SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    841001 8jdj:AK (2.5) BS01 rna ? GO:0002181 ... P62847 37992713
    841002 8jdj:AL (2.5) BS01 rna ? GO:0002181 ... P62851 37992713
    841003 8jdj:AM (2.5) BS01 rna ? GO:0002181 ... P62854 37992713
    841004 8jdj:AM (2.5) BS02 ZN ? GO:0002181 ... P62854 37992713
    841005 8jdj:AN (2.5) BS01 rna ? GO:0002181 ... P42677 37992713
    841006 8jdj:AO (2.5) BS01 rna ? GO:0000028 ... P62857 37992713
    841007 8jdj:AP (2.5) BS01 rna ? GO:0002181 ... P62273 37992713
    841008 8jdj:AP (2.5) BS02 ZN ? GO:0002181 ... P62273 37992713
    841009 8jdj:AQ (2.5) BS01 rna ? GO:0003735 ... P62861 37992713
    841010 8jdj:AR (2.5) BS01 rna ? GO:0001891 ... P63244 37992713
    841011 8jdj:G (2.5) BS01 rna ? GO:0002181 ... P62917 37992713
    841012 8jdj:G (2.5) BS02 MG ? GO:0002181 ... P62917 37992713
    841013 8jdj:H (2.5) BS01 rna ? GO:0002181 ... P39023 37992713
    841014 8jdj:H (2.5) BS02 MG ? GO:0002181 ... P39023 37992713
    841015 8jdj:I (2.5) BS01 rna ? GO:0002181 ... P36578 37992713
    841016 8jdj:I (2.5) BS02 rna ? GO:0002181 ... P36578 37992713
    841017 8jdj:J (2.5) BS01 rna ? GO:0000027 ... P46777 37992713
    841018 8jdj:J (2.5) BS02 rna ? GO:0000027 ... P46777 37992713
    841019 8jdj:K (2.5) BS01 rna ? GO:0002181 ... Q02878 37992713
    841020 8jdj:L (2.5) BS01 rna ? GO:0000463 ... P18124 37992713
    841021 8jdj:L (2.5) BS02 rna ? GO:0000463 ... P18124 37992713
    841022 8jdj:M (2.5) BS01 rna ? GO:0000470 ... P62424 37992713
    841023 8jdj:M (2.5) BS02 rna ? GO:0000470 ... P62424 37992713
    841024 8jdj:N (2.5) BS01 rna ? GO:0002181 ... P32969 37992713
    841025 8jdj:N (2.5) BS02 MG ? GO:0002181 ... P32969 37992713
    841026 8jdj:O (2.5) BS01 rna ? GO:0000027 ... Q96L21 37992713
    841027 8jdj:O (2.5) BS02 rna ? GO:0000027 ... Q96L21 37992713
    841028 8jdj:P (2.5) BS01 rna ? GO:0000027 ... P62913 37992713
    841029 8jdj:P (2.5) BS02 rna ? GO:0000027 ... P62913 37992713
    841030 8jdj:P (2.5) BS03 rna ? GO:0000027 ... P62913 37992713
    841031 8jdj:Q (2.5) BS01 rna ? GO:0002181 ... P26373 37992713
    841032 8jdj:Q (2.5) BS02 rna ? GO:0002181 ... P26373 37992713
    841033 8jdj:R (2.5) BS01 rna ? GO:0002181 ... P50914 37992713
    841034 8jdj:S (2.5) BS01 rna ? GO:0002181 ... P61313 37992713
    841035 8jdj:S (2.5) BS02 rna ? GO:0002181 ... P61313 37992713
    841036 8jdj:T (2.5) BS01 rna ? GO:0002181 ... P40429 37992713
    841037 8jdj:U (2.5) BS01 rna ? GO:0002181 ... P18621 37992713
    841038 8jdj:U (2.5) BS02 rna ? GO:0002181 ... P18621 37992713
    841039 8jdj:V (2.5) BS01 rna ? GO:0002181 ... Q07020 37992713
    841040 8jdj:V (2.5) BS02 MG ? GO:0002181 ... Q07020 37992713
