SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    840401 8jxc:A (3.7) BS03 CA N/A GO:0005509 ... P98158 38771880
    840402 8jxc:A (3.7) BS04 CA N/A GO:0005509 ... P98158 38771880
    840403 8jxc:A (3.7) BS05 CA N/A GO:0005509 ... P98158 38771880
    840404 8jxc:A (3.7) BS06 CA N/A GO:0005509 ... P98158 38771880
    840405 8jxc:A (3.7) BS07 CA N/A GO:0005509 ... P98158 38771880
    840406 8jxc:A (3.7) BS08 CA N/A GO:0005509 ... P98158 38771880
    840407 8jxc:A (3.7) BS09 CA N/A GO:0005509 ... P98158 38771880
    840408 8jxc:A (3.7) BS10 CA N/A GO:0005509 ... P98158 38771880
    840409 8jxc:A (3.7) BS11 CA N/A GO:0005509 ... P98158 38771880
    840410 8jxc:A (3.7) BS12 CA N/A GO:0005509 ... P98158 38771880
    840411 8jxc:A (3.7) BS13 CA N/A GO:0005509 ... P98158 38771880
    840412 8jxc:A (3.7) BS14 CA N/A GO:0005509 ... P98158 38771880
    840413 8jxc:A (3.7) BS15 CA N/A GO:0005509 ... P98158 38771880
    840414 8jxc:A (3.7) BS16 CA N/A GO:0005509 ... P98158 38771880
    840415 8jxc:A (3.7) BS17 CA N/A GO:0005509 ... P98158 38771880
    840416 8jxc:A (3.7) BS18 CA N/A GO:0005509 ... P98158 38771880
    840417 8jxd:A (3.3) BS01 CA N/A GO:0005509 ... P98158 38771880
    840418 8jxd:A (3.3) BS02 CA N/A GO:0005509 ... P98158 38771880
    840419 8jxd:B (3.3) BS01 CA N/A GO:0005509 ... P98158 38771880
    840420 8jxd:B (3.3) BS02 CA N/A GO:0005509 ... P98158 38771880
    840421 8jxd:B (3.3) BS03 CA N/A GO:0005509 ... P98158 38771880
    840422 8jxd:B (3.3) BS04 CA N/A GO:0005509 ... P98158 38771880
    840423 8jxe:A (3.2) BS01 peptide N/A GO:0005509 ... P98158 38771880
    840424 8jxe:A (3.2) BS02 peptide N/A GO:0005509 ... P98158 38771880
    840425 8jxe:A (3.2) BS03 peptide N/A GO:0005509 ... P98158 38771880
    840426 8jxe:A (3.2) BS04 CA N/A GO:0005509 ... P98158 38771880
    840427 8jxe:A (3.2) BS05 CA N/A GO:0005509 ... P98158 38771880
    840428 8jxe:A (3.2) BS06 CA N/A GO:0005509 ... P98158 38771880
    840429 8jxe:A (3.2) BS07 CA N/A GO:0005509 ... P98158 38771880
    840430 8jxe:A (3.2) BS08 CA N/A GO:0005509 ... P98158 38771880
    840431 8jxe:A (3.2) BS09 CA N/A GO:0005509 ... P98158 38771880
    840432 8jxe:B (3.2) BS01 peptide N/A GO:0005509 ... P98158 38771880
    840433 8jxe:B (3.2) BS02 peptide N/A GO:0005509 ... P98158 38771880
    840434 8jxe:B (3.2) BS03 peptide N/A GO:0005509 ... P98158 38771880
    840435 8jxe:B (3.2) BS04 peptide N/A GO:0005509 ... P98158 38771880
    840436 8jxe:B (3.2) BS05 CA N/A GO:0005509 ... P98158 38771880
    840437 8jxe:B (3.2) BS06 CA N/A GO:0005509 ... P98158 38771880
    840438 8jxe:B (3.2) BS07 CA N/A GO:0005509 ... P98158 38771880
    840439 8jxe:B (3.2) BS08 CA N/A GO:0005509 ... P98158 38771880
    840440 8jxe:B (3.2) BS09 CA N/A GO:0005509 ... P98158 38771880
