SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    841401 8k06:C (1.845) BS01 PSU 4.2.1.70 GO:0001522 ... Q84K35 38117089
    841402 8k08:A (3.5) BS01 8YG N/A N/A A0A0M4ME80 39887940
    841403 8k08:B (3.5) BS01 8YG N/A N/A A0A0M4ME80 39887940
    841404 8k09:A (3.36) BS01 VEI N/A N/A A0A0M4ME80 39887940
    841405 8k09:C (3.36) BS01 VEI N/A N/A A0A0M4ME80 39887940
    841406 8k0e:A (3.65) BS01 FE N/A GO:0005506 ... Q32P28 39245686
    841407 8k0f:A (3.37) BS01 FE N/A GO:0005506 ... Q32P28 39245686
    841408 8k0g:A (3.8) BS01 peptide N/A N/A P35998 N/A
    841409 8k0g:A (3.8) BS02 ATP N/A N/A P35998 N/A
    841410 8k0g:B (3.8) BS01 peptide N/A N/A P62191 N/A
    841411 8k0g:B (3.8) BS02 ATP N/A N/A P62191 N/A
    841412 8k0g:C (3.8) BS01 peptide N/A N/A P62195 N/A
    841413 8k0g:C (3.8) BS02 ATP N/A N/A P62195 N/A
    841414 8k0g:C (3.8) BS03 ADP N/A N/A P62195 N/A
    841415 8k0g:D (3.8) BS01 peptide N/A N/A P43686 N/A
    841416 8k0g:D (3.8) BS02 ADP N/A N/A P43686 N/A
    841417 8k0g:F (3.8) BS01 ATP N/A N/A P17980 N/A
    841418 8k0k:A (2.995) BS01 rna N/A N/A M1R2X3 38977786
    841419 8k0k:B (2.995) BS01 rna N/A N/A M1QWL5 38977786
    841420 8k0k:C (2.995) BS01 rna N/A N/A M1Q7R8 38977786
    841421 8k0k:D (2.995) BS01 rna N/A N/A M1Q7R8 38977786
    841422 8k0k:E (2.995) BS01 rna N/A N/A M1Q7R8 38977786
    841423 8k0k:F (2.995) BS01 rna N/A N/A M1Q7R8 38977786
    841424 8k0k:G (2.995) BS01 rna N/A N/A M1Q7R8 38977786
    841425 8k0k:H (2.995) BS01 rna N/A N/A M1Q7R8 38977786
    841426 8k0k:I (2.995) BS01 rna N/A GO:0004519 ... M1R9H3 38977786
    841427 8k0m:A (3.17) BS01 FE N/A GO:0005506 ... Q32P28 39245686
    841428 8k0m:A (3.17) BS02 AKG N/A GO:0005506 ... Q32P28 39245686
    841429 8k14:A (1.28) BS01 VFI ? N/A O60885 37992518
    841430 8k16:A (3.1) BS01 ATP ? GO:0005515 ... O32080 38719864
    841431 8k16:B (3.1) BS01 ATP ? GO:0005515 ... O32080 38719864
    841432 8k17:A (3.18) BS01 FE N/A GO:0005506 ... Q32P28 39245686
    841433 8k17:B (3.18) BS01 peptide N/A N/A O75718 39245686
    841434 8k1g:A (2.09) BS01 ZN 1.1.1.6 GO:0000166 ... A6TGD6 N/A
    841435 8k1h:A (2.1) BS01 ZN 1.1.1.6 GO:0000166 ... A6TGD6 N/A
    841436 8k1h:A (2.1) BS02 NAD 1.1.1.6 GO:0000166 ... A6TGD6 N/A
    841437 8k1j:A (3.0) BS01 Y01 ? GO:0005267 ... Q9NPC2 38630723
    841438 8k1j:A (3.0) BS02 K ? GO:0005267 ... Q9NPC2 38630723
    841439 8k1j:A (3.0) BS03 K ? GO:0005267 ... Q9NPC2 38630723
    841440 8k1j:A (3.0) BS04 K ? GO:0005267 ... Q9NPC2 38630723
