SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    841201 8jdl:5 (2.42) BS01 rna ? GO:0002181 ... P62241 37992713
    841202 8jdl:5 (2.42) BS02 rna ? GO:0002181 ... P62241 37992713
    841203 8jdl:6 (2.42) BS01 rna ? GO:0002181 ... P46781 37992713
    841204 8jdl:7 (2.42) BS01 rna ? GO:0002181 ... P46783 37992713
    841205 8jdl:8 (2.42) BS01 rna ? GO:0002181 ... P62280 37992713
    841206 8jdl:9 (2.42) BS01 rna ? GO:0000462 ... P62277 37992713
    841207 8jdl:AA (2.42) BS01 rna ? GO:0000028 ... P62263 37992713
    841208 8jdl:AA (2.42) BS02 MG ? GO:0000028 ... P62263 37992713
    841209 8jdl:AB (2.42) BS01 rna ? GO:0000056 ... P62841 37992713
    841210 8jdl:AB (2.42) BS02 rna ? GO:0000056 ... P62841 37992713
    841211 8jdl:AB (2.42) BS03 rna ? GO:0000056 ... P62841 37992713
    841212 8jdl:AC (2.42) BS01 rna ? GO:0000462 ... P62249 37992713
    841213 8jdl:AD (2.42) BS01 rna ? GO:0002181 ... P08708 37992713
    841214 8jdl:AE (2.42) BS01 rna ? GO:0002181 ... P62269 37992713
    841215 8jdl:AF (2.42) BS01 rna ? GO:0000028 ... P39019 37992713
    841216 8jdl:AG (2.42) BS01 rna ? GO:0002181 ... P60866 37992713
    841217 8jdl:AI (2.42) BS01 rna ? GO:0002181 ... P62244 37992713
    841218 8jdl:AJ (2.42) BS01 rna ? GO:0002181 ... P62266 37992713
    841219 8jdl:AK (2.42) BS01 rna ? GO:0002181 ... P62847 37992713
    841220 8jdl:AL (2.42) BS01 rna ? GO:0002181 ... P62851 37992713
    841221 8jdl:AM (2.42) BS01 rna ? GO:0002181 ... P62854 37992713
    841222 8jdl:AM (2.42) BS02 ZN ? GO:0002181 ... P62854 37992713
    841223 8jdl:AN (2.42) BS01 rna ? GO:0002181 ... P42677 37992713
    841224 8jdl:AO (2.42) BS01 rna ? GO:0000028 ... P62857 37992713
    841225 8jdl:AP (2.42) BS01 rna ? GO:0002181 ... P62273 37992713
    841226 8jdl:AP (2.42) BS02 ZN ? GO:0002181 ... P62273 37992713
    841227 8jdl:AQ (2.42) BS01 rna ? GO:0003735 ... P62861 37992713
    841228 8jdl:AR (2.42) BS01 rna ? GO:0001891 ... P63244 37992713
    841229 8jdl:G (2.42) BS01 rna ? GO:0002181 ... P62917 37992713
    841230 8jdl:G (2.42) BS02 MG ? GO:0002181 ... P62917 37992713
    841231 8jdl:G (2.42) BS03 MG ? GO:0002181 ... P62917 37992713
    841232 8jdl:H (2.42) BS01 rna ? GO:0002181 ... P39023 37992713
    841233 8jdl:H (2.42) BS02 MG ? GO:0002181 ... P39023 37992713
    841234 8jdl:I (2.42) BS01 rna ? GO:0002181 ... P36578 37992713
    841235 8jdl:I (2.42) BS02 rna ? GO:0002181 ... P36578 37992713
    841236 8jdl:J (2.42) BS01 rna ? GO:0000027 ... P46777 37992713
    841237 8jdl:J (2.42) BS02 rna ? GO:0000027 ... P46777 37992713
    841238 8jdl:K (2.42) BS01 rna ? GO:0002181 ... Q02878 37992713
    841239 8jdl:L (2.42) BS01 rna ? GO:0000463 ... P18124 37992713