    841041 8jdj:V (2.5) BS03 MG ? GO:0002181 ... Q07020 37992713
    841042 8jdj:W (2.5) BS01 rna ? GO:0002181 ... P84098 37992713
    841043 8jdj:W (2.5) BS02 rna ? GO:0002181 ... P84098 37992713
    841044 8jdj:X (2.5) BS01 rna ? GO:0002181 ... Q02543 37992713
    841045 8jdj:X (2.5) BS02 rna ? GO:0002181 ... Q02543 37992713
    841046 8jdj:Y (2.5) BS01 rna ? GO:0001650 ... P46778 37992713
    841047 8jdj:Y (2.5) BS02 rna ? GO:0001650 ... P46778 37992713
    841048 8jdj:Z (2.5) BS01 rna ? GO:0002181 ... P35268 37992713
    841049 8jdj:a (2.5) BS01 rna ? GO:0000122 ... P62829 37992713
    841050 8jdj:b (2.5) BS01 rna ? GO:0002181 ... P83731 37992713
    841051 8jdj:c (2.5) BS01 rna ? GO:0002181 ... P62750 37992713
    841052 8jdj:c (2.5) BS02 rna ? GO:0002181 ... P62750 37992713
    841053 8jdj:d (2.5) BS01 rna ? GO:0002181 ... P61254 37992713
    841054 8jdj:d (2.5) BS02 rna ? GO:0002181 ... P61254 37992713
    841055 8jdj:e (2.5) BS01 rna ? GO:0002181 ... P61353 37992713
    841056 8jdj:f (2.5) BS01 rna ? GO:0002181 ... P46776 37992713
    841057 8jdj:g (2.5) BS01 rna ? GO:0002181 ... P47914 37992713
    841058 8jdj:g (2.5) BS02 MG ? GO:0002181 ... P47914 37992713
    841059 8jdj:h (2.5) BS01 rna ? GO:0002181 ... P62888 37992713
    841060 8jdj:i (2.5) BS01 rna ? GO:0002181 ... P62899 37992713
    841061 8jdj:j (2.5) BS01 rna ? GO:0002181 ... P62910 37992713
    841062 8jdj:j (2.5) BS02 MG ? GO:0002181 ... P62910 37992713
    841063 8jdj:k (2.5) BS01 rna ? GO:0002181 ... P18077 37992713
    841064 8jdj:k (2.5) BS02 MG ? GO:0002181 ... P18077 37992713
    841065 8jdj:l (2.5) BS01 rna ? GO:0002181 ... P49207 37992713
    841066 8jdj:l (2.5) BS02 MG ? GO:0002181 ... P49207 37992713
    841067 8jdj:m (2.5) BS01 rna ? GO:0000463 ... P42766 37992713
    841068 8jdj:m (2.5) BS02 rna ? GO:0000463 ... P42766 37992713
    841069 8jdj:n (2.5) BS01 rna ? GO:0002181 ... Q9Y3U8 37992713
    841070 8jdj:o (2.5) BS01 rna ? GO:0000448 ... P61927 37992713
    841071 8jdj:o (2.5) BS02 rna ? GO:0000448 ... P61927 37992713
    841072 8jdj:o (2.5) BS03 ZN ? GO:0000448 ... P61927 37992713
    841073 8jdj:p (2.5) BS01 rna ? GO:0002181 ... P63173 37992713
    841074 8jdj:q (2.5) BS01 rna ? GO:0002181 ... P62891 37992713
    841075 8jdj:q (2.5) BS02 rna ? GO:0002181 ... P62891 37992713
    841076 8jdj:r (2.5) BS01 rna ? GO:0002181 ... P62987 37992713
    841077 8jdj:r (2.5) BS02 ZN ? GO:0002181 ... P62987 37992713
    841078 8jdj:t (2.5) BS01 rna ? GO:0002181 ... P83881 37992713
    841079 8jdj:t (2.5) BS02 ZN ? GO:0002181 ... P83881 37992713
    841080 8jdj:u (2.5) BS01 rna ? GO:0002181 ... P61513 37992713
    841081 8jdj:u (2.5) BS02 MG ? GO:0002181 ... P61513 37992713
