SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    840001 8j8z:L (3.4) BS01 peptide N/A N/A N/A 38175886
    840002 8j8z:M (3.4) BS01 peptide N/A N/A N/A 38175886
    840003 8j90:A (4.71) BS01 dna N/A GO:0000786 ... P59226 38992002
    840004 8j90:A (4.71) BS02 dna N/A GO:0000786 ... P59226 38992002
    840005 8j90:B (4.71) BS01 dna N/A GO:0000325 ... P59259 38992002
    840006 8j90:B (4.71) BS02 dna N/A GO:0000325 ... P59259 38992002
    840007 8j90:C (4.71) BS01 dna N/A GO:0000786 ... Q9FJE8 38992002
    840008 8j90:C (4.71) BS02 dna N/A GO:0000786 ... Q9FJE8 38992002
    840009 8j90:D (4.71) BS01 dna N/A GO:0000786 ... O23629 38992002
    840010 8j90:D (4.71) BS02 dna N/A GO:0000786 ... O23629 38992002
    840011 8j90:E (4.71) BS01 dna N/A GO:0000786 ... P59226 38992002
    840012 8j90:E (4.71) BS02 dna N/A GO:0000786 ... P59226 38992002
    840013 8j90:F (4.71) BS01 dna N/A GO:0000325 ... P59259 38992002
    840014 8j90:F (4.71) BS02 dna N/A GO:0000325 ... P59259 38992002
    840015 8j90:K (4.71) BS01 dna N/A GO:0000785 ... Q9XFH4 38992002
    840016 8j90:K (4.71) BS02 dna N/A GO:0000785 ... Q9XFH4 38992002
    840017 8j91:A (2.9) BS01 dna N/A GO:0000786 ... P59226 38992002
    840018 8j91:A (2.9) BS02 dna N/A GO:0000786 ... P59226 38992002
    840019 8j91:B (2.9) BS01 dna N/A GO:0000325 ... P59259 38992002
    840020 8j91:B (2.9) BS02 dna N/A GO:0000325 ... P59259 38992002
    840021 8j91:C (2.9) BS01 dna N/A GO:0000786 ... Q9LHQ5 38992002
    840022 8j91:C (2.9) BS02 dna N/A GO:0000786 ... Q9LHQ5 38992002
    840023 8j91:D (2.9) BS01 dna N/A GO:0000786 ... O23629 38992002
    840024 8j91:D (2.9) BS02 dna N/A GO:0000786 ... O23629 38992002
    840025 8j91:E (2.9) BS01 dna N/A GO:0000786 ... P59226 38992002
    840026 8j91:E (2.9) BS02 dna N/A GO:0000786 ... P59226 38992002
    840027 8j91:F (2.9) BS01 dna N/A GO:0000325 ... P59259 38992002
    840028 8j91:F (2.9) BS02 dna N/A GO:0000325 ... P59259 38992002
    840029 8j91:G (2.9) BS01 dna N/A GO:0000786 ... Q9LHQ5 38992002
    840030 8j91:G (2.9) BS02 dna N/A GO:0000786 ... Q9LHQ5 38992002
    840031 8j91:H (2.9) BS01 dna N/A GO:0000786 ... O23629 38992002
    840032 8j91:H (2.9) BS02 dna N/A GO:0000786 ... O23629 38992002
    840033 8j92:A (2.9) BS01 dna N/A GO:0000786 ... P59226 38992002
    840034 8j92:A (2.9) BS02 dna N/A GO:0000786 ... P59226 38992002
    840035 8j92:B (2.9) BS01 dna N/A GO:0000325 ... P59259 38992002
    840036 8j92:B (2.9) BS02 dna N/A GO:0000325 ... P59259 38992002
    840037 8j92:C (2.9) BS01 dna N/A GO:0000786 ... Q9FJE8 38992002
    840038 8j92:C (2.9) BS02 dna N/A GO:0000786 ... Q9FJE8 38992002
    840039 8j92:D (2.9) BS01 dna N/A GO:0000786 ... O23629 38992002