    841441 8k1j:A (3.0) BS05 K ? GO:0005267 ... Q9NPC2 38630723
    841442 8k1j:B (3.0) BS01 Y01 ? GO:0005267 ... Q9NPC2 38630723
    841443 8k1j:B (3.0) BS02 K ? GO:0005267 ... Q9NPC2 38630723
    841444 8k1j:B (3.0) BS03 K ? GO:0005267 ... Q9NPC2 38630723
    841445 8k1j:B (3.0) BS04 K ? GO:0005267 ... Q9NPC2 38630723
    841446 8k1j:B (3.0) BS05 K ? GO:0005267 ... Q9NPC2 38630723
    841447 8k1j:B (3.0) BS06 Y01 ? GO:0005267 ... Q9NPC2 38630723
    841448 8k1j:B (3.0) BS07 Y01 ? GO:0005267 ... Q9NPC2 38630723
    841449 8k1k:A (3.0) BS01 ATP ? GO:0005515 ... O32080 38719864
    841450 8k1k:B (3.0) BS01 ATP ? GO:0005515 ... O32080 38719864
    841451 8k1l:A (3.44) BS01 ALF 7.2.2.13 GO:0000166 ... P17326 38079564
    841452 8k1n:C (3.0) BS01 RFP N/A GO:0005886 ... O05318 39226350
    841453 8k1o:B (2.9) BS01 ANP N/A GO:0005524 ... O86311 39226350
    841454 8k1o:B (2.9) BS02 ANP N/A GO:0005524 ... O86311 39226350
    841455 8k1o:C (2.9) BS01 ANP N/A GO:0005524 ... O86311 39226350
    841456 8k1o:C (2.9) BS02 ANP N/A GO:0005524 ... O86311 39226350
    841457 8k1p:B (3.4) BS01 ADP N/A GO:0005524 ... O86311 N/A
    841458 8k1p:B (3.4) BS02 ATP N/A GO:0005524 ... O86311 N/A
    841459 8k1p:C (3.4) BS01 ATP N/A GO:0005524 ... O86311 N/A
    841460 8k1q:A (3.68) BS01 Y01 ? GO:0005267 ... Q9NPC2 38630723
    841461 8k1q:A (3.68) BS02 Y01 ? GO:0005267 ... Q9NPC2 38630723
    841462 8k1q:A (3.68) BS03 Y01 ? GO:0005267 ... Q9NPC2 38630723
    841463 8k1q:A (3.68) BS04 K ? GO:0005267 ... Q9NPC2 38630723
    841464 8k1q:A (3.68) BS05 K ? GO:0005267 ... Q9NPC2 38630723
    841465 8k1q:B (3.68) BS01 K ? GO:0005267 ... Q9NPC2 38630723
    841466 8k1q:B (3.68) BS02 K ? GO:0005267 ... Q9NPC2 38630723
    841467 8k1q:B (3.68) BS03 Y01 ? GO:0005267 ... Q9NPC2 38630723
    841468 8k1q:B (3.68) BS04 Y01 ? GO:0005267 ... Q9NPC2 38630723
    841469 8k1q:B (3.68) BS05 Y01 ? GO:0005267 ... Q9NPC2 38630723
    841470 8k1s:A (2.83) BS01 ADP ? GO:0005515 ... O32080 38719864
    841471 8k1s:B (2.83) BS01 ADP ? GO:0005515 ... O32080 38719864
    841472 8k1s:C (2.83) BS01 ADP ? GO:0005515 ... O32080 38719864
    841473 8k1s:D (2.83) BS01 ADP ? GO:0005515 ... O32080 38719864
    841474 8k1s:E (2.83) BS01 ADP ? GO:0005515 ... O32080 38719864
    841475 8k1s:F (2.83) BS01 ADP ? GO:0005515 ... O32080 38719864
    841476 8k1s:G (2.83) BS01 ADP ? GO:0005515 ... O32080 38719864
    841477 8k1s:H (2.83) BS01 ADP ? GO:0005515 ... O32080 38719864
    841478 8k1t:A (2.48) BS01 ATP ? GO:0005515 ... O32080 38719864