    841082 8jdj:u (2.5) BS03 ZN ? GO:0002181 ... P61513 37992713
    841083 8jdj:v (2.5) BS01 rna ? GO:0002181 ... P46779 37992713
    841084 8jdj:x (2.5) BS01 rna ? GO:0000028 ... P08865 37992713
    841085 8jdj:y (2.5) BS01 rna ? GO:0002181 ... P61247 37992713
    841086 8jdj:z (2.5) BS01 rna ? GO:0002181 ... P15880 37992713
    841087 8jdk:0 (2.26) BS01 rna 4.2.99.18 GO:0001228 ... P23396 37992713
    841088 8jdk:1 (2.26) BS01 rna ? GO:0002181 ... P62701 37992713
    841089 8jdk:2 (2.26) BS01 rna ? GO:0002181 ... P46782 37992713
    841090 8jdk:2 (2.26) BS02 MG ? GO:0002181 ... P46782 37992713
    841091 8jdk:3 (2.26) BS01 rna ? GO:0002181 ... P62753 37992713
    841092 8jdk:4 (2.26) BS01 rna ? GO:0002181 ... P62081 37992713
    841093 8jdk:5 (2.26) BS01 rna ? GO:0002181 ... P62241 37992713
    841094 8jdk:5 (2.26) BS02 rna ? GO:0002181 ... P62241 37992713
    841095 8jdk:6 (2.26) BS01 rna ? GO:0002181 ... P46781 37992713
    841096 8jdk:7 (2.26) BS01 rna ? GO:0002181 ... P46783 37992713
    841097 8jdk:8 (2.26) BS01 rna ? GO:0002181 ... P62280 37992713
    841098 8jdk:9 (2.26) BS01 rna ? GO:0000462 ... P62277 37992713
    841099 8jdk:AA (2.26) BS01 rna ? GO:0000028 ... P62263 37992713
    841100 8jdk:AB (2.26) BS01 rna ? GO:0000056 ... P62841 37992713
    841101 8jdk:AB (2.26) BS02 rna ? GO:0000056 ... P62841 37992713
    841102 8jdk:AC (2.26) BS01 rna ? GO:0000462 ... P62249 37992713
    841103 8jdk:AD (2.26) BS01 rna ? GO:0002181 ... P08708 37992713
    841104 8jdk:AE (2.26) BS01 rna ? GO:0002181 ... P62269 37992713
    841105 8jdk:AF (2.26) BS01 rna ? GO:0000028 ... P39019 37992713
    841106 8jdk:AG (2.26) BS01 rna ? GO:0002181 ... P60866 37992713
    841107 8jdk:AI (2.26) BS01 rna ? GO:0002181 ... P62244 37992713
    841108 8jdk:AJ (2.26) BS01 rna ? GO:0002181 ... P62266 37992713
    841109 8jdk:AK (2.26) BS01 rna ? GO:0002181 ... P62847 37992713
    841110 8jdk:AL (2.26) BS01 rna ? GO:0002181 ... P62851 37992713
    841111 8jdk:AM (2.26) BS01 rna ? GO:0002181 ... P62854 37992713
    841112 8jdk:AM (2.26) BS02 ZN ? GO:0002181 ... P62854 37992713
    841113 8jdk:AN (2.26) BS01 rna ? GO:0002181 ... P42677 37992713
    841114 8jdk:AO (2.26) BS01 rna ? GO:0000028 ... P62857 37992713
    841115 8jdk:AP (2.26) BS01 rna ? GO:0002181 ... P62273 37992713
    841116 8jdk:AP (2.26) BS02 ZN ? GO:0002181 ... P62273 37992713
    841117 8jdk:AQ (2.26) BS01 rna ? GO:0003735 ... P62861 37992713
    841118 8jdk:AR (2.26) BS01 rna ? GO:0001891 ... P63244 37992713
    841119 8jdk:G (2.26) BS01 rna ? GO:0002181 ... P62917 37992713
    841120 8jdk:G (2.26) BS02 MG ? GO:0002181 ... P62917 37992713
    841121 8jdk:H (2.26) BS01 rna ? GO:0002181 ... P39023 37992713