    840441 8jxe:B (3.2) BS10 CA N/A GO:0005509 ... P98158 38771880
    840442 8jxf:B (3.6) BS01 peptide N/A GO:0005509 ... P98158 38771880
    840443 8jxf:B (3.6) BS02 CA N/A GO:0005509 ... P98158 38771880
    840444 8jxf:B (3.6) BS03 CA N/A GO:0005509 ... P98158 38771880
    840445 8jxf:B (3.6) BS04 CA N/A GO:0005509 ... P98158 38771880
    840446 8jxf:B (3.6) BS05 CA N/A GO:0005509 ... P98158 38771880
    840447 8jxf:B (3.6) BS06 CA N/A GO:0005509 ... P98158 38771880
    840448 8jxf:B (3.6) BS07 CA N/A GO:0005509 ... P98158 38771880
    840449 8jxf:B (3.6) BS08 CA N/A GO:0005509 ... P98158 38771880
    840450 8jxf:B (3.6) BS09 CA N/A GO:0005509 ... P98158 38771880
    840451 8jxf:B (3.6) BS10 CA N/A GO:0005509 ... P98158 38771880
    840452 8jxf:B (3.6) BS11 CA N/A GO:0005509 ... P98158 38771880
    840453 8jxf:B (3.6) BS12 CA N/A GO:0005509 ... P98158 38771880
    840454 8jxf:B (3.6) BS13 CA N/A GO:0005509 ... P98158 38771880
    840455 8jxf:B (3.6) BS14 CA N/A GO:0005509 ... P98158 38771880
    840456 8jxf:B (3.6) BS15 CA N/A GO:0005509 ... P98158 38771880
    840457 8jxf:B (3.6) BS16 CA N/A GO:0005509 ... P98158 38771880
    840458 8jxf:B (3.6) BS17 CA N/A GO:0005509 ... P98158 38771880
    840459 8jxf:B (3.6) BS18 CA N/A GO:0005509 ... P98158 38771880
    840460 8jxf:B (3.6) BS19 CA N/A GO:0005509 ... P98158 38771880
    840461 8jxf:B (3.6) BS20 CA N/A GO:0005509 ... P98158 38771880
    840462 8jxf:B (3.6) BS21 CA N/A GO:0005509 ... P98158 38771880
    840463 8jxg:A (3.2) BS01 peptide N/A GO:0005509 ... P98158 38771880
    840464 8jxg:A (3.2) BS02 CA N/A GO:0005509 ... P98158 38771880
    840465 8jxg:A (3.2) BS03 CA N/A GO:0005509 ... P98158 38771880
    840466 8jxg:A (3.2) BS04 CA N/A GO:0005509 ... P98158 38771880
    840467 8jxg:A (3.2) BS05 CA N/A GO:0005509 ... P98158 38771880
    840468 8jxg:A (3.2) BS06 CA N/A GO:0005509 ... P98158 38771880
    840469 8jxg:A (3.2) BS07 CA N/A GO:0005509 ... P98158 38771880
    840470 8jxg:A (3.2) BS08 CA N/A GO:0005509 ... P98158 38771880
    840471 8jxg:A (3.2) BS09 CA N/A GO:0005509 ... P98158 38771880
    840472 8jxg:A (3.2) BS10 CA N/A GO:0005509 ... P98158 38771880
    840473 8jxg:A (3.2) BS11 CA N/A GO:0005509 ... P98158 38771880
    840474 8jxg:A (3.2) BS12 CA N/A GO:0005509 ... P98158 38771880
    840475 8jxg:A (3.2) BS13 CA N/A GO:0005509 ... P98158 38771880
    840476 8jxg:A (3.2) BS14 CA N/A GO:0005509 ... P98158 38771880
    840477 8jxg:A (3.2) BS15 CA N/A GO:0005509 ... P98158 38771880
    840478 8jxg:A (3.2) BS16 CA N/A GO:0005509 ... P98158 38771880
    840479 8jxg:A (3.2) BS17 CA N/A GO:0005509 ... P98158 38771880
    840480 8jxg:A (3.2) BS18 CA N/A GO:0005509 ... P98158 38771880
