SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    840401 8jaz:B (1.82) BS02 BEM 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    840402 8jaz:B (1.82) BS03 CA 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    840403 8jaz:B (1.82) BS04 CA 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    840404 8jaz:B (1.82) BS05 CA 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    840405 8jaz:B (1.82) BS06 CA 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    840406 8jaz:B (1.82) BS07 CA 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    840407 8jaz:B (1.82) BS08 CA 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    840408 8jb0:A (4.2) BS01 FE2 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    840409 8jb0:B (4.2) BS01 FE2 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    840410 8jb0:C (4.2) BS01 FE2 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    840411 8jb0:D (4.2) BS01 FE2 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    840412 8jb0:E (4.2) BS01 FE2 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    840413 8jb0:F (4.2) BS01 FE2 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    840414 8jb0:F (4.2) BS02 FE2 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    840415 8jb0:G (4.2) BS01 FE2 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    840416 8jb0:H (4.2) BS01 FE2 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    840417 8jb0:I (4.2) BS01 FE2 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    840418 8jb0:J (4.2) BS01 FE2 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    840419 8jb0:J (4.2) BS02 FE2 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    840420 8jb0:K (4.2) BS01 FE2 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    840421 8jb0:L (4.2) BS01 FE2 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    840422 8jb0:M (4.2) BS01 FE2 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    840423 8jb0:N (4.2) BS01 FE2 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    840424 8jb0:O (4.2) BS01 FE2 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    840425 8jb0:P (4.2) BS01 FE2 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    840426 8jb0:Q (4.2) BS01 FE2 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    840427 8jb0:R (4.2) BS01 FE2 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    840428 8jb0:R (4.2) BS02 FE2 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    840429 8jb0:S (4.2) BS01 FE2 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    840430 8jb0:T (4.2) BS01 FE2 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    840431 8jb0:U (4.2) BS01 FE2 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    840432 8jb0:U (4.2) BS02 FE2 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    840433 8jb0:V (4.2) BS01 FE2 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    840434 8jb0:W (4.2) BS01 FE2 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    840435 8jb0:W (4.2) BS02 FE2 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    840436 8jb0:X (4.2) BS01 FE2 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    840437 8jb1:A (2.44) BS01 NAP N/A GO:0016620 ... N/A 37992937