    841122 8jdk:H (2.26) BS02 MG ? GO:0002181 ... P39023 37992713
    841123 8jdk:I (2.26) BS01 rna ? GO:0002181 ... P36578 37992713
    841124 8jdk:I (2.26) BS02 rna ? GO:0002181 ... P36578 37992713
    841125 8jdk:J (2.26) BS01 rna ? GO:0000027 ... P46777 37992713
    841126 8jdk:J (2.26) BS02 rna ? GO:0000027 ... P46777 37992713
    841127 8jdk:K (2.26) BS01 rna ? GO:0002181 ... Q02878 37992713
    841128 8jdk:L (2.26) BS01 rna ? GO:0000463 ... P18124 37992713
    841129 8jdk:L (2.26) BS02 rna ? GO:0000463 ... P18124 37992713
    841130 8jdk:M (2.26) BS01 rna ? GO:0000470 ... P62424 37992713
    841131 8jdk:M (2.26) BS02 rna ? GO:0000470 ... P62424 37992713
    841132 8jdk:N (2.26) BS01 rna ? GO:0002181 ... P32969 37992713
    841133 8jdk:N (2.26) BS02 MG ? GO:0002181 ... P32969 37992713
    841134 8jdk:O (2.26) BS01 rna ? GO:0000027 ... Q96L21 37992713
    841135 8jdk:O (2.26) BS02 rna ? GO:0000027 ... Q96L21 37992713
    841136 8jdk:P (2.26) BS01 rna ? GO:0000027 ... P62913 37992713
    841137 8jdk:P (2.26) BS02 rna ? GO:0000027 ... P62913 37992713
    841138 8jdk:P (2.26) BS03 rna ? GO:0000027 ... P62913 37992713
    841139 8jdk:Q (2.26) BS01 rna ? GO:0002181 ... P26373 37992713
    841140 8jdk:Q (2.26) BS02 rna ? GO:0002181 ... P26373 37992713
    841141 8jdk:R (2.26) BS01 rna ? GO:0002181 ... P50914 37992713
    841142 8jdk:S (2.26) BS01 rna ? GO:0002181 ... P61313 37992713
    841143 8jdk:S (2.26) BS02 rna ? GO:0002181 ... P61313 37992713
    841144 8jdk:T (2.26) BS01 rna ? GO:0002181 ... P40429 37992713
    841145 8jdk:U (2.26) BS01 rna ? GO:0002181 ... P18621 37992713
    841146 8jdk:U (2.26) BS02 rna ? GO:0002181 ... P18621 37992713
    841147 8jdk:V (2.26) BS01 rna ? GO:0002181 ... Q07020 37992713
    841148 8jdk:V (2.26) BS02 MG ? GO:0002181 ... Q07020 37992713
    841149 8jdk:V (2.26) BS03 MG ? GO:0002181 ... Q07020 37992713
    841150 8jdk:W (2.26) BS01 rna ? GO:0002181 ... P84098 37992713
    841151 8jdk:W (2.26) BS02 rna ? GO:0002181 ... P84098 37992713
    841152 8jdk:X (2.26) BS01 rna ? GO:0002181 ... Q02543 37992713
    841153 8jdk:X (2.26) BS02 rna ? GO:0002181 ... Q02543 37992713
    841154 8jdk:Y (2.26) BS01 rna ? GO:0001650 ... P46778 37992713
    841155 8jdk:Y (2.26) BS02 rna ? GO:0001650 ... P46778 37992713
    841156 8jdk:Z (2.26) BS01 rna ? GO:0002181 ... P35268 37992713
    841157 8jdk:a (2.26) BS01 rna ? GO:0000122 ... P62829 37992713
    841158 8jdk:b (2.26) BS01 rna ? GO:0002181 ... P83731 37992713
    841159 8jdk:c (2.26) BS01 rna ? GO:0002181 ... P62750 37992713
    841160 8jdk:c (2.26) BS02 rna ? GO:0002181 ... P62750 37992713
    841161 8jdk:d (2.26) BS01 rna ? GO:0002181 ... P61254 37992713
