 38777861
    839377 8jt6:R (3.0) BS01 CLR ? GO:0001586 ... P08908
    P0ABE7
    38552625
    839378 8jt6:R (3.0) BS02 CLR ? GO:0001586 ... P08908
    P0ABE7
    38552625
    839379 8jt6:R (3.0) BS03 J40 ? GO:0001586 ... P08908
    P0ABE7
    38552625
    839380 8jt6:R (3.0) BS04 EZX ? GO:0001586 ... P08908
    P0ABE7
    38552625
    839381 8jt7:A (2.34) BS01 FAD N/A GO:0000166 ... A0A177SH44 39420599
    839382 8jt8:A (2.7) BS01 MG ? GO:0004930 ... P0ABE7
    P28223
    38552625
    839383 8jt8:A (2.7) BS02 EZX ? GO:0004930 ... P0ABE7
    P28223
    38552625
    839384 8jt8:A (2.7) BS03 CLR ? GO:0004930 ... P0ABE7
    P28223
    38552625
    839385 8jt8:A (2.7) BS04 CLR ? GO:0004930 ... P0ABE7
    P28223
    38552625
    839386 8jt9:A (2.97) BS01 UYX ? GO:0016020 ... Q05940 38081299
    839387 8jta:A (3.36) BS01 YHL ? GO:0016020 ... Q05940 38081299
    839388 8jtb:A (2.93) BS01 LDP ? GO:0016020 ... Q05940 38777861
    839389 8jtc:A (3.52) BS01 YHR ? GO:0016020 ... Q05940 38081299
    839390 8jtd:J (4.9) BS01 BMA N/A N/A N/A 38665238
    839391 8jtd:J (4.9) BS02 MAN N/A N/A N/A 38665238
    839392 8jtd:N (4.9) BS01 MAN N/A N/A N/A 38665238
    839393 8jti:A (3.8) BS01 ATP N/A N/A P35998 N/A
    839394 8jti:B (3.8) BS01 ATP N/A N/A P62191 N/A
    839395 8jti:B (3.8) BS02 ATP N/A N/A P62191 N/A
    839396 8jti:C (3.8) BS01 ADP N/A N/A P62195 N/A
    839397 8jti:D (3.8) BS01 ATP N/A N/A P43686 N/A
    839398 8jti:E (3.8) BS01 ATP N/A N/A P62333 N/A
    839399 8jti:F (3.8) BS01 ATP N/A N/A P17980 N/A
    839400 8jti:F (3.8) BS02 ADP N/A N/A P17980 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).