    841240 8jdl:L (2.42) BS02 rna ? GO:0000463 ... P18124 37992713
    841241 8jdl:M (2.42) BS01 rna ? GO:0000470 ... P62424 37992713
    841242 8jdl:M (2.42) BS02 rna ? GO:0000470 ... P62424 37992713
    841243 8jdl:N (2.42) BS01 rna ? GO:0002181 ... P32969 37992713
    841244 8jdl:N (2.42) BS02 MG ? GO:0002181 ... P32969 37992713
    841245 8jdl:O (2.42) BS01 rna ? GO:0000027 ... Q96L21 37992713
    841246 8jdl:O (2.42) BS02 rna ? GO:0000027 ... Q96L21 37992713
    841247 8jdl:P (2.42) BS01 rna ? GO:0000027 ... P62913 37992713
    841248 8jdl:P (2.42) BS02 rna ? GO:0000027 ... P62913 37992713
    841249 8jdl:P (2.42) BS03 rna ? GO:0000027 ... P62913 37992713
    841250 8jdl:Q (2.42) BS01 rna ? GO:0002181 ... P26373 37992713
    841251 8jdl:Q (2.42) BS02 rna ? GO:0002181 ... P26373 37992713
    841252 8jdl:R (2.42) BS01 rna ? GO:0002181 ... P50914 37992713
    841253 8jdl:S (2.42) BS01 rna ? GO:0002181 ... P61313 37992713
    841254 8jdl:S (2.42) BS02 rna ? GO:0002181 ... P61313 37992713
    841255 8jdl:T (2.42) BS01 rna ? GO:0002181 ... P40429 37992713
    841256 8jdl:U (2.42) BS01 rna ? GO:0002181 ... P18621 37992713
    841257 8jdl:U (2.42) BS02 rna ? GO:0002181 ... P18621 37992713
    841258 8jdl:V (2.42) BS01 rna ? GO:0002181 ... Q07020 37992713
    841259 8jdl:V (2.42) BS02 MG ? GO:0002181 ... Q07020 37992713
    841260 8jdl:V (2.42) BS03 MG ? GO:0002181 ... Q07020 37992713
    841261 8jdl:W (2.42) BS01 rna ? GO:0002181 ... P84098 37992713
    841262 8jdl:W (2.42) BS02 rna ? GO:0002181 ... P84098 37992713
    841263 8jdl:X (2.42) BS01 rna ? GO:0002181 ... Q02543 37992713
    841264 8jdl:X (2.42) BS02 rna ? GO:0002181 ... Q02543 37992713
    841265 8jdl:Y (2.42) BS01 rna ? GO:0001650 ... P46778 37992713
    841266 8jdl:Y (2.42) BS02 rna ? GO:0001650 ... P46778 37992713
    841267 8jdl:Z (2.42) BS01 rna ? GO:0002181 ... P35268 37992713
    841268 8jdl:a (2.42) BS01 rna ? GO:0000122 ... P62829 37992713
    841269 8jdl:b (2.42) BS01 rna ? GO:0002181 ... P83731 37992713
    841270 8jdl:c (2.42) BS01 rna ? GO:0002181 ... P62750 37992713
    841271 8jdl:c (2.42) BS02 rna ? GO:0002181 ... P62750 37992713
    841272 8jdl:d (2.42) BS01 rna ? GO:0002181 ... P61254 37992713
    841273 8jdl:d (2.42) BS02 rna ? GO:0002181 ... P61254 37992713
    841274 8jdl:e (2.42) BS01 rna ? GO:0002181 ... P61353 37992713
    841275 8jdl:f (2.42) BS01 rna ? GO:0002181 ... P46776 37992713
    841276 8jdl:g (2.42) BS01 rna ? GO:0002181 ... P47914 37992713
    841277 8jdl:g (2.42) BS02 MG ? GO:0002181 ... P47914 37992713
    841278 8jdl:h (2.42) BS01 rna ? GO:0002181 ... P62888 37992713
    841279 8jdl:i (2.42) BS01 rna ? GO:0002181 ... P62899 37992713
    841280 8jdl:j (2.42) BS01 rna ? GO:0002181 ... P62910 37992713