    840040 8j92:D (2.9) BS02 dna N/A GO:0000786 ... O23629 38992002
    840041 8j92:E (2.9) BS01 dna N/A GO:0000786 ... P59226 38992002
    840042 8j92:E (2.9) BS02 dna N/A GO:0000786 ... P59226 38992002
    840043 8j92:F (2.9) BS01 dna N/A GO:0000325 ... P59259 38992002
    840044 8j92:F (2.9) BS02 dna N/A GO:0000325 ... P59259 38992002
    840045 8j92:G (2.9) BS01 dna N/A GO:0000786 ... Q9FJE8 38992002
    840046 8j92:G (2.9) BS02 dna N/A GO:0000786 ... Q9FJE8 38992002
    840047 8j92:H (2.9) BS01 dna N/A GO:0000786 ... O23629 38992002
    840048 8j92:H (2.9) BS02 dna N/A GO:0000786 ... O23629 38992002
    840049 8j97:A (3.2) BS01 peptide ? GO:0007165 ... P17870 38175886
    840050 8j98:A (2.9) BS01 9UY N/A GO:0015979 ... N/A N/A
    840051 8j99:B (2.87) BS01 TW3 6.4.1.4 GO:0004485 ... Q9HCC0 N/A
    840052 8j99:D (2.87) BS01 TW3 6.4.1.4 GO:0004485 ... Q9HCC0 N/A
    840053 8j99:D (2.87) BS02 TW3 6.4.1.4 GO:0004485 ... Q9HCC0 N/A
    840054 8j99:G (2.87) BS01 TW3 6.4.1.4 GO:0004485 ... Q9HCC0 N/A
    840055 8j99:H (2.87) BS01 TW3 6.4.1.4 GO:0004485 ... Q9HCC0 N/A
    840056 8j99:J (2.87) BS01 TW3 6.4.1.4 GO:0004485 ... Q9HCC0 N/A
    840057 8j99:J (2.87) BS02 TW3 6.4.1.4 GO:0004485 ... Q9HCC0 N/A
    840058 8j99:L (2.87) BS01 TW3 6.4.1.4 GO:0004485 ... Q9HCC0 N/A
    840059 8j9c:A (2.1) BS01 ZN ? N/A B0RY21 38646733
    840060 8j9c:B (2.1) BS01 ZN ? N/A B0RY21 38646733
    840061 8j9c:C (2.1) BS01 ZN ? N/A B0RY21 38646733
    840062 8j9c:D (2.1) BS01 ZN ? N/A B0RY21 38646733
    840063 8j9d:A (1.9) BS01 ZN ? N/A B0RY21 38646733
    840064 8j9d:A (1.9) BS02 BES ? N/A B0RY21 38646733
    840065 8j9d:B (1.9) BS01 ZN ? N/A B0RY21 38646733
    840066 8j9d:B (1.9) BS02 BES ? N/A B0RY21 38646733
    840067 8j9d:C (1.9) BS01 ZN ? N/A B0RY21 38646733
    840068 8j9d:C (1.9) BS02 BES ? N/A B0RY21 38646733
    840069 8j9d:D (1.9) BS01 ZN ? N/A B0RY21 38646733
    840070 8j9d:D (1.9) BS02 BES ? N/A B0RY21 38646733
    840071 8j9f:A (2.85) BS01 GOL 3.2.1.21 GO:0004553 ... D6RVX0 37384427
    840072 8j9f:B (2.85) BS01 GOL 3.2.1.21 GO:0004553 ... D6RVX0 37384427
    840073 8j9f:D (2.85) BS01 GOL 3.2.1.21 GO:0004553 ... D6RVX0 37384427
    840074 8j9g:A (3.5) BS01 rna ? GO:0003676 ... A0A1I7NFD7 37932527
    840075 8j9g:A (3.5) BS02 dna ? GO:0003676 ... A0A1I7NFD7 37932527
    840076 8j9g:A (3.5) BS03 MG ? GO:0003676 ... A0A1I7NFD7 37932527
    840077 8j9g:B (3.5) BS01 rna ? GO:0007165 ... A0A1I7NFG5 37932527
    840078 8j9g:B (3.5) BS02 dna ? GO:0007165 ... A0A1I7NFG5 37932527
    840079 8j9h:1A (3.11) BS01 FES N/A GO:0008137 ... N/A 38388527
    840080 8j9h:1A (3.11) BS02 SF4 N/A GO:0008137 ... N/A 38388527
    840081 8j9h:1A (3.11) BS03 SF4 N/A GO:0008137 ... N/A 38388527