    840438 8jb1:B (2.44) BS01 NAP N/A GO:0016620 ... N/A 37992937
    840439 8jb3:A (1.77382) BS01 NOS 3.1.3.99 GO:0000287 ... Q99312 38362806
    840440 8jb3:A (1.77382) BS02 PO4 3.1.3.99 GO:0000287 ... Q99312 38362806
    840441 8jb3:A (1.77382) BS03 IMP 3.1.3.99 GO:0000287 ... Q99312 38362806
    840442 8jb3:A (1.77382) BS04 MG 3.1.3.99 GO:0000287 ... Q99312 38362806
    840443 8jb5:A (2.9) BS01 ZN 2.4.1.-
    3.4.22.-
    GO:0005576 ... T0D3N5 N/A
    840444 8jb8:A (2.4) BS01 CAZ 3.5.2.6 GO:0008800 ... F4YXC2 38179965
    840445 8jb8:B (2.4) BS01 CAZ 3.5.2.6 GO:0008800 ... F4YXC2 38179965
    840446 8jba:A (2.6) BS01 AU9 ? N/A Q9NZQ7 37674362
    840447 8jba:B (2.6) BS01 AU9 ? N/A Q9NZQ7 37674362
    840448 8jbb:A (1.81) BS01 rna 3.1.-.- N/A Q53W17 38177499
    840449 8jbb:A (1.81) BS02 rna 3.1.-.- N/A Q53W17 38177499
    840450 8jbb:B (1.81) BS01 rna 3.1.-.- N/A Q53W17 38177499
    840451 8jbb:B (1.81) BS02 rna 3.1.-.- N/A Q53W17 38177499
    840452 8jbf:B (3.0) BS01 peptide ? GO:0004930 ... P29371 37391393
    840453 8jbg:B (2.8) BS01 peptide N/A GO:0004930 ... P29371 37391393
    840454 8jbh:B (2.9) BS01 peptide N/A GO:0004930 ... P29371 37391393
    840455 8jbi:A (2.356) BS01 AMP 2.7.-.- N/A D0ZIB5 N/A
    840456 8jbi:B (2.356) BS01 AMP 2.7.-.- N/A D0ZIB5 N/A
    840457 8jbi:C (2.356) BS01 AMP 2.7.-.- N/A D0ZIB5 N/A
    840458 8jbi:D (2.356) BS01 AMP 2.7.-.- N/A D0ZIB5 N/A
    840459 8jbi:D (2.356) BS02 AMP 2.7.-.- N/A D0ZIB5 N/A
    840460 8jbk:A (2.8) BS01 CLR 7.2.2.13 GO:0000166 ... P05024 37357620
    840461 8jbk:A (2.8) BS02 CLR 7.2.2.13 GO:0000166 ... P05024 37357620
    840462 8jbk:A (2.8) BS03 DMU 7.2.2.13 GO:0000166 ... P05024 37357620
    840463 8jbk:B (2.8) BS01 CLR ? GO:0001671 ... P05027 37357620
    840464 8jbk:C (2.8) BS01 CLR 7.2.2.13 GO:0000166 ... P05024 37357620
    840465 8jbk:C (2.8) BS02 CLR 7.2.2.13 GO:0000166 ... P05024 37357620
    840466 8jbk:D (2.8) BS01 CLR ? GO:0001671 ... P05027 37357620
    840467 8jbk:E (2.8) BS01 CLR ? GO:0001671 ... Q58K79 37357620
    840468 8jbk:E (2.8) BS02 DMU ? GO:0001671 ... Q58K79 37357620
    840469 8jbk:G (2.8) BS01 CLR ? GO:0001671 ... Q58K79 37357620
    840470 8jbl:A (3.0) BS01 MG 7.2.2.13 GO:0000166 ... P05024 37357620
    840471 8jbl:A (3.0) BS02 CLR 7.2.2.13 GO:0000166 ... P05024 37357620
    840472 8jbl:A (3.0) BS03 CLR 7.2.2.13 GO:0000166 ... P05024 37357620
    840473 8jbl:A (3.0) BS04 CLR 7.2.2.13 GO:0000166 ... P05024 37357620
    840474 8jbl:A (3.0) BS05 DMU 7.2.2.13 GO:0000166 ... P05024 37357620
    840475 8jbl:B (3.0) BS01 CLR ? GO:0001671 ... P05027 37357620
    840476 8jbl:C (3.0) BS01 MG 7.2.2.13 GO:0000166 ... P05024 37357620
    840477 8jbl:C (3.0) BS02 MG 7.2.2.13 GO:0000166 ... P05024 37357620