    841281 8jdl:j (2.42) BS02 MG ? GO:0002181 ... P62910 37992713
    841282 8jdl:k (2.42) BS01 rna ? GO:0002181 ... P18077 37992713
    841283 8jdl:k (2.42) BS02 MG ? GO:0002181 ... P18077 37992713
    841284 8jdl:l (2.42) BS01 rna ? GO:0002181 ... P49207 37992713
    841285 8jdl:l (2.42) BS02 MG ? GO:0002181 ... P49207 37992713
    841286 8jdl:m (2.42) BS01 rna ? GO:0000463 ... P42766 37992713
    841287 8jdl:m (2.42) BS02 rna ? GO:0000463 ... P42766 37992713
    841288 8jdl:n (2.42) BS01 rna ? GO:0002181 ... Q9Y3U8 37992713
    841289 8jdl:o (2.42) BS01 rna ? GO:0000448 ... P61927 37992713
    841290 8jdl:o (2.42) BS02 rna ? GO:0000448 ... P61927 37992713
    841291 8jdl:o (2.42) BS03 ZN ? GO:0000448 ... P61927 37992713
    841292 8jdl:p (2.42) BS01 rna ? GO:0002181 ... P63173 37992713
    841293 8jdl:q (2.42) BS01 rna ? GO:0002181 ... P62891 37992713
    841294 8jdl:q (2.42) BS02 rna ? GO:0002181 ... P62891 37992713
    841295 8jdl:r (2.42) BS01 rna ? GO:0002181 ... P62987 37992713
    841296 8jdl:r (2.42) BS02 ZN ? GO:0002181 ... P62987 37992713
    841297 8jdl:t (2.42) BS01 rna ? GO:0002181 ... P83881 37992713
    841298 8jdl:t (2.42) BS02 ZN ? GO:0002181 ... P83881 37992713
    841299 8jdl:u (2.42) BS01 rna ? GO:0002181 ... P61513 37992713
    841300 8jdl:u (2.42) BS02 ZN ? GO:0002181 ... P61513 37992713
    841301 8jdl:v (2.42) BS01 rna ? GO:0002181 ... P46779 37992713
    841302 8jdl:x (2.42) BS01 rna ? GO:0000028 ... P08865 37992713
    841303 8jdl:y (2.42) BS01 rna ? GO:0002181 ... P61247 37992713
    841304 8jdl:z (2.42) BS01 rna ? GO:0002181 ... P15880 37992713
    841305 8jdm:0 (2.67) BS01 rna 4.2.99.18 GO:0001228 ... P23396 37992713
    841306 8jdm:1 (2.67) BS01 rna ? GO:0002181 ... P62701 37992713
    841307 8jdm:2 (2.67) BS01 rna ? GO:0002181 ... P46782 37992713
    841308 8jdm:3 (2.67) BS01 rna ? GO:0002181 ... P62753 37992713
    841309 8jdm:4 (2.67) BS01 rna ? GO:0002181 ... P62081 37992713
    841310 8jdm:5 (2.67) BS01 rna ? GO:0002181 ... P62241 37992713
    841311 8jdm:5 (2.67) BS02 rna ? GO:0002181 ... P62241 37992713
    841312 8jdm:6 (2.67) BS01 rna ? GO:0002181 ... P46781 37992713
    841313 8jdm:7 (2.67) BS01 rna ? GO:0002181 ... P46783 37992713
    841314 8jdm:8 (2.67) BS01 rna ? GO:0002181 ... P62280 37992713
    841315 8jdm:9 (2.67) BS01 rna ? GO:0000462 ... P62277 37992713
    841316 8jdm:AA (2.67) BS01 rna ? GO:0000028 ... P62263 37992713
    841317 8jdm:AA (2.67) BS02 MG ? GO:0000028 ... P62263 37992713
    841318 8jdm:AB (2.67) BS01 rna ? GO:0000056 ... P62841 37992713
    841319 8jdm:AB (2.67) BS02 rna ? GO:0000056 ... P62841 37992713
    841320 8jdm:AC (2.67) BS01 rna ? GO:0000462 ... P62249 37992713