    840082 8j9h:A1 (3.11) BS01 peptide N/A N/A N/A 38388527
    840083 8j9h:A6 (3.11) BS01 ZMP N/A N/A N/A 38388527
    840084 8j9h:A9 (3.11) BS01 NDP N/A N/A N/A 38388527
    840085 8j9h:AB (3.11) BS01 ZMP N/A GO:0006633 ... N/A 38388527
    840086 8j9h:AC (3.11) BS01 ZMP N/A GO:0006633 ... N/A 38388527
    840087 8j9h:B5 (3.11) BS01 U10 N/A N/A N/A 38388527
    840088 8j9h:B7 (3.11) BS01 peptide N/A GO:0005739 ... N/A 38388527
    840089 8j9h:B9 (3.11) BS01 ZMP N/A N/A N/A 38388527
    840090 8j9h:E6 (3.11) BS01 peptide N/A N/A N/A 38388527
    840091 8j9h:E7 (3.11) BS01 ZN N/A N/A N/A 38388527
    840092 8j9h:N4 (3.11) BS01 U10 7.1.1.2 GO:0003954 ... A0A0S2YRV6 38388527
    840093 8j9h:S2 (3.11) BS01 SF4 N/A GO:0016651 ... N/A 38388527
    840094 8j9h:S6 (3.11) BS01 ZN N/A N/A N/A 38388527
    840095 8j9h:S7 (3.11) BS01 SF4 N/A GO:0008137 ... N/A 38388527
    840096 8j9h:S8 (3.11) BS01 SF4 N/A GO:0016020 ... N/A 38388527
    840097 8j9h:S8 (3.11) BS02 SF4 N/A GO:0016020 ... N/A 38388527
    840098 8j9h:V1 (3.11) BS01 FMN N/A GO:0010181 ... N/A 38388527
    840099 8j9h:V1 (3.11) BS02 SF4 N/A GO:0010181 ... N/A 38388527
    840100 8j9h:V2 (3.11) BS01 FES N/A GO:0016491 ... N/A 38388527
    840101 8j9i:1A (2.87) BS01 FES N/A GO:0008137 ... N/A 38388527
    840102 8j9i:1A (2.87) BS02 SF4 N/A GO:0008137 ... N/A 38388527
    840103 8j9i:1A (2.87) BS03 SF4 N/A GO:0008137 ... N/A 38388527
    840104 8j9i:A6 (2.87) BS01 ZMP N/A N/A N/A 38388527
    840105 8j9i:A9 (2.87) BS01 NDP N/A N/A N/A 38388527
    840106 8j9i:AB (2.87) BS01 ZMP N/A GO:0006633 ... N/A 38388527
    840107 8j9i:AC (2.87) BS01 ZMP N/A GO:0006633 ... N/A 38388527
    840108 8j9i:B5 (2.87) BS01 U10 N/A N/A N/A 38388527
    840109 8j9i:B7 (2.87) BS01 peptide N/A GO:0005739 ... N/A 38388527
    840110 8j9i:B9 (2.87) BS01 ZMP N/A N/A N/A 38388527
    840111 8j9i:E6 (2.87) BS01 peptide N/A N/A N/A 38388527
    840112 8j9i:E7 (2.87) BS01 ZN N/A N/A N/A 38388527
    840113 8j9i:N4 (2.87) BS01 U10 7.1.1.2 GO:0003954 ... A0A0S2YRV6 38388527
    840114 8j9i:S2 (2.87) BS01 SF4 N/A GO:0016651 ... N/A 38388527
    840115 8j9i:S6 (2.87) BS01 ZN N/A N/A N/A 38388527
    840116 8j9i:S7 (2.87) BS01 SF4 N/A GO:0008137 ... N/A 38388527
    840117 8j9i:S8 (2.87) BS01 SF4 N/A GO:0016020 ... N/A 38388527
    840118 8j9i:S8 (2.87) BS02 SF4 N/A GO:0016020 ... N/A 38388527
    840119 8j9i:V1 (2.87) BS01 FMN N/A GO:0010181 ... N/A 38388527
    840120 8j9i:V1 (2.87) BS02 SF4 N/A GO:0010181 ... N/A 38388527
    840121 8j9i:V1 (2.87) BS03 NAI N/A GO:0010181 ... N/A 38388527
    840122 8j9i:V2 (2.87) BS01 FES N/A GO:0016491 ... N/A 38388527
    840123 8j9j:1A (3.03) BS01 FES N/A GO:0008137 ... N/A 38388527