    840478 8jbl:C (3.0) BS03 CLR 7.2.2.13 GO:0000166 ... P05024 37357620
    840479 8jbl:C (3.0) BS04 CLR 7.2.2.13 GO:0000166 ... P05024 37357620
    840480 8jbl:C (3.0) BS05 CLR 7.2.2.13 GO:0000166 ... P05024 37357620
    840481 8jbl:D (3.0) BS01 CLR ? GO:0001671 ... P05027 37357620
    840482 8jbl:E (3.0) BS01 CLR ? GO:0001671 ... Q58K79 37357620
    840483 8jbl:E (3.0) BS02 DMU ? GO:0001671 ... Q58K79 37357620
    840484 8jbl:G (3.0) BS01 CLR ? GO:0001671 ... Q58K79 37357620
    840485 8jbm:A (2.9) BS01 MN 7.2.2.13 GO:0000166 ... P05024 37357620
    840486 8jbm:A (2.9) BS02 CLR 7.2.2.13 GO:0000166 ... P05024 37357620
    840487 8jbm:A (2.9) BS03 CLR 7.2.2.13 GO:0000166 ... P05024 37357620
    840488 8jbm:C (2.9) BS01 MN 7.2.2.13 GO:0000166 ... P05024 37357620
    840489 8jbm:C (2.9) BS02 MN 7.2.2.13 GO:0000166 ... P05024 37357620
    840490 8jbm:C (2.9) BS03 CLR 7.2.2.13 GO:0000166 ... P05024 37357620
    840491 8jbm:C (2.9) BS04 CLR 7.2.2.13 GO:0000166 ... P05024 37357620
    840492 8jbm:C (2.9) BS05 CLR 7.2.2.13 GO:0000166 ... P05024 37357620
    840493 8jbm:D (2.9) BS01 CLR ? GO:0001671 ... P05027 37357620
    840494 8jbm:E (2.9) BS01 CLR ? GO:0001671 ... Q58K79 37357620
    840495 8jbm:E (2.9) BS02 DMU ? GO:0001671 ... Q58K79 37357620
    840496 8jbm:G (2.9) BS01 CLR ? GO:0001671 ... Q58K79 37357620
    840497 8jbn:B (1.99) BS01 U7C 3.1.3.48 GO:0004725 ... P23467 37414577
    840498 8jbo:A (2.0) BS01 IFM 3.2.1.45 GO:0004348 ... F6BL85 37726065
    840499 8jbo:A (2.0) BS02 CA 3.2.1.45 GO:0004348 ... F6BL85 37726065
    840500 8jbo:A (2.0) BS03 CA 3.2.1.45 GO:0004348 ... F6BL85 37726065
    840501 8jbo:B (2.0) BS01 CA 3.2.1.45 GO:0004348 ... F6BL85 37726065
    840502 8jbo:B (2.0) BS02 IFM 3.2.1.45 GO:0004348 ... F6BL85 37726065
    840503 8jbo:B (2.0) BS03 CA 3.2.1.45 GO:0004348 ... F6BL85 37726065
    840504 8jbr:A (2.5) BS01 ATP ? GO:0003824 ... A8YJV7 38340732
    840505 8jbr:A (2.5) BS02 PNS ? GO:0003824 ... A8YJV7 38340732
    840506 8jbs:A (2.3) BS01 B12 N/A GO:0031419 ... N/A 39718193
    840507 8jbs:B (2.3) BS01 B12 N/A GO:0031419 ... N/A 39718193
    840508 8jbt:A (2.3) BS01 B12 N/A GO:0031419 ... N/A 39718193
    840509 8jbt:B (2.3) BS01 B12 N/A GO:0031419 ... N/A 39718193
    840510 8jbw:A (2.65) BS01 CO 1.13.11.27 GO:0003868 ... O42764 38035573
    840511 8jbw:A (2.65) BS02 AIY 1.13.11.27 GO:0003868 ... O42764 38035573
    840512 8jbx:A (3.35) BS01 dna ? GO:0000786 ... P68431 39329259
    840513 8jbx:A (3.35) BS02 dna ? GO:0000786 ... P68431 39329259
    840514 8jbx:B (3.35) BS01 dna ? GO:0000781 ... P62805 39329259
    840515 8jbx:B (3.35) BS02 dna ? GO:0000781 ... P62805 39329259
    840516 8jbx:C (3.35) BS01 dna ? GO:0000786 ... P04908 39329259
    840517 8jbx:C (3.35) BS02 dna ? GO:0000786 ... P04908 39329259
    840518 8jbx:D (3.35) BS01 dna ? GO:0000786 ... P62807 39329259
    840519 8jbx:D (3.35) BS02 dna ? GO:0000786 ... P62807 39329259
    840520 8jbx:E (3.35) BS01 dna ? GO:0000786 ... P68431 39329259