    841321 8jdm:AD (2.67) BS01 rna ? GO:0002181 ... P08708 37992713
    841322 8jdm:AE (2.67) BS01 rna ? GO:0002181 ... P62269 37992713
    841323 8jdm:AE (2.67) BS02 rna ? GO:0002181 ... P62269 37992713
    841324 8jdm:AF (2.67) BS01 rna ? GO:0000028 ... P39019 37992713
    841325 8jdm:AG (2.67) BS01 rna ? GO:0002181 ... P60866 37992713
    841326 8jdm:AI (2.67) BS01 rna ? GO:0002181 ... P62244 37992713
    841327 8jdm:AJ (2.67) BS01 rna ? GO:0002181 ... P62266 37992713
    841328 8jdm:AK (2.67) BS01 rna ? GO:0002181 ... P62847 37992713
    841329 8jdm:AL (2.67) BS01 rna ? GO:0002181 ... P62851 37992713
    841330 8jdm:AM (2.67) BS01 rna ? GO:0002181 ... P62854 37992713
    841331 8jdm:AN (2.67) BS01 rna ? GO:0002181 ... P42677 37992713
    841332 8jdm:AO (2.67) BS01 rna ? GO:0000028 ... P62857 37992713
    841333 8jdm:AP (2.67) BS01 rna ? GO:0002181 ... P62273 37992713
    841334 8jdm:AQ (2.67) BS01 rna ? GO:0003735 ... P62861 37992713
    841335 8jdm:AR (2.67) BS01 rna ? GO:0001891 ... P63244 37992713
    841336 8jdm:G (2.67) BS01 rna ? GO:0002181 ... P62917 37992713
    841337 8jdm:G (2.67) BS02 MG ? GO:0002181 ... P62917 37992713
    841338 8jdm:H (2.67) BS01 rna ? GO:0002181 ... P39023 37992713
    841339 8jdm:H (2.67) BS02 MG ? GO:0002181 ... P39023 37992713
    841340 8jdm:I (2.67) BS01 rna ? GO:0002181 ... P36578 37992713
    841341 8jdm:I (2.67) BS02 rna ? GO:0002181 ... P36578 37992713
    841342 8jdm:J (2.67) BS01 rna ? GO:0000027 ... P46777 37992713
    841343 8jdm:J (2.67) BS02 rna ? GO:0000027 ... P46777 37992713
    841344 8jdm:K (2.67) BS01 rna ? GO:0002181 ... Q02878 37992713
    841345 8jdm:L (2.67) BS01 rna ? GO:0000463 ... P18124 37992713
    841346 8jdm:L (2.67) BS02 rna ? GO:0000463 ... P18124 37992713
    841347 8jdm:M (2.67) BS01 rna ? GO:0000470 ... P62424 37992713
    841348 8jdm:M (2.67) BS02 rna ? GO:0000470 ... P62424 37992713
    841349 8jdm:N (2.67) BS01 rna ? GO:0002181 ... P32969 37992713
    841350 8jdm:N (2.67) BS02 MG ? GO:0002181 ... P32969 37992713
    841351 8jdm:O (2.67) BS01 rna ? GO:0000027 ... Q96L21 37992713
    841352 8jdm:O (2.67) BS02 rna ? GO:0000027 ... Q96L21 37992713
    841353 8jdm:O (2.67) BS03 rna ? GO:0000027 ... Q96L21 37992713
    841354 8jdm:P (2.67) BS01 rna ? GO:0000027 ... P62913 37992713
    841355 8jdm:P (2.67) BS02 rna ? GO:0000027 ... P62913 37992713
    841356 8jdm:Q (2.67) BS01 rna ? GO:0002181 ... P26373 37992713
    841357 8jdm:Q (2.67) BS02 rna ? GO:0002181 ... P26373 37992713
    841358 8jdm:R (2.67) BS01 rna ? GO:0002181 ... P50914 37992713
    841359 8jdm:S (2.67) BS01 rna ? GO:0002181 ... P61313 37992713
    841360 8jdm:S (2.67) BS02 rna ? GO:0002181 ... P61313 37992713
