SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    841601 8k23:d (3.75) BS01 dna N/A GO:0003676 ... F1D5W0 N/A
    841602 8k23:e (3.75) BS01 dna N/A GO:0003676 ... F1D5W0 N/A
    841603 8k23:g (3.75) BS01 rna N/A N/A F1D5V6 N/A
    841604 8k23:g (3.75) BS02 dna N/A N/A F1D5V6 N/A
    841605 8k23:h (3.75) BS01 rna N/A GO:0004519 ... F1D5V5 N/A
    841606 8k23:i (3.75) BS01 rna N/A N/A F1D5V6 N/A
    841607 8k23:i (3.75) BS02 dna N/A N/A F1D5V6 N/A
    841608 8k23:j (3.75) BS01 rna N/A N/A F1D5V6 N/A
    841609 8k23:j (3.75) BS02 dna N/A N/A F1D5V6 N/A
    841610 8k23:k (3.75) BS01 rna N/A N/A F1D5V6 N/A
    841611 8k23:k (3.75) BS02 dna N/A N/A F1D5V6 N/A
    841612 8k23:k (3.75) BS03 dna N/A N/A F1D5V6 N/A
    841613 8k23:l (3.75) BS01 rna N/A N/A F1D5V6 N/A
    841614 8k23:l (3.75) BS02 dna N/A N/A F1D5V6 N/A
    841615 8k23:m (3.75) BS01 rna N/A N/A F1D5V6 N/A
    841616 8k23:m (3.75) BS02 dna N/A N/A F1D5V6 N/A
    841617 8k24:A (3.72) BS01 dna N/A GO:0004386 ... F1D5V9 N/A
    841618 8k24:A (3.72) BS02 dna N/A GO:0004386 ... F1D5V9 N/A
    841619 8k24:A (3.72) BS03 MN N/A GO:0004386 ... F1D5V9 N/A
    841620 8k24:A (3.72) BS04 MN N/A GO:0004386 ... F1D5V9 N/A
    841621 8k24:B (3.72) BS01 rna N/A N/A F1D5V8 N/A
    841622 8k24:B (3.72) BS02 dna N/A N/A F1D5V8 N/A
    841623 8k24:B (3.72) BS03 dna N/A N/A F1D5V8 N/A
    841624 8k24:C (3.72) BS01 rna N/A N/A F1D5V7 N/A
    841625 8k24:C (3.72) BS02 dna N/A N/A F1D5V7 N/A
    841626 8k24:C (3.72) BS03 dna N/A N/A F1D5V7 N/A
    841627 8k24:D (3.72) BS01 dna N/A GO:0003676 ... F1D5W0 N/A
    841628 8k24:E (3.72) BS01 dna N/A GO:0003676 ... F1D5W0 N/A
    841629 8k24:E (3.72) BS02 dna N/A GO:0003676 ... F1D5W0 N/A
    841630 8k24:G (3.72) BS01 rna N/A N/A F1D5V6 N/A
    841631 8k24:G (3.72) BS02 dna N/A N/A F1D5V6 N/A
    841632 8k24:H (3.72) BS01 rna N/A GO:0004519 ... F1D5V5 N/A
    841633 8k24:I (3.72) BS01 rna N/A N/A F1D5V6 N/A
    841634 8k24:I (3.72) BS02 dna N/A N/A F1D5V6 N/A
    841635 8k24:J (3.72) BS01 rna N/A N/A F1D5V6 N/A
    841636 8k24:J (3.72) BS02 dna N/A N/A F1D5V6 N/A
    841637 8k24:K (3.72) BS01 rna N/A N/A F1D5V6 N/A
    841638 8k24:K (3.72) BS02 dna N/A N/A F1D5V6 N/A
    841639 8k24:K (3.72) BS03 dna N/A N/A F1D5V6 N/A