    840521 8jbx:E (3.35) BS02 dna ? GO:0000786 ... P68431 39329259
    840522 8jbx:F (3.35) BS01 dna ? GO:0000781 ... P62805 39329259
    840523 8jbx:F (3.35) BS02 dna ? GO:0000781 ... P62805 39329259
    840524 8jbx:G (3.35) BS01 dna ? GO:0000786 ... P04908 39329259
    840525 8jbx:G (3.35) BS02 dna ? GO:0000786 ... P04908 39329259
    840526 8jbx:H (3.35) BS01 dna ? GO:0000786 ... P62807 39329259
    840527 8jbx:H (3.35) BS02 dna ? GO:0000786 ... P62807 39329259
    840528 8jby:A (1.99) BS01 U7L 3.1.3.48 GO:0004725 ... P23467 37414577
    840529 8jby:B (1.99) BS01 U7L 3.1.3.48 GO:0004725 ... P23467 37414577
    840530 8jbz:AAA (2.079) BS01 FAD 1.3.99.4 GO:0008202 ... Q9RA02 N/A
    840531 8jbz:AAA (2.079) BS02 ASD 1.3.99.4 GO:0008202 ... Q9RA02 N/A
    840532 8jc0:a (3.4) BS01 peptide ? GO:0004888 ... P20963 38657677
    840533 8jc0:g (3.4) BS01 CLR ? GO:0004888 ... P09693 38657677
    840534 8jc0:m (3.4) BS01 peptide ? GO:0002250 ... A0JD36
    B7Z8K6
    38657677
    840535 8jc0:m (3.4) BS02 CLR ? GO:0002250 ... A0JD36
    B7Z8K6
    38657677
    840536 8jc1:A (2.04) BS01 FES N/A GO:0009055 ... C6DJ69 39123319
    840537 8jc1:A (2.04) BS02 MG N/A GO:0009055 ... C6DJ69 39123319
    840538 8jc1:B (2.04) BS01 FES N/A GO:0009055 ... C6DJ69 39123319
    840539 8jc1:B (2.04) BS02 MG N/A GO:0009055 ... C6DJ69 39123319
    840540 8jc1:C (2.04) BS01 FES N/A GO:0009055 ... C6DJ69 39123319
    840541 8jc1:C (2.04) BS02 MG N/A GO:0009055 ... C6DJ69 39123319
    840542 8jc1:D (2.04) BS01 FES N/A GO:0009055 ... C6DJ69 39123319
    840543 8jc1:D (2.04) BS02 MG N/A GO:0009055 ... C6DJ69 39123319
    840544 8jc3:A (1.82) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    840545 8jc3:A (1.82) BS02 LXO 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    840546 8jc3:A (1.82) BS03 PHE 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    840547 8jc3:A (1.82) BS04 LXO 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    840548 8jc3:A (1.82) BS05 PHE 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    840549 8jc3:B (1.82) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    840550 8jc3:B (1.82) BS02 LXO 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    840551 8jc3:B (1.82) BS03 PHE 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    840552 8jc3:B (1.82) BS04 LXO 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    840553 8jc3:B (1.82) BS05 PHE 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    840554 8jc4:A (2.64) BS01 HOA 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    840555 8jc4:A (2.64) BS02 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    840556 8jc4:A (2.64) BS03 UCH 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    840557 8jc4:A (2.64) BS04 PHE 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    840558 8jc4:A (2.64) BS05 UCH 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    840559 8jc4:A (2.64) BS06 PHE 