    840124 8j9j:1A (3.03) BS02 SF4 N/A GO:0008137 ... N/A 38388527
    840125 8j9j:1A (3.03) BS03 SF4 N/A GO:0008137 ... N/A 38388527
    840126 8j9j:A1 (3.03) BS01 peptide N/A N/A N/A 38388527
    840127 8j9j:A6 (3.03) BS01 ZMP N/A N/A N/A 38388527
    840128 8j9j:A9 (3.03) BS01 NDP N/A N/A N/A 38388527
    840129 8j9j:AB (3.03) BS01 ZMP N/A GO:0006633 ... N/A 38388527
    840130 8j9j:AC (3.03) BS01 ZMP N/A GO:0006633 ... N/A 38388527
    840131 8j9j:B5 (3.03) BS01 U10 N/A N/A N/A 38388527
    840132 8j9j:B7 (3.03) BS01 peptide N/A GO:0005739 ... N/A 38388527
    840133 8j9j:B9 (3.03) BS01 ZMP N/A N/A N/A 38388527
    840134 8j9j:E6 (3.03) BS01 peptide N/A N/A N/A 38388527
    840135 8j9j:E7 (3.03) BS01 ZN N/A N/A N/A 38388527
    840136 8j9j:N4 (3.03) BS01 U10 7.1.1.2 GO:0003954 ... A0A0S2YRV6 38388527
    840137 8j9j:S2 (3.03) BS01 SF4 N/A GO:0016651 ... N/A 38388527
    840138 8j9j:S6 (3.03) BS01 ZN N/A N/A N/A 38388527
    840139 8j9j:S7 (3.03) BS01 SF4 N/A GO:0008137 ... N/A 38388527
    840140 8j9j:S8 (3.03) BS01 SF4 N/A GO:0016020 ... N/A 38388527
    840141 8j9j:S8 (3.03) BS02 SF4 N/A GO:0016020 ... N/A 38388527
    840142 8j9j:V1 (3.03) BS01 FMN N/A GO:0010181 ... N/A 38388527
    840143 8j9j:V1 (3.03) BS02 SF4 N/A GO:0010181 ... N/A 38388527
    840144 8j9j:V1 (3.03) BS03 NAI N/A GO:0010181 ... N/A 38388527
    840145 8j9j:V2 (3.03) BS01 FES N/A GO:0016491 ... N/A 38388527
    840146 8j9l:A (2.5) BS01 FE 1.16.3.1 GO:0004322 ... P02794 37870198
    840147 8j9l:B (2.5) BS01 FE 1.16.3.1 GO:0004322 ... P02794 37870198
    840148 8j9l:C (2.5) BS01 FE 1.16.3.1 GO:0004322 ... P02794 37870198
    840149 8j9l:D (2.5) BS01 FE 1.16.3.1 GO:0004322 ... P02794 37870198
    840150 8j9l:E (2.5) BS01 FE 1.16.3.1 GO:0004322 ... P02794 37870198
    840151 8j9l:F (2.5) BS01 FE 1.16.3.1 GO:0004322 ... P02794 37870198
    840152 8j9l:G (2.5) BS01 FE 1.16.3.1 GO:0004322 ... P02794 37870198
    840153 8j9l:H (2.5) BS01 FE 1.16.3.1 GO:0004322 ... P02794 37870198
    840154 8j9l:I (2.5) BS01 FE 1.16.3.1 GO:0004322 ... P02794 37870198
    840155 8j9l:J (2.5) BS01 FE 1.16.3.1 GO:0004322 ... P02794 37870198
    840156 8j9l:K (2.5) BS01 FE 1.16.3.1 GO:0004322 ... P02794 37870198
    840157 8j9l:L (2.5) BS01 FE 1.16.3.1 GO:0004322 ... P02794 37870198
    840158 8j9m:A (2.9) BS01 FE 1.16.3.1 GO:0004322 ... P02794 37870198
    840159 8j9m:A (2.9) BS02 FE 1.16.3.1 GO:0004322 ... P02794 37870198
    840160 8j9m:B (2.9) BS01 FE 1.16.3.1 GO:0004322 ... P02794 37870198
    840161 8j9m:B (2.9) BS02 FE 1.16.3.1 GO:0004322 ... P02794 37870198
    840162 8j9m:C (2.9) BS01 FE 1.16.3.1 GO:0004322 ... P02794 37870198
    840163 8j9m:C (2.9) BS02 FE 1.16.3.1 GO:0004322 ... P02794 37870198