    841640 8k24:L (3.72) BS01 rna N/A N/A F1D5V6 N/A
    841641 8k24:L (3.72) BS02 dna N/A N/A F1D5V6 N/A
    841642 8k24:M (3.72) BS01 rna N/A N/A F1D5V6 N/A
    841643 8k24:M (3.72) BS02 dna N/A N/A F1D5V6 N/A
    841644 8k24:a (3.72) BS01 dna N/A GO:0004386 ... F1D5V9 N/A
    841645 8k24:a (3.72) BS02 dna N/A GO:0004386 ... F1D5V9 N/A
    841646 8k24:a (3.72) BS03 dna N/A GO:0004386 ... F1D5V9 N/A
    841647 8k24:a (3.72) BS04 MN N/A GO:0004386 ... F1D5V9 N/A
    841648 8k24:a (3.72) BS05 MN N/A GO:0004386 ... F1D5V9 N/A
    841649 8k24:b (3.72) BS01 rna N/A N/A F1D5V8 N/A
    841650 8k24:b (3.72) BS02 dna N/A N/A F1D5V8 N/A
    841651 8k24:b (3.72) BS03 dna N/A N/A F1D5V8 N/A
    841652 8k24:c (3.72) BS01 rna N/A N/A F1D5V7 N/A
    841653 8k24:c (3.72) BS02 dna N/A N/A F1D5V7 N/A
    841654 8k24:c (3.72) BS03 dna N/A N/A F1D5V7 N/A
    841655 8k24:d (3.72) BS01 dna N/A GO:0003676 ... F1D5W0 N/A
    841656 8k24:e (3.72) BS01 dna N/A GO:0003676 ... F1D5W0 N/A
    841657 8k24:g (3.72) BS01 rna N/A N/A F1D5V6 N/A
    841658 8k24:g (3.72) BS02 dna N/A N/A F1D5V6 N/A
    841659 8k24:h (3.72) BS01 rna N/A GO:0004519 ... F1D5V5 N/A
    841660 8k24:i (3.72) BS01 rna N/A N/A F1D5V6 N/A
    841661 8k24:i (3.72) BS02 dna N/A N/A F1D5V6 N/A
    841662 8k24:j (3.72) BS01 rna N/A N/A F1D5V6 N/A
    841663 8k24:j (3.72) BS02 dna N/A N/A F1D5V6 N/A
    841664 8k24:k (3.72) BS01 rna N/A N/A F1D5V6 N/A
    841665 8k24:k (3.72) BS02 dna N/A N/A F1D5V6 N/A
    841666 8k24:k (3.72) BS03 dna N/A N/A F1D5V6 N/A
    841667 8k24:l (3.72) BS01 rna N/A N/A F1D5V6 N/A
    841668 8k24:l (3.72) BS02 dna N/A N/A F1D5V6 N/A
    841669 8k24:m (3.72) BS01 rna N/A N/A F1D5V6 N/A
    841670 8k24:m (3.72) BS02 dna N/A N/A F1D5V6 N/A
    841671 8k25:A (3.4) BS01 dna N/A N/A F1D5V9 N/A
    841672 8k25:A (3.4) BS02 dna N/A N/A F1D5V9 N/A
    841673 8k25:a (3.4) BS01 dna N/A N/A F1D5V9 N/A
    841674 8k25:d (3.4) BS01 dna N/A GO:0003676 ... F1D5W0 N/A
    841675 8k27:A (3.6) BS01 rna N/A N/A F1D5V8 N/A
    841676 8k27:A (3.6) BS02 dna N/A N/A F1D5V8 N/A
    841677 8k27:A (3.6) BS03 dna N/A N/A F1D5V8 N/A
    841678 8k27:B (3.6) BS01 rna N/A N/A F1D5V7 N/A
    841679 8k27:B (3.6) BS02 dna N/A N/A F1D5V7 N/A
    841680 8k27:B (3.6) BS03 dna N/A N/A F1D5V7 N/A
    841681 8k27:C (3.6) BS01 rna N/A N/A F1D5V6 N/A