    841162 8jdk:d (2.26) BS02 rna ? GO:0002181 ... P61254 37992713
    841163 8jdk:e (2.26) BS01 rna ? GO:0002181 ... P61353 37992713
    841164 8jdk:f (2.26) BS01 rna ? GO:0002181 ... P46776 37992713
    841165 8jdk:g (2.26) BS01 rna ? GO:0002181 ... P47914 37992713
    841166 8jdk:g (2.26) BS02 MG ? GO:0002181 ... P47914 37992713
    841167 8jdk:h (2.26) BS01 rna ? GO:0002181 ... P62888 37992713
    841168 8jdk:i (2.26) BS01 rna ? GO:0002181 ... P62899 37992713
    841169 8jdk:j (2.26) BS01 rna ? GO:0002181 ... P62910 37992713
    841170 8jdk:j (2.26) BS02 MG ? GO:0002181 ... P62910 37992713
    841171 8jdk:k (2.26) BS01 rna ? GO:0002181 ... P18077 37992713
    841172 8jdk:k (2.26) BS02 MG ? GO:0002181 ... P18077 37992713
    841173 8jdk:l (2.26) BS01 rna ? GO:0002181 ... P49207 37992713
    841174 8jdk:l (2.26) BS02 MG ? GO:0002181 ... P49207 37992713
    841175 8jdk:m (2.26) BS01 rna ? GO:0000463 ... P42766 37992713
    841176 8jdk:m (2.26) BS02 rna ? GO:0000463 ... P42766 37992713
    841177 8jdk:n (2.26) BS01 rna ? GO:0002181 ... Q9Y3U8 37992713
    841178 8jdk:o (2.26) BS01 rna ? GO:0000448 ... P61927 37992713
    841179 8jdk:o (2.26) BS02 rna ? GO:0000448 ... P61927 37992713
    841180 8jdk:o (2.26) BS03 ZN ? GO:0000448 ... P61927 37992713
    841181 8jdk:p (2.26) BS01 rna ? GO:0002181 ... P63173 37992713
    841182 8jdk:q (2.26) BS01 rna ? GO:0002181 ... P62891 37992713
    841183 8jdk:q (2.26) BS02 rna ? GO:0002181 ... P62891 37992713
    841184 8jdk:r (2.26) BS01 rna ? GO:0002181 ... P62987 37992713
    841185 8jdk:r (2.26) BS02 ZN ? GO:0002181 ... P62987 37992713
    841186 8jdk:t (2.26) BS01 rna ? GO:0002181 ... P83881 37992713
    841187 8jdk:t (2.26) BS02 ZN ? GO:0002181 ... P83881 37992713
    841188 8jdk:u (2.26) BS01 rna ? GO:0002181 ... P61513 37992713
    841189 8jdk:u (2.26) BS02 MG ? GO:0002181 ... P61513 37992713
    841190 8jdk:u (2.26) BS03 ZN ? GO:0002181 ... P61513 37992713
    841191 8jdk:v (2.26) BS01 rna ? GO:0002181 ... P46779 37992713
    841192 8jdk:x (2.26) BS01 rna ? GO:0000028 ... P08865 37992713
    841193 8jdk:y (2.26) BS01 rna ? GO:0002181 ... P61247 37992713
    841194 8jdk:z (2.26) BS01 rna ? GO:0002181 ... P15880 37992713
    841195 8jdl:0 (2.42) BS01 rna 4.2.99.18 GO:0001228 ... P23396 37992713
    841196 8jdl:1 (2.42) BS01 rna ? GO:0002181 ... P62701 37992713
    841197 8jdl:2 (2.42) BS01 rna ? GO:0002181 ... P46782 37992713
    841198 8jdl:2 (2.42) BS02 MG ? GO:0002181 ... P46782 37992713
    841199 8jdl:3 (2.42) BS01 rna ? GO:0002181 ... P62753 37992713
    841200 8jdl:4 (2.42) BS01 rna ? GO:0002181 ... P62081 37992713

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).