SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    839801 8j7k:B (1.36) BS02 R4O 3.1.1.- N/A G9I933 37468532
    839802 8j7l:A (1.59) BS01 RXF 3.1.1.- N/A G9I933 N/A
    839803 8j7l:A (1.59) BS02 RXF 3.1.1.- N/A G9I933 N/A
    839804 8j7l:B (1.59) BS01 RXF 3.1.1.- N/A G9I933 N/A
    839805 8j7l:B (1.59) BS02 RXF 3.1.1.- N/A G9I933 N/A
    839806 8j7m:A (3.1) BS01 CLR ? GO:0005216 ... R1EKX3
    R1FVI4
    38693179
    839807 8j7m:A (3.1) BS02 CLR ? GO:0005216 ... R1EKX3
    R1FVI4
    38693179
    839808 8j7m:B (3.1) BS01 CLR ? GO:0005216 ... R1EKX3
    R1FVI4
    38693179
    839809 8j7m:B (3.1) BS02 CLR ? GO:0005216 ... R1EKX3
    R1FVI4
    38693179
    839810 8j7m:C (3.1) BS01 CLR ? GO:0005216 ... R1EKX3
    R1FVI4
    38693179
    839811 8j7m:C (3.1) BS02 CLR ? GO:0005216 ... R1EKX3
    R1FVI4
    38693179
    839812 8j7m:C (3.1) BS03 CLR ? GO:0005216 ... R1EKX3
    R1FVI4
    38693179
    839813 8j7m:C (3.1) BS04 CLR ? GO:0005216 ... R1EKX3
    R1FVI4
    38693179
    839814 8j7m:D (3.1) BS01 CLR ? GO:0005216 ... R1EKX3
    R1FVI4
    38693179
    839815 8j7m:D (3.1) BS02 CLR ? GO:0005216 ... R1EKX3
    R1FVI4
    38693179
    839816 8j7m:D (3.1) BS03 CLR ? GO:0005216 ... R1EKX3
    R1FVI4
    38693179
    839817 8j7m:D (3.1) BS04 CLR ? GO:0005216 ... R1EKX3
    R1FVI4
    38693179
    839818 8j7o:A (3.83) BS01 BTI 6.4.1.1 GO:0003824 ... P11498 39223421
    839819 8j7o:B (3.83) BS01 BTI 6.4.1.1 GO:0003824 ... P11498 39223421
    839820 8j7o:C (3.83) BS01 BTI 6.4.1.1 GO:0003824 ... P11498 39223421
    839821 8j7o:E (3.83) BS01 BTI 6.4.1.1 GO:0003824 ... P11498 39223421
    839822 8j7r:B (3.7) BS01 rna ? GO:0003723 ... Q04637 37640715
    839823 8j7s:A (2.84) BS01 rna ? GO:0003676 ... A0A316E3U6 37491603
    839824 8j7s:A (2.84) BS02 dna ? GO:0003676 ... A0A316E3U6 37491603
    839825 8j7s:B (2.84) BS01 rna ? GO:0007165 ... A0A316E683 37491603
    839826 8j7s:B (2.84) BS02 dna ? GO:0007165 ... A0A316E683 37491603
    839827 8j7s:E (2.84) BS01 rna ? GO:0003676 ... A0A316E3U6 37491603
    839828 8j7s:E (2.84) BS02 dna ? GO:0003676 ... A0A316E3U6 37491603
    839829 8j7s:F (2.84) BS01 rna ? GO:0007165 ... A0A316E683 37491603
    839830 8j7s:F (2.84) BS02 dna ? GO:0007165 ... A0A316E683 37491603
    839831 8j7s:I (2.84) BS01 rna ? GO:0003676 ... A0A316E3U6 37491603
    839832 8j7s:I (2.84) BS02 dna ? GO:0003676 ... A0A316E3U6 37491603
    839833 8j7s:J (2.84) BS01 rna ? GO:0007165 ... A0A316E683 37491603
    839834 8j7s:J (2.84) BS02 dna ? GO:0007165 ... A0A316E683 37491603
    839835 8j7s:M (2.84) BS01 rna ? GO:0003676 ... A0A316E3U6 37491603
    839836 8j7s:M (2.84) BS02 dna ? GO:0003676 ... A0A316E3U6 37491603
    839837 8j7s:N (2.84) BS01 rna ? GO:0007165 ... A0A316E683 37491603
    839838 8j7s:N (2.84) BS02 dna ? GO:0007165 ... A0A316E683 37491603