    840164 8j9p:A (3.4) BS01 rna ? GO:0003676 ... A0A1I7NFD7 37932527
    840165 8j9p:A (3.4) BS02 dna ? GO:0003676 ... A0A1I7NFD7 37932527
    840166 8j9p:B (3.4) BS01 rna ? GO:0007165 ... A0A1I7NFG5 37932527
    840167 8j9p:B (3.4) BS02 dna ? GO:0007165 ... A0A1I7NFG5 37932527
    840168 8j9p:C (3.4) BS01 rna ? GO:0003676 ... A0A1I7NFD7 37932527
    840169 8j9p:C (3.4) BS02 dna ? GO:0003676 ... A0A1I7NFD7 37932527
    840170 8j9p:D (3.4) BS01 rna ? GO:0007165 ... A0A1I7NFG5 37932527
    840171 8j9p:D (3.4) BS02 dna ? GO:0007165 ... A0A1I7NFG5 37932527
    840172 8j9q:A (2.18) BS01 ZN 2.3.2.27 GO:0008270 ... Q5T4S7 38030679
    840173 8j9q:A (2.18) BS02 ZN 2.3.2.27 GO:0008270 ... Q5T4S7 38030679
    840174 8j9q:A (2.18) BS03 ZN 2.3.2.27 GO:0008270 ... Q5T4S7 38030679
    840175 8j9q:B (2.18) BS01 ZN 2.3.2.27 GO:0008270 ... Q5T4S7 38030679
    840176 8j9q:B (2.18) BS02 ZN 2.3.2.27 GO:0008270 ... Q5T4S7 38030679
    840177 8j9q:B (2.18) BS03 ZN 2.3.2.27 GO:0008270 ... Q5T4S7 38030679
    840178 8j9q:C (2.18) BS01 ZN 2.3.2.27 GO:0008270 ... Q5T4S7 38030679
    840179 8j9q:C (2.18) BS02 ZN 2.3.2.27 GO:0008270 ... Q5T4S7 38030679
    840180 8j9q:C (2.18) BS03 ZN 2.3.2.27 GO:0008270 ... Q5T4S7 38030679
    840181 8j9r:A (1.65) BS01 ZN 2.3.2.27 GO:0008270 ... Q5T4S7 38030679
    840182 8j9r:A (1.65) BS02 ZN 2.3.2.27 GO:0008270 ... Q5T4S7 38030679
    840183 8j9r:A (1.65) BS03 ZN 2.3.2.27 GO:0008270 ... Q5T4S7 38030679
    840184 8j9v:A (2.71) BS01 dna 5.6.2.2 GO:0000166 ... Q00942 38418525
    840185 8j9v:A (2.71) BS02 dna 5.6.2.2 GO:0000166 ... Q00942 38418525
    840186 8j9v:A (2.71) BS03 dna 5.6.2.2 GO:0000166 ... Q00942 38418525
    840187 8j9v:A (2.71) BS04 MG 5.6.2.2 GO:0000166 ... Q00942 38418525
    840188 8j9v:A (2.71) BS05 EVP 5.6.2.2 GO:0000166 ... Q00942 38418525
    840189 8j9v:B (2.71) BS01 dna 5.6.2.2 GO:0000166 ... Q00942 38418525
    840190 8j9v:B (2.71) BS02 dna 5.6.2.2 GO:0000166 ... Q00942 38418525
    840191 8j9v:B (2.71) BS03 dna 5.6.2.2 GO:0000166 ... Q00942 38418525
    840192 8j9v:B (2.71) BS04 EVP 5.6.2.2 GO:0000166 ... Q00942 38418525
    840193 8j9w:A (2.76) BS01 dna 5.6.2.2 GO:0000166 ... Q00942 38418525
    840194 8j9w:A (2.76) BS02 dna 5.6.2.2 GO:0000166 ... Q00942 38418525
    840195 8j9w:A (2.76) BS03 dna 5.6.2.2 GO:0000166 ... Q00942 38418525
    840196 8j9w:A (2.76) BS04 EVP 5.6.2.2 GO:0000166 ... Q00942 38418525
    840197 8j9w:B (2.76) BS01 dna 5.6.2.2 GO:0000166 ... Q00942 38418525
    840198 8j9w:B (2.76) BS02 dna 5.6.2.2 GO:0000166 ... Q00942 38418525
    840199 8j9w:B (2.76) BS03 dna 5.6.2.2 GO:0000166 ... Q00942 38418525
    840200 8j9w:B (2.76) BS04 EVP 5.6.2.2 GO:0000166 ... Q00942 38418525

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).