    840481 8jxg:A (3.2) BS19 CA N/A GO:0005509 ... P98158 38771880
    840482 8jxg:A (3.2) BS20 CA N/A GO:0005509 ... P98158 38771880
    840483 8jxg:A (3.2) BS21 CA N/A GO:0005509 ... P98158 38771880
    840484 8jxg:A (3.2) BS22 CA N/A GO:0005509 ... P98158 38771880
    840485 8jxh:A (3.5) BS01 CA N/A GO:0005509 ... P98158 38771880
    840486 8jxh:A (3.5) BS02 CA N/A GO:0005509 ... P98158 38771880
    840487 8jxh:A (3.5) BS03 CA N/A GO:0005509 ... P98158 38771880
    840488 8jxh:A (3.5) BS04 CA N/A GO:0005509 ... P98158 38771880
    840489 8jxh:B (3.5) BS01 peptide N/A GO:0005509 ... P98158 38771880
    840490 8jxh:B (3.5) BS02 peptide N/A GO:0005509 ... P98158 38771880
    840491 8jxh:B (3.5) BS03 CA N/A GO:0005509 ... P98158 38771880
    840492 8jxh:B (3.5) BS04 CA N/A GO:0005509 ... P98158 38771880
    840493 8jxh:B (3.5) BS05 CA N/A GO:0005509 ... P98158 38771880
    840494 8jxh:B (3.5) BS06 CA N/A GO:0005509 ... P98158 38771880
    840495 8jxh:B (3.5) BS07 CA N/A GO:0005509 ... P98158 38771880
    840496 8jxh:B (3.5) BS08 CA N/A GO:0005509 ... P98158 38771880
    840497 8jxh:B (3.5) BS09 CA N/A GO:0005509 ... P98158 38771880
    840498 8jxh:B (3.5) BS10 CA N/A GO:0005509 ... P98158 38771880
    840499 8jxh:B (3.5) BS11 CA N/A GO:0005509 ... P98158 38771880
    840500 8jxh:B (3.5) BS12 CA N/A GO:0005509 ... P98158 38771880
    840501 8jxh:B (3.5) BS13 CA N/A GO:0005509 ... P98158 38771880
    840502 8jxh:B (3.5) BS14 CA N/A GO:0005509 ... P98158 38771880
    840503 8jxi:A (3.4) BS01 peptide N/A GO:0005509 ... P98158 38771880
    840504 8jxi:A (3.4) BS02 peptide N/A GO:0005509 ... P98158 38771880
    840505 8jxi:A (3.4) BS03 CA N/A GO:0005509 ... P98158 38771880
    840506 8jxi:A (3.4) BS04 CA N/A GO:0005509 ... P98158 38771880
    840507 8jxi:A (3.4) BS05 CA N/A GO:0005509 ... P98158 38771880
    840508 8jxi:A (3.4) BS06 CA N/A GO:0005509 ... P98158 38771880
    840509 8jxi:A (3.4) BS07 CA N/A GO:0005509 ... P98158 38771880
    840510 8jxi:A (3.4) BS08 CA N/A GO:0005509 ... P98158 38771880
    840511 8jxi:A (3.4) BS09 CA N/A GO:0005509 ... P98158 38771880
    840512 8jxi:A (3.4) BS10 CA N/A GO:0005509 ... P98158 38771880
    840513 8jxi:A (3.4) BS11 CA N/A GO:0005509 ... P98158 38771880
    840514 8jxi:A (3.4) BS12 CA N/A GO:0005509 ... P98158 38771880
    840515 8jxi:A (3.4) BS13 CA N/A GO:0005509 ... P98158 38771880
    840516 8jxi:A (3.4) BS14 CA N/A GO:0005509 ... P98158 38771880
    840517 8jxi:B (3.4) BS01 CA N/A GO:0005509 ... P98158 38771880
    840518 8jxi:B (3.4) BS02 CA N/A GO:0005509 ... P98158 38771880
    840519 8jxi:B (3.4) BS03 CA N/A GO:0005509 ... P98158 38771880
    840520 8jxi:B (3.4) BS04 CA N/A GO:0005509 ... P98158 38771880
    840521 8jxj:A (3.9) BS01 MAN N/A GO:0005509 ... P98158 38771880