    839839 8j7u:A (3.12) BS01 ZN ? GO:0000139 ... Q8NEW0 37553324
    839840 8j7u:B (3.12) BS01 ZN ? GO:0000139 ... Q8NEW0 37553324
    839841 8j7w:A (2.92) BS01 ZN ? GO:0000139 ... Q8NEW0 37553324
    839842 8j7w:B (2.92) BS01 ZN ? GO:0000139 ... Q8NEW0 37553324
    839843 8j7y:A (3.4) BS01 ZN ? GO:0000139 ... Q8NEW0 37553324
    839844 8j7y:B (3.4) BS01 ZN ? GO:0000139 ... Q8NEW0 37553324
    839845 8j7z:A (2.72) BS01 A86 ? GO:0009535 ... O65890 38071196
    839846 8j7z:A (2.72) BS02 A86 ? GO:0009535 ... O65890 38071196
    839847 8j7z:A (2.72) BS03 A86 ? GO:0009535 ... O65890 38071196
    839848 8j7z:A (2.72) BS04 A86 ? GO:0009535 ... O65890 38071196
    839849 8j7z:A (2.72) BS05 A86 ? GO:0009535 ... O65890 38071196
    839850 8j7z:A (2.72) BS06 A86 ? GO:0009535 ... O65890 38071196
    839851 8j7z:A (2.72) BS07 A86 ? GO:0009535 ... O65890 38071196
    839852 8j7z:A (2.72) BS08 CLA ? GO:0009535 ... O65890 38071196
    839853 8j7z:A (2.72) BS09 CLA ? GO:0009535 ... O65890 38071196
    839854 8j7z:A (2.72) BS10 KC2 ? GO:0009535 ... O65890 38071196
    839855 8j7z:A (2.72) BS11 CLA ? GO:0009535 ... O65890 38071196
    839856 8j7z:A (2.72) BS12 KC2 ? GO:0009535 ... O65890 38071196
    839857 8j7z:A (2.72) BS13 CLA ? GO:0009535 ... O65890 38071196
    839858 8j7z:A (2.72) BS14 CLA ? GO:0009535 ... O65890 38071196
    839859 8j7z:A (2.72) BS15 KC1 ? GO:0009535 ... O65890 38071196
    839860 8j7z:A (2.72) BS16 CLA ? GO:0009535 ... O65890 38071196
    839861 8j7z:A (2.72) BS17 CLA ? GO:0009535 ... O65890 38071196
    839862 8j7z:A (2.72) BS18 CLA ? GO:0009535 ... O65890 38071196
    839863 8j7z:A (2.72) BS19 CLA ? GO:0009535 ... O65890 38071196
    839864 8j7z:B (2.72) BS01 CLA ? GO:0009535 ... O65890 38071196
    839865 8j7z:B (2.72) BS02 A86 ? GO:0009535 ... O65890 38071196
    839866 8j7z:B (2.72) BS03 A86 ? GO:0009535 ... O65890 38071196
    839867 8j7z:B (2.72) BS04 A86 ? GO:0009535 ... O65890 38071196
    839868 8j7z:B (2.72) BS05 A86 ? GO:0009535 ... O65890 38071196
    839869 8j7z:B (2.72) BS06 A86 ? GO:0009535 ... O65890 38071196
    839870 8j7z:B (2.72) BS07 A86 ? GO:0009535 ... O65890 38071196
    839871 8j7z:B (2.72) BS08 A86 ? GO:0009535 ... O65890 38071196
    839872 8j7z:B (2.72) BS09 CLA ? GO:0009535 ... O65890 38071196
    839873 8j7z:B (2.72) BS10 CLA ? GO:0009535 ... O65890 38071196
    839874 8j7z:B (2.72) BS11 KC2 ? GO:0009535 ... O65890 38071196
    839875 8j7z:B (2.72) BS12 CLA ? GO:0009535 ... O65890 38071196
    839876 8j7z:B (2.72) BS13 KC2 ? GO:0009535 ... O65890 38071196
    839877 8j7z:B (2.72) BS14 CLA ? GO:0009535 ... O65890 38071196
    839878 8j7z:B (2.72) BS15 CLA ? GO:0009535 ... O65890 38071196
    839879 8j7z:B (2.72) BS16 KC1 ? GO:0009535 ... O65890 38071196
    839880 8j7z:B (2.72) BS17 CLA ? GO:0009535 ... O65890 38071196
    839881 8j7z:B (2.72) BS18 CLA ? GO:0009535 ... O65890 38071196