    841682 8k27:C (3.6) BS02 dna N/A N/A F1D5V6 N/A
    841683 8k27:D (3.6) BS01 rna N/A N/A F1D5V6 N/A
    841684 8k27:D (3.6) BS02 dna N/A N/A F1D5V6 N/A
    841685 8k27:E (3.6) BS01 rna N/A N/A F1D5V6 N/A
    841686 8k27:E (3.6) BS02 dna N/A N/A F1D5V6 N/A
    841687 8k27:F (3.6) BS01 rna N/A N/A F1D5V6 N/A
    841688 8k27:F (3.6) BS02 dna N/A N/A F1D5V6 N/A
    841689 8k27:G (3.6) BS01 rna N/A N/A F1D5V6 N/A
    841690 8k27:G (3.6) BS02 dna N/A N/A F1D5V6 N/A
    841691 8k27:H (3.6) BS01 rna N/A N/A F1D5V6 N/A
    841692 8k27:H (3.6) BS02 dna N/A N/A F1D5V6 N/A
    841693 8k27:I (3.6) BS01 rna N/A GO:0004519 ... F1D5V5 N/A
    841694 8k28:A (3.54) BS01 dna N/A N/A F1D5V8 N/A
    841695 8k28:A (3.54) BS02 dna N/A N/A F1D5V8 N/A
    841696 8k28:A (3.54) BS03 rna N/A N/A F1D5V8 N/A
    841697 8k28:B (3.54) BS01 dna N/A N/A F1D5V7 N/A
    841698 8k28:B (3.54) BS02 dna N/A N/A F1D5V7 N/A
    841699 8k28:B (3.54) BS03 rna N/A N/A F1D5V7 N/A
    841700 8k28:C (3.54) BS01 dna N/A N/A F1D5V6 N/A
    841701 8k28:C (3.54) BS02 rna N/A N/A F1D5V6 N/A
    841702 8k28:D (3.54) BS01 dna N/A N/A F1D5V6 N/A
    841703 8k28:D (3.54) BS02 rna N/A N/A F1D5V6 N/A
    841704 8k28:E (3.54) BS01 dna N/A N/A F1D5V6 N/A
    841705 8k28:E (3.54) BS02 rna N/A N/A F1D5V6 N/A
    841706 8k28:F (3.54) BS01 rna N/A N/A F1D5V6 N/A
    841707 8k28:G (3.54) BS01 rna N/A N/A F1D5V6 N/A
    841708 8k28:H (3.54) BS01 rna N/A N/A F1D5V6 N/A
    841709 8k28:I (3.54) BS01 rna N/A GO:0004519 ... F1D5V5 N/A
    841710 8k29:A (3.18) BS01 rna N/A N/A F1D5V8 N/A
    841711 8k29:A (3.18) BS02 dna N/A N/A F1D5V8 N/A
    841712 8k29:A (3.18) BS03 dna N/A N/A F1D5V8 N/A
    841713 8k29:B (3.18) BS01 rna N/A N/A F1D5V7 N/A
    841714 8k29:B (3.18) BS02 dna N/A N/A F1D5V7 N/A
    841715 8k29:B (3.18) BS03 dna N/A N/A F1D5V7 N/A
    841716 8k29:C (3.18) BS01 rna N/A N/A F1D5V6 N/A
    841717 8k29:C (3.18) BS02 dna N/A N/A F1D5V6 N/A
    841718 8k29:D (3.18) BS01 rna N/A N/A F1D5V6 N/A
    841719 8k29:D (3.18) BS02 dna N/A N/A F1D5V6 N/A
    841720 8k29:E (3.18) BS01 rna N/A N/A F1D5V6 N/A
    841721 8k29:E (3.18) BS02 dna N/A N/A F1D5V6 N/A
    841722 8k29:F (3.18) BS01 rna N/A N/A F1D5V6 N/A
    841723 8k29:F (3.18) BS02 dna N/A N/A F1D5V6 N/A