    840522 8jxj:A (3.9) BS02 CA N/A GO:0005509 ... P98158 38771880
    840523 8jxj:A (3.9) BS03 CA N/A GO:0005509 ... P98158 38771880
    840524 8jxj:A (3.9) BS04 CA N/A GO:0005509 ... P98158 38771880
    840525 8jxj:A (3.9) BS05 CA N/A GO:0005509 ... P98158 38771880
    840526 8jxj:B (3.9) BS01 CA N/A GO:0005509 ... P98158 38771880
    840527 8jxj:B (3.9) BS02 CA N/A GO:0005509 ... P98158 38771880
    840528 8jxj:B (3.9) BS03 CA N/A GO:0005509 ... P98158 38771880
    840529 8jxj:B (3.9) BS04 CA N/A GO:0005509 ... P98158 38771880
    840530 8jxl:A (2.98) BS01 TW3 N/A GO:0004485 ... Q9HCC0 N/A
    840531 8jxl:A (2.98) BS02 TW3 N/A GO:0004485 ... Q9HCC0 N/A
    840532 8jxl:B (2.98) BS01 TW3 N/A GO:0004485 ... Q9HCC0 N/A
    840533 8jxl:B (2.98) BS02 TW3 N/A GO:0004485 ... Q9HCC0 N/A
    840534 8jxl:D (2.98) BS01 TW3 N/A GO:0004485 ... Q9HCC0 N/A
    840535 8jxl:D (2.98) BS02 TW3 N/A GO:0004485 ... Q9HCC0 N/A
    840536 8jxl:G (2.98) BS01 TW3 N/A GO:0004485 ... Q9HCC0 N/A
    840537 8jxl:G (2.98) BS02 TW3 N/A GO:0004485 ... Q9HCC0 N/A
    840538 8jxl:I (2.98) BS01 TW3 N/A GO:0004485 ... Q9HCC0 N/A
    840539 8jxl:I (2.98) BS02 TW3 N/A GO:0004485 ... Q9HCC0 N/A
    840540 8jxl:K (2.98) BS01 TW3 N/A GO:0004485 ... Q9HCC0 N/A
    840541 8jxl:K (2.98) BS02 TW3 N/A GO:0004485 ... Q9HCC0 N/A
    840542 8jxm:A (3.49) BS01 TW3 N/A GO:0004485 ... Q9HCC0 39223421
    840543 8jxm:C (3.49) BS01 TW3 N/A GO:0004485 ... Q9HCC0 39223421
    840544 8jxm:C (3.49) BS02 BTI N/A GO:0004485 ... Q9HCC0 39223421
    840545 8jxm:C (3.49) BS03 TW3 N/A GO:0004485 ... Q9HCC0 39223421
    840546 8jxm:E (3.49) BS01 TW3 N/A GO:0004485 ... Q9HCC0 39223421
    840547 8jxm:H (3.49) BS01 TW3 N/A GO:0004485 ... Q9HCC0 39223421
    840548 8jxm:H (3.49) BS02 BTI N/A GO:0004485 ... Q9HCC0 39223421
    840549 8jxm:H (3.49) BS03 TW3 N/A GO:0004485 ... Q9HCC0 39223421
    840550 8jxm:J (3.49) BS01 TW3 N/A GO:0004485 ... Q9HCC0 39223421
    840551 8jxm:K (3.49) BS01 TW3 N/A GO:0004485 ... Q9HCC0 39223421
    840552 8jxn:A (3.2) BS01 TW3 N/A GO:0004485 ... Q9HCC0 39223421
    840553 8jxn:A (3.2) BS02 TW3 N/A GO:0004485 ... Q9HCC0 39223421
    840554 8jxn:B (3.2) BS01 BTI N/A GO:0004485 ... Q9HCC0 39223421
    840555 8jxn:B (3.2) BS02 TW3 N/A GO:0004485 ... Q9HCC0 39223421
    840556 8jxn:B (3.2) BS03 TW3 N/A GO:0004485 ... Q9HCC0 39223421
    840557 8jxn:D (3.2) BS01 BTI N/A GO:0004485 ... Q9HCC0 39223421
    840558 8jxn:D (3.2) BS02 TW3 N/A GO:0004485 ... Q9HCC0 39223421
    840559 8jxn:G (3.2) BS01 BTI N/A GO:0004485 ... Q9HCC0 39223421
    840560 8jxn:G (3.2) BS02 TW3 N/A GO:0004485 ... Q9HCC0 39223421
    840561 8jxn:G (3.2) BS03 TW3 N/A GO:0004485 ... Q9HCC0 39223421
    840562 8jxn:I (3.2) BS01 TW3 N/A GO:0004485 ... Q9HCC0 39223421