    839882 8j7z:B (2.72) BS19 CLA ? GO:0009535 ... O65890 38071196
    839883 8j7z:C (2.72) BS01 CLA ? GO:0009535 ... O65890 38071196
    839884 8j7z:C (2.72) BS02 CLA ? GO:0009535 ... O65890 38071196
    839885 8j7z:C (2.72) BS03 A86 ? GO:0009535 ... O65890 38071196
    839886 8j7z:C (2.72) BS04 A86 ? GO:0009535 ... O65890 38071196
    839887 8j7z:C (2.72) BS05 A86 ? GO:0009535 ... O65890 38071196
    839888 8j7z:C (2.72) BS06 A86 ? GO:0009535 ... O65890 38071196
    839889 8j7z:C (2.72) BS07 A86 ? GO:0009535 ... O65890 38071196
    839890 8j7z:C (2.72) BS08 A86 ? GO:0009535 ... O65890 38071196
    839891 8j7z:C (2.72) BS09 A86 ? GO:0009535 ... O65890 38071196
    839892 8j7z:C (2.72) BS10 CLA ? GO:0009535 ... O65890 38071196
    839893 8j7z:C (2.72) BS11 CLA ? GO:0009535 ... O65890 38071196
    839894 8j7z:C (2.72) BS12 KC2 ? GO:0009535 ... O65890 38071196
    839895 8j7z:C (2.72) BS13 CLA ? GO:0009535 ... O65890 38071196
    839896 8j7z:C (2.72) BS14 KC2 ? GO:0009535 ... O65890 38071196
    839897 8j7z:C (2.72) BS15 CLA ? GO:0009535 ... O65890 38071196
    839898 8j7z:C (2.72) BS16 CLA ? GO:0009535 ... O65890 38071196
    839899 8j7z:C (2.72) BS17 KC1 ? GO:0009535 ... O65890 38071196
    839900 8j7z:C (2.72) BS18 CLA ? GO:0009535 ... O65890 38071196
    839901 8j7z:C (2.72) BS19 CLA ? GO:0009535 ... O65890 38071196
    839902 8j80:B (2.68) BS01 ZN ? GO:0000139 ... Q8NEW0 37553324
    839903 8j81:A (1.35) BS01 UAC 2.3.2.27 GO:0005634 ... Q00987 38756815
    839904 8j83:A (2.4) BS01 MGD 1.17.1.9 GO:0003954 ... C5ATT7 37668215
    839905 8j83:A (2.4) BS02 MGD 1.17.1.9 GO:0003954 ... C5ATT7 37668215
    839906 8j83:A (2.4) BS03 FES 1.17.1.9 GO:0003954 ... C5ATT7 37668215
    839907 8j83:A (2.4) BS04 SF4 1.17.1.9 GO:0003954 ... C5ATT7 37668215
    839908 8j83:A (2.4) BS05 SF4 1.17.1.9 GO:0003954 ... C5ATT7 37668215
    839909 8j83:A (2.4) BS06 SF4 1.17.1.9 GO:0003954 ... C5ATT7 37668215
    839910 8j83:B (2.4) BS01 FMN 1.2.1.2 GO:0008137 ... C5ATT6 37668215
    839911 8j83:B (2.4) BS02 SF4 1.2.1.2 GO:0008137 ... C5ATT6 37668215
    839912 8j83:B (2.4) BS03 FES 1.2.1.2 GO:0008137 ... C5ATT6 37668215
    839913 8j85:A (2.7) BS01 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    839914 8j85:A (2.7) BS02 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    839915 8j85:A (2.7) BS03 97U ? GO:0016787 ... A0A0S1B1B6 37331057
    839916 8j85:B (2.7) BS01 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    839917 8j85:B (2.7) BS02 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    839918 8j85:B (2.7) BS03 97U ? GO:0016787 ... A0A0S1B1B6 37331057
    839919 8j85:C (2.7) BS01 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    839920 8j85:C (2.7) BS02 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    839921 8j85:C (2.7) BS03 97U ? GO:0016787 ... A0A0S1B1B6 37331057