    841479 8k1t:B (2.48) BS01 ATP ? GO:0005515 ... O32080 38719864
    841480 8k1t:C (2.48) BS01 ATP ? GO:0005515 ... O32080 38719864
    841481 8k1t:D (2.48) BS01 ATP ? GO:0005515 ... O32080 38719864
    841482 8k1t:E (2.48) BS01 ATP ? GO:0005515 ... O32080 38719864
    841483 8k1t:F (2.48) BS01 ATP ? GO:0005515 ... O32080 38719864
    841484 8k1t:G (2.48) BS01 ATP ? GO:0005515 ... O32080 38719864
    841485 8k1t:H (2.48) BS01 ATP ? GO:0005515 ... O32080 38719864
    841486 8k1u:A (2.82) BS01 ATP ? GO:0005515 ... O32080 38719864
    841487 8k1u:B (2.82) BS01 ATP ? GO:0005515 ... O32080 38719864
    841488 8k1u:C (2.82) BS01 ATP ? GO:0005515 ... O32080 38719864
    841489 8k1u:D (2.82) BS01 ATP ? GO:0005515 ... O32080 38719864
    841490 8k1u:E (2.82) BS01 ATP ? GO:0005515 ... O32080 38719864
    841491 8k1u:F (2.82) BS01 ATP ? GO:0005515 ... O32080 38719864
    841492 8k1u:G (2.82) BS01 ATP ? GO:0005515 ... O32080 38719864
    841493 8k1u:H (2.82) BS01 ATP ? GO:0005515 ... O32080 38719864
    841494 8k1v:A (3.48) BS01 Y01 ? GO:0005267 ... Q9NPC2 38630723
    841495 8k1v:A (3.48) BS02 Y01 ? GO:0005267 ... Q9NPC2 38630723
    841496 8k1v:A (3.48) BS03 K ? GO:0005267 ... Q9NPC2 38630723
    841497 8k1v:A (3.48) BS04 K ? GO:0005267 ... Q9NPC2 38630723
    841498 8k1v:A (3.48) BS05 K ? GO:0005267 ... Q9NPC2 38630723
    841499 8k1v:A (3.48) BS06 K ? GO:0005267 ... Q9NPC2 38630723
    841500 8k1v:B (3.48) BS01 K ? GO:0005267 ... Q9NPC2 38630723
    841501 8k1v:B (3.48) BS02 K ? GO:0005267 ... Q9NPC2 38630723
    841502 8k1v:B (3.48) BS03 K ? GO:0005267 ... Q9NPC2 38630723
    841503 8k1v:B (3.48) BS04 K ? GO:0005267 ... Q9NPC2 38630723
    841504 8k1v:B (3.48) BS05 Y01 ? GO:0005267 ... Q9NPC2 38630723
    841505 8k1x:A (2.27) BS01 HEM N/A GO:0004497 ... W5R4Y8 N/A
    841506 8k1x:A (2.27) BS02 VI4 N/A GO:0004497 ... W5R4Y8 N/A
    841507 8k1x:A (2.27) BS03 VI4 N/A GO:0004497 ... W5R4Y8 N/A
    841508 8k1x:B (2.27) BS01 HEM N/A GO:0004497 ... W5R4Y8 N/A
    841509 8k1x:B (2.27) BS02 VI4 N/A GO:0004497 ... W5R4Y8 N/A
    841510 8k1x:B (2.27) BS03 VI4 N/A GO:0004497 ... W5R4Y8 N/A
    841511 8k1x:B (2.27) BS04 VI4 N/A GO:0004497 ... W5R4Y8 N/A
    841512 8k1x:C (2.27) BS01 HEM N/A GO:0004497 ... W5R4Y8 N/A
    841513 8k1x:C (2.27) BS02 VI4 N/A GO:0004497 ... W5R4Y8 N/A
    841514 8k1y:A (2.15) BS01 VAL N/A GO:0003677 ... P02768 38263542
    841515 8k1z:A (3.41) BS01 Y01 ? GO:0005267 ... Q9NPC2 38630723