    840563 8jxn:I (3.2) BS02 TW3 N/A GO:0004485 ... Q9HCC0 39223421
    840564 8jxn:I (3.2) BS03 BTI N/A GO:0004485 ... Q9HCC0 39223421
    840565 8jxn:J (3.2) BS01 BTI N/A GO:0004075 ... Q96RQ3 39223421
    840566 8jxn:K (3.2) BS01 TW3 N/A GO:0004485 ... Q9HCC0 39223421
    840567 8jxn:K (3.2) BS02 TW3 N/A GO:0004485 ... Q9HCC0 39223421
    840568 8jxo:A (2.7) BS01 RET N/A GO:0016020 ... N/A N/A
    840569 8jxo:D (2.7) BS01 RET N/A GO:0016020 ... N/A N/A
    840570 8jxo:E (2.7) BS01 RET N/A GO:0016020 ... N/A N/A
    840571 8jxp:A (2.7) BS01 RET N/A GO:0016020 ... N/A N/A
    840572 8jxp:B (2.7) BS01 RET N/A GO:0016020 ... N/A N/A
    840573 8jxp:C (2.7) BS01 RET N/A GO:0016020 ... N/A N/A
    840574 8jxq:A (3.32) BS01 CLR 7.6.2.-
    7.6.2.2
    7.6.2.3
    GO:0005515 ... Q92887 38316776
    840575 8jxq:A (3.32) BS02 FEI 7.6.2.-
    7.6.2.2
    7.6.2.3
    GO:0005515 ... Q92887 38316776
    840576 8jxr:A (3.57) BS01 7LD N/A GO:0004930 ... P21728 39094559
    840577 8jxr:C (3.57) BS01 GLC N/A GO:0005515 ... P06654
    P0A015
    P0AEX9
    39094559
    840578 8jxr:C (3.57) BS02 GLC N/A GO:0005515 ... P06654
    P0A015
    P0AEX9
    39094559
    840579 8jxs:A (3.0) BS01 V6X N/A GO:0004930 ... P21728 39094559
    840580 8jxt:R (3.07) BS01 HSM ? GO:0004930 ... Q9H3N8 38509098
    840581 8jxu:A (3.55) BS01 ADP 7.6.2.-
    7.6.2.2
    7.6.2.3
    GO:0005515 ... Q92887 38316776
    840582 8jxu:A (3.55) BS02 ATP 7.6.2.-
    7.6.2.2
    7.6.2.3
    GO:0005515 ... Q92887 38316776
    840583 8jxv:R (3.21) BS01 VBU ? GO:0004930 ... Q9H3N8 38509098
    840584 8jxw:R (3.01) BS01 VCF ? GO:0004930 ... Q9H3N8 38509098
    840585 8jxx:R (3.06) BS01 VCL ? GO:0004930 ... Q9H3N8 38509098
    840586 8jy0:A (2.75) BS01 rna ? GO:0003676 ... P09012 38760339
    840587 8jy0:C (2.75) BS01 rna ? GO:0003676 ... P09012 38760339
    840588 8jy0:E (2.75) BS01 rna ? GO:0003676 ... P09012 38760339
    840589 8jy6:A (2.5) BS01 L1U ? GO:0005886 ... Q6ZXT3 38734677
    840590 8jy6:B (2.5) BS01 L1U ? GO:0005886 ... Q6ZXT3 38734677
    840591 8jy6:C (2.5) BS01 L1U ? GO:0005886 ... Q6ZXT3 38734677
    840592 8jy6:D (2.5) BS01 L1U ? GO:0005886 ... Q6ZXT3 38734677
    840593 8jy8:A (2.45) BS01 PNT ? GO:0005886 ... Q6ZXT3 38734677
    840594 8jy8:B (2.45) BS01 PNT ? GO:0005886 ... Q6ZXT3 38734677
    840595 8jy8:C (2.45) BS01 PNT ? GO:0005886 ... Q6ZXT3 38734677
    840596 8jy8:D (2.45) BS01 PNT ? GO:0005886 ... Q6ZXT3 38734677
    840597 8jy9:A (1.83) BS01 H6P ? N/A A0A345DF50 37674084
    840598 8jy9:B (1.83) BS01 H6P ? N/A A0A345DF50 37674084
    840599 8jya:B (1.5) BS01 IPE ? N/A A0A345DF50 37674084
    840600 8jyc:A (2.29) BS01 DMA ? N/A Q7KYR7 37674084

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).