    839922 8j85:D (2.7) BS01 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    839923 8j85:D (2.7) BS02 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    839924 8j85:D (2.7) BS03 97U ? GO:0016787 ... A0A0S1B1B6 37331057
    839925 8j85:E (2.7) BS01 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    839926 8j85:E (2.7) BS02 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    839927 8j85:E (2.7) BS03 97U ? GO:0016787 ... A0A0S1B1B6 37331057
    839928 8j85:F (2.7) BS01 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    839929 8j85:F (2.7) BS02 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    839930 8j85:F (2.7) BS03 97U ? GO:0016787 ... A0A0S1B1B6 37331057
    839931 8j85:G (2.7) BS01 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    839932 8j85:G (2.7) BS02 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    839933 8j85:G (2.7) BS03 97U ? GO:0016787 ... A0A0S1B1B6 37331057
    839934 8j85:H (2.7) BS01 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    839935 8j85:H (2.7) BS02 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    839936 8j85:H (2.7) BS03 97U ? GO:0016787 ... A0A0S1B1B6 37331057
    839937 8j86:A (3.22) BS01 dna 2.7.7.7 GO:0000166 ... A0A7H0DN44 38735603
    839938 8j86:A (3.22) BS02 dna 2.7.7.7 GO:0000166 ... A0A7H0DN44 38735603
    839939 8j86:A (3.22) BS03 CA 2.7.7.7 GO:0000166 ... A0A7H0DN44 38735603
    839940 8j86:B (3.22) BS01 dna 3.2.2.27 GO:0003677 ... M1LL92 38735603
    839941 8j8e:A (2.5) BS01 U5U ? GO:0003677 ... P02768 37321208
    839942 8j8e:I (2.5) BS01 U5U ? GO:0003677 ... P02768 37321208
    839943 8j8f:A (2.98) BS01 dna 2.7.7.7 GO:0000166 ... Q5IXW8 38735603
    839944 8j8f:A (2.98) BS02 dna 2.7.7.7 GO:0000166 ... Q5IXW8 38735603
    839945 8j8f:A (2.98) BS03 DCP 2.7.7.7 GO:0000166 ... Q5IXW8 38735603
    839946 8j8f:A (2.98) BS04 CA 2.7.7.7 GO:0000166 ... Q5IXW8 38735603
    839947 8j8f:A (2.98) BS05 CA 2.7.7.7 GO:0000166 ... Q5IXW8 38735603
    839948 8j8f:A (2.98) BS06 CA 2.7.7.7 GO:0000166 ... Q5IXW8 38735603
    839949 8j8f:B (2.98) BS01 dna 3.2.2.27 GO:0003677 ... Q5IXS4 38735603
    839950 8j8g:A (2.79) BS01 dna 2.7.7.7 GO:0000166 ... Q5IXW8 38735603
    839951 8j8g:A (2.79) BS02 dna 2.7.7.7 GO:0000166 ... Q5IXW8 38735603
    839952 8j8g:A (2.79) BS03 TXJ 2.7.7.7 GO:0000166 ... Q5IXW8 38735603
    839953 8j8g:A (2.79) BS04 CA 2.7.7.7 GO:0000166 ... Q5IXW8 38735603
    839954 8j8g:A (2.79) BS05 CA 2.7.7.7 GO:0000166 ... Q5IXW8 38735603
    839955 8j8g:B (2.79) BS01 dna 3.2.2.27 GO:0003677 ... Q5IXS4 38735603
    839956 8j8h:A (3.4) BS01 rna ? GO:0003676 ... A0A1I7NFD7 37932527
    839957 8j8h:A (3.4) BS02 dna ? GO:0003676 ... A0A1I7NFD7 37932527
    839958 8j8h:B (3.4) BS01 rna ? GO:0007165 ... A0A1I7NFG5 37932527
    839959 8j8h:B (3.4) BS02 dna ? GO:0007165 ... A0A1I7NFG5 37932527