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    840560 8jc4:B (2.64) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    840561 8jc4:B (2.64) BS02 PHE 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    840562 8jc4:B (2.64) BS03 UCH 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    840563 8jc4:B (2.64) BS04 PHE 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    840564 8jc5:A (2.01) BS01 GTP 3.6.5.2 GO:0001778 ... Q9NVJ2 37775038
    840565 8jc5:A (2.01) BS02 MG 3.6.5.2 GO:0001778 ... Q9NVJ2 37775038
    840566 8jc5:B (2.01) BS01 GTP 3.6.5.2 GO:0001778 ... Q9NVJ2 37775038
    840567 8jc5:B (2.01) BS02 MG 3.6.5.2 GO:0001778 ... Q9NVJ2 37775038
    840568 8jc7:A (2.06) BS01 CA N/A GO:0005576 ... N/A 37741869
    840569 8jc7:B (2.06) BS01 CA N/A GO:0005576 ... N/A 37741869
    840570 8jc7:C (2.06) BS01 CA N/A GO:0005576 ... N/A 37741869
    840571 8jc7:D (2.06) BS01 CA N/A GO:0005576 ... N/A 37741869
    840572 8jc7:E (2.06) BS01 CA N/A GO:0005576 ... N/A 37741869
    840573 8jc7:F (2.06) BS01 CA N/A GO:0005576 ... N/A 37741869
    840574 8jc7:G (2.06) BS01 CA N/A GO:0005576 ... N/A 37741869
    840575 8jc8:1 (3.11) BS01 BCL N/A GO:0005515 ... D2Z0P2 38806091
    840576 8jc8:1 (3.11) BS02 CRT N/A GO:0005515 ... D2Z0P2 38806091
    840577 8jc8:1 (3.11) BS03 CA N/A GO:0005515 ... D2Z0P2 38806091
    840578 8jc8:1 (3.11) BS04 CRT N/A GO:0005515 ... D2Z0P2 38806091
    840579 8jc8:1 (3.11) BS05 BCL N/A GO:0005515 ... D2Z0P2 38806091
    840580 8jc8:2 (3.11) BS01 BCL N/A GO:0005515 ... D2Z0P1 38806091
    840581 8jc8:2 (3.11) BS02 CRT N/A GO:0005515 ... D2Z0P1 38806091
    840582 8jc8:2 (3.11) BS03 BCL N/A GO:0005515 ... D2Z0P1 38806091
    840583 8jc8:3 (3.11) BS01 BCL N/A GO:0005515 ... D2Z0P2 38806091
    840584 8jc8:3 (3.11) BS02 CA N/A GO:0005515 ... D2Z0P2 38806091
    840585 8jc8:3 (3.11) BS03 CRT N/A GO:0005515 ... D2Z0P2 38806091
    840586 8jc8:3 (3.11) BS04 BCL N/A GO:0005515 ... D2Z0P2 38806091
    840587 8jc8:3 (3.11) BS05 CRT N/A GO:0005515 ... D2Z0P2 38806091
    840588 8jc8:4 (3.11) BS01 BCL N/A GO:0005515 ... D2Z0P1 38806091
    840589 8jc8:4 (3.11) BS02 BCL N/A GO:0005515 ... D2Z0P1 38806091
    840590 8jc8:4 (3.11) BS03 CRT N/A GO:0005515 ... D2Z0P1 38806091
    840591 8jc8:5 (3.11) BS01 CRT N/A GO:0005515 ... D2Z0P2 38806091
    840592 8jc8:5 (3.11) BS02 BCL N/A GO:0005515 ... D2Z0P2 38806091
    840593 8jc8:5 (3.11) BS03 CA N/A GO:0005515 ... D2Z0P2 38806091
    840594 8jc8:5 (3.11) BS04 BCL N/A GO:0005515 ... D2Z0P2 38806091
    840595 8jc8:5 (3.11) BS05 CRT N/A GO:0005515 ... D2Z0P2 38806091
    840596 8jc8:6 (3.11) BS01 BCL N/A GO:0005515 ... D2Z0P1 38806091
    840597 8jc8:6 (3.11) BS02 BCL N/A GO:0005515 ... D2Z0P1 38806091
    840598 8jc8:6 (3.11) BS03 CRT N/A GO:0005515 ... D2Z0P1 38806091
    840599 8jc8:7 (3.11) BS01 CRT N/A GO:0005515 ... D2Z0P2 38806091
    840600 8jc8:7 (3.11) BS02 BCL N/A GO:0005515 ... D2Z0P2 38806091

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).