    841516 8k1z:A (3.41) BS02 Y01 ? GO:0005267 ... Q9NPC2 38630723
    841517 8k1z:A (3.41) BS03 K ? GO:0005267 ... Q9NPC2 38630723
    841518 8k1z:A (3.41) BS04 K ? GO:0005267 ... Q9NPC2 38630723
    841519 8k1z:A (3.41) BS05 K ? GO:0005267 ... Q9NPC2 38630723
    841520 8k1z:A (3.41) BS06 K ? GO:0005267 ... Q9NPC2 38630723
    841521 8k1z:B (3.41) BS01 K ? GO:0005267 ... Q9NPC2 38630723
    841522 8k1z:B (3.41) BS02 K ? GO:0005267 ... Q9NPC2 38630723
    841523 8k1z:B (3.41) BS03 K ? GO:0005267 ... Q9NPC2 38630723
    841524 8k1z:B (3.41) BS04 Y01 ? GO:0005267 ... Q9NPC2 38630723
    841525 8k1z:B (3.41) BS05 Y01 ? GO:0005267 ... Q9NPC2 38630723
    841526 8k1z:B (3.41) BS06 K ? GO:0005267 ... Q9NPC2 38630723
    841527 8k20:A (3.7) BS01 FE 2.3.1.234 GO:0000408 ... O49653 38477398
    841528 8k21:D (3.8) BS01 dna N/A GO:0003676 ... F1D5W0 N/A
    841529 8k21:E (3.8) BS01 dna N/A GO:0003676 ... F1D5W0 N/A
    841530 8k21:E (3.8) BS02 dna N/A GO:0003676 ... F1D5W0 N/A
    841531 8k21:a (3.8) BS01 dna N/A N/A F1D5V9 N/A
    841532 8k21:d (3.8) BS01 dna N/A GO:0003676 ... F1D5W0 N/A
    841533 8k21:e (3.8) BS01 dna N/A GO:0003676 ... F1D5W0 N/A
    841534 8k22:A (2.92) BS01 dna N/A GO:0004386 ... F1D5V9 N/A
    841535 8k22:A (2.92) BS02 dna N/A GO:0004386 ... F1D5V9 N/A
    841536 8k22:A (2.92) BS03 MN N/A GO:0004386 ... F1D5V9 N/A
    841537 8k22:A (2.92) BS04 MN N/A GO:0004386 ... F1D5V9 N/A
    841538 8k22:B (2.92) BS01 rna N/A N/A F1D5V8 N/A
    841539 8k22:B (2.92) BS02 dna N/A N/A F1D5V8 N/A
    841540 8k22:B (2.92) BS03 dna N/A N/A F1D5V8 N/A
    841541 8k22:C (2.92) BS01 rna N/A N/A F1D5V7 N/A
    841542 8k22:C (2.92) BS02 dna N/A N/A F1D5V7 N/A
    841543 8k22:C (2.92) BS03 dna N/A N/A F1D5V7 N/A
    841544 8k22:D (2.92) BS01 dna N/A GO:0003676 ... F1D5W0 N/A
    841545 8k22:E (2.92) BS01 dna N/A GO:0003676 ... F1D5W0 N/A
    841546 8k22:E (2.92) BS02 dna N/A GO:0003676 ... F1D5W0 N/A
    841547 8k22:G (2.92) BS01 rna N/A N/A F1D5V6 N/A
    841548 8k22:G (2.92) BS02 dna N/A N/A F1D5V6 N/A
    841549 8k22:H (2.92) BS01 rna N/A GO:0004519 ... F1D5V5 N/A
    841550 8k22:I (2.92) BS01 rna N/A N/A F1D5V6 N/A
    841551 8k22:I (2.92) BS02 dna N/A N/A F1D5V6 N/A
    841552 8k22:J (2.92) BS01 rna N/A N/A F1D5V6 N/A
    841553 8k22:J (2.92) BS02 dna N/A N/A F1D5V6 N/A
    841554 8k22:K (2.92) BS01 rna N/A N/A F1D5V6 N/A
    841555 8k22:K (2.92) BS02 dna N/A N/A F1D5V6 N/A
    841556 8k22:K (2.92) BS03 dna N/A N/A F1D5V6 N/A
    841557 8k22:L (2.92) BS01 rna N/A N/A F1D5V6 N/A