    839960 8j8j:A (2.76) BS01 PRP 2.4.2.45 GO:0000287 ... P9WFR5 38491273
    839961 8j8j:A (2.76) BS02 PGW 2.4.2.45 GO:0000287 ... P9WFR5 38491273
    839962 8j8j:B (2.76) BS01 PRP 2.4.2.45 GO:0000287 ... P9WFR5 38491273
    839963 8j8j:B (2.76) BS02 PGW 2.4.2.45 GO:0000287 ... P9WFR5 38491273
    839964 8j8j:D (2.76) BS01 PRP 2.4.2.45 GO:0000287 ... P9WFR5 38491273
    839965 8j8j:D (2.76) BS02 PGW 2.4.2.45 GO:0000287 ... P9WFR5 38491273
    839966 8j8k:A (3.36) BS01 DSL 2.4.2.45 GO:0000287 ... P9WFR5 38491273
    839967 8j8k:B (3.36) BS01 DSL 2.4.2.45 GO:0000287 ... P9WFR5 38491273
    839968 8j8k:C (3.36) BS01 DSL 2.4.2.45 GO:0000287 ... P9WFR5 38491273
    839969 8j8l:B (3.56) BS01 DAH N/A GO:0002720 ... Q01650 40780412
    839970 8j8m:B (3.58) BS01 TRP N/A GO:0002720 ... Q01650 40780412
    839971 8j8n:A (9.02) BS01 ZN ? GO:0000976 ... P04637 38944084
    839972 8j8n:B (9.02) BS01 ZN ? GO:0000976 ... P04637 38944084
    839973 8j8n:C (9.02) BS01 ZN ? GO:0000976 ... P04637 38944084
    839974 8j8n:D (9.02) BS01 ZN ? GO:0000976 ... P04637 38944084
    839975 8j8o:A (2.24) BS01 1SY ? N/A A0ACD6B863 38103556
    839976 8j8o:B (2.24) BS01 1SY ? N/A A0ACD6B863 38103556
    839977 8j8o:C (2.24) BS01 1SY ? N/A A0ACD6B863 38103556
    839978 8j8o:D (2.24) BS01 1SY ? N/A A0ACD6B863 38103556
    839979 8j8o:E (2.24) BS01 1SY ? N/A A0ACD6B863 38103556
    839980 8j8o:F (2.24) BS01 1SY ? N/A A0ACD6B863 38103556
    839981 8j8r:A (2.9) BS01 peptide ? GO:0000822 ... P32120 38175886
    839982 8j8r:B (2.9) BS01 peptide ? GO:0000822 ... P32120 38175886
    839983 8j8r:C (2.9) BS01 peptide ? GO:0000822 ... P32120 38175886
    839984 8j8r:E (2.9) BS01 peptide N/A N/A N/A 38175886
    839985 8j8t:A (1.81) BS01 CA ? GO:0016020 ... Q9UGM3 N/A
    839986 8j8t:A (1.81) BS02 CA ? GO:0016020 ... Q9UGM3 N/A
    839987 8j8t:A (1.81) BS03 CA ? GO:0016020 ... Q9UGM3 N/A
    839988 8j8t:B (1.81) BS01 CA ? GO:0016020 ... Q9UGM3 N/A
    839989 8j8t:B (1.81) BS02 CA ? GO:0016020 ... Q9UGM3 N/A
    839990 8j8t:B (1.81) BS03 CA ? GO:0016020 ... Q9UGM3 N/A
    839991 8j8v:A (3.22) BS01 peptide ? GO:0000822 ... P32120 38175886
    839992 8j8v:A (3.22) BS02 peptide ? GO:0000822 ... P32120 38175886
    839993 8j8v:F (3.22) BS01 peptide ? GO:0000822 ... P32120 38175886
    839994 8j8v:F (3.22) BS02 peptide ? GO:0000822 ... P32120 38175886
    839995 8j8w:A (1.601) BS01 CO 1.13.11.27 GO:0003868 ... P93836 N/A
    839996 8j8w:A (1.601) BS02 U5D 1.13.11.27 GO:0003868 ... P93836 N/A
    839997 8j8x:A (1.598) BS01 CO 1.13.11.27 GO:0003868 ... P93836 N/A
    839998 8j8x:A (1.598) BS02 U7O 1.13.11.27 GO:0003868 ... P93836 N/A
    839999 8j8z:A (3.4) BS01 peptide ? GO:0001664 ... P29066 38175886
    840000 8j8z:B (3.4) BS01 peptide ? GO:0001664 ... P29066 38175886

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).