    841361 8jdm:T (2.67) BS01 rna ? GO:0002181 ... P40429 37992713
    841362 8jdm:U (2.67) BS01 rna ? GO:0002181 ... P18621 37992713
    841363 8jdm:U (2.67) BS02 rna ? GO:0002181 ... P18621 37992713
    841364 8jdm:V (2.67) BS01 rna ? GO:0002181 ... Q07020 37992713
    841365 8jdm:V (2.67) BS02 MG ? GO:0002181 ... Q07020 37992713
    841366 8jdm:V (2.67) BS03 MG ? GO:0002181 ... Q07020 37992713
    841367 8jdm:W (2.67) BS01 rna ? GO:0002181 ... P84098 37992713
    841368 8jdm:W (2.67) BS02 rna ? GO:0002181 ... P84098 37992713
    841369 8jdm:X (2.67) BS01 rna ? GO:0002181 ... Q02543 37992713
    841370 8jdm:X (2.67) BS02 rna ? GO:0002181 ... Q02543 37992713
    841371 8jdm:Y (2.67) BS01 rna ? GO:0001650 ... P46778 37992713
    841372 8jdm:Y (2.67) BS02 rna ? GO:0001650 ... P46778 37992713
    841373 8jdm:Z (2.67) BS01 rna ? GO:0002181 ... P35268 37992713
    841374 8jdm:a (2.67) BS01 rna ? GO:0000122 ... P62829 37992713
    841375 8jdm:a (2.67) BS02 rna ? GO:0000122 ... P62829 37992713
    841376 8jdm:b (2.67) BS01 rna ? GO:0002181 ... P83731 37992713
    841377 8jdm:c (2.67) BS01 rna ? GO:0002181 ... P62750 37992713
    841378 8jdm:c (2.67) BS02 rna ? GO:0002181 ... P62750 37992713
    841379 8jdm:d (2.67) BS01 rna ? GO:0002181 ... P61254 37992713
    841380 8jdm:d (2.67) BS02 rna ? GO:0002181 ... P61254 37992713
    841381 8jdm:e (2.67) BS01 rna ? GO:0002181 ... P61353 37992713
    841382 8jdm:f (2.67) BS01 rna ? GO:0002181 ... P46776 37992713
    841383 8jdm:g (2.67) BS01 rna ? GO:0002181 ... P47914 37992713
    841384 8jdm:h (2.67) BS01 rna ? GO:0002181 ... P62888 37992713
    841385 8jdm:i (2.67) BS01 rna ? GO:0002181 ... P62899 37992713
    841386 8jdm:j (2.67) BS01 rna ? GO:0002181 ... P62910 37992713
    841387 8jdm:j (2.67) BS02 MG ? GO:0002181 ... P62910 37992713
    841388 8jdm:k (2.67) BS01 rna ? GO:0002181 ... P18077 37992713
    841389 8jdm:k (2.67) BS02 MG ? GO:0002181 ... P18077 37992713
    841390 8jdm:l (2.67) BS01 rna ? GO:0002181 ... P49207 37992713
    841391 8jdm:l (2.67) BS02 MG ? GO:0002181 ... P49207 37992713
    841392 8jdm:m (2.67) BS01 rna ? GO:0000463 ... P42766 37992713
    841393 8jdm:m (2.67) BS02 rna ? GO:0000463 ... P42766 37992713
    841394 8jdm:n (2.67) BS01 rna ? GO:0002181 ... Q9Y3U8 37992713
    841395 8jdm:o (2.67) BS01 rna ? GO:0000448 ... P61927 37992713
    841396 8jdm:o (2.67) BS02 rna ? GO:0000448 ... P61927 37992713
    841397 8jdm:o (2.67) BS03 ZN ? GO:0000448 ... P61927 37992713
    841398 8jdm:p (2.67) BS01 rna ? GO:0002181 ... P63173 37992713
    841399 8jdm:q (2.67) BS01 rna ? GO:0002181 ... P62891 37992713
    841400 8jdm:q (2.67) BS02 rna ? GO:0002181 ... P62891 37992713

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).