    841558 8k22:L (2.92) BS02 dna N/A N/A F1D5V6 N/A
    841559 8k22:M (2.92) BS01 rna N/A N/A F1D5V6 N/A
    841560 8k22:M (2.92) BS02 dna N/A N/A F1D5V6 N/A
    841561 8k22:a (2.92) BS01 dna N/A GO:0004386 ... F1D5V9 N/A
    841562 8k22:d (2.92) BS01 dna N/A GO:0003676 ... F1D5W0 N/A
    841563 8k22:e (2.92) BS01 dna N/A GO:0003676 ... F1D5W0 N/A
    841564 8k23:A (3.75) BS01 dna N/A GO:0004386 ... F1D5V9 N/A
    841565 8k23:A (3.75) BS02 dna N/A GO:0004386 ... F1D5V9 N/A
    841566 8k23:A (3.75) BS03 MN N/A GO:0004386 ... F1D5V9 N/A
    841567 8k23:A (3.75) BS04 MN N/A GO:0004386 ... F1D5V9 N/A
    841568 8k23:B (3.75) BS01 rna N/A N/A F1D5V8 N/A
    841569 8k23:B (3.75) BS02 dna N/A N/A F1D5V8 N/A
    841570 8k23:B (3.75) BS03 dna N/A N/A F1D5V8 N/A
    841571 8k23:C (3.75) BS01 rna N/A N/A F1D5V7 N/A
    841572 8k23:C (3.75) BS02 dna N/A N/A F1D5V7 N/A
    841573 8k23:C (3.75) BS03 dna N/A N/A F1D5V7 N/A
    841574 8k23:D (3.75) BS01 dna N/A GO:0003676 ... F1D5W0 N/A
    841575 8k23:E (3.75) BS01 dna N/A GO:0003676 ... F1D5W0 N/A
    841576 8k23:E (3.75) BS02 dna N/A GO:0003676 ... F1D5W0 N/A
    841577 8k23:G (3.75) BS01 rna N/A N/A F1D5V6 N/A
    841578 8k23:G (3.75) BS02 dna N/A N/A F1D5V6 N/A
    841579 8k23:H (3.75) BS01 rna N/A GO:0004519 ... F1D5V5 N/A
    841580 8k23:I (3.75) BS01 rna N/A N/A F1D5V6 N/A
    841581 8k23:I (3.75) BS02 dna N/A N/A F1D5V6 N/A
    841582 8k23:J (3.75) BS01 rna N/A N/A F1D5V6 N/A
    841583 8k23:J (3.75) BS02 dna N/A N/A F1D5V6 N/A
    841584 8k23:K (3.75) BS01 rna N/A N/A F1D5V6 N/A
    841585 8k23:K (3.75) BS02 dna N/A N/A F1D5V6 N/A
    841586 8k23:K (3.75) BS03 dna N/A N/A F1D5V6 N/A
    841587 8k23:L (3.75) BS01 rna N/A N/A F1D5V6 N/A
    841588 8k23:L (3.75) BS02 dna N/A N/A F1D5V6 N/A
    841589 8k23:M (3.75) BS01 rna N/A N/A F1D5V6 N/A
    841590 8k23:M (3.75) BS02 dna N/A N/A F1D5V6 N/A
    841591 8k23:a (3.75) BS01 dna N/A GO:0004386 ... F1D5V9 N/A
    841592 8k23:a (3.75) BS02 dna N/A GO:0004386 ... F1D5V9 N/A
    841593 8k23:a (3.75) BS03 MN N/A GO:0004386 ... F1D5V9 N/A
    841594 8k23:a (3.75) BS04 MN N/A GO:0004386 ... F1D5V9 N/A
    841595 8k23:b (3.75) BS01 rna N/A N/A F1D5V8 N/A
    841596 8k23:b (3.75) BS02 dna N/A N/A F1D5V8 N/A
    841597 8k23:b (3.75) BS03 dna N/A N/A F1D5V8 N/A
    841598 8k23:c (3.75) BS01 rna N/A N/A F1D5V7 N/A
    841599 8k23:c (3.75) BS02 dna N/A N/A F1D5V7 N/A
    841600 8k23:c (3.75) BS03 dna N/A N/A F1D5V7 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).