    841724 8k29:G (3.18) BS01 rna N/A N/A F1D5V6 N/A
    841725 8k29:G (3.18) BS02 dna N/A N/A F1D5V6 N/A
    841726 8k29:H (3.18) BS01 rna N/A N/A F1D5V6 N/A
    841727 8k29:H (3.18) BS02 dna N/A N/A F1D5V6 N/A
    841728 8k29:I (3.18) BS01 rna N/A GO:0004519 ... F1D5V5 N/A
    841729 8k2a:L4 (2.9) BS01 rna N/A GO:0003723 ... Q6P161 38942792
    841730 8k2a:L6 (2.9) BS01 rna N/A GO:0003735 ... Q9BQC6 38942792
    841731 8k2a:L8 (2.9) BS01 rna N/A GO:0005515 ... Q8TAE8 38942792
    841732 8k2a:LB (2.9) BS01 rna N/A GO:0003723 ... Q5T653 38942792
    841733 8k2a:LB (2.9) BS02 MG N/A GO:0003723 ... Q5T653 38942792
    841734 8k2a:LC (2.9) BS01 rna N/A GO:0003723 ... P09001 38942792
    841735 8k2a:LD (2.9) BS01 rna N/A GO:0003723 ... Q9BYD3 38942792
    841736 8k2a:LI (2.9) BS01 rna N/A GO:0003723 ... Q9BYD2 38942792
    841737 8k2a:LJ (2.9) BS01 rna N/A GO:0003723 ... Q7Z7H8 38942792
    841738 8k2a:LK (2.9) BS01 rna N/A GO:0003723 ... Q9Y3B7 38942792
    841739 8k2a:LM (2.9) BS01 rna N/A GO:0003723 ... Q9BYD1 38942792
    841740 8k2a:LN (2.9) BS01 rna N/A GO:0003723 ... Q6P1L8 38942792
    841741 8k2a:LN (2.9) BS02 rna N/A GO:0003723 ... Q6P1L8 38942792
    841742 8k2a:LO (2.9) BS01 rna N/A GO:0003723 ... Q9P015 38942792
    841743 8k2a:LP (2.9) BS01 rna N/A GO:0003735 ... Q9NX20 38942792
    841744 8k2a:LP (2.9) BS02 MG N/A GO:0003735 ... Q9NX20 38942792
    841745 8k2a:LQ (2.9) BS01 rna N/A GO:0003735 ... Q9NRX2 38942792
    841746 8k2a:LR (2.9) BS01 rna N/A GO:0003723 ... Q9H0U6 38942792
    841747 8k2a:LR (2.9) BS02 rna N/A GO:0003723 ... Q9H0U6 38942792
    841748 8k2a:LS (2.9) BS01 rna N/A GO:0003735 ... P49406 38942792
    841749 8k2a:LT (2.9) BS01 rna N/A GO:0003723 ... Q9BYC9 38942792
    841750 8k2a:LU (2.9) BS01 rna N/A GO:0003723 ... Q7Z2W9 38942792
    841751 8k2a:LV (2.9) BS01 rna N/A GO:0003735 ... Q9NWU5 38942792
    841752 8k2a:LW (2.9) BS01 rna N/A GO:0001650 ... Q16540 38942792
    841753 8k2a:LX (2.9) BS01 rna N/A GO:0003723 ... Q96A35 38942792
    841754 8k2a:La (2.9) BS01 rna N/A GO:0003723 ... Q9P0M9 38942792
    841755 8k2a:Lb (2.9) BS01 rna N/A GO:0003723 ... Q13084 38942792
    841756 8k2a:Ld (2.9) BS01 rna N/A GO:0003735 ... Q8TCC3 38942792
    841757 8k2a:Lf (2.9) BS01 rna N/A GO:0003723 ... Q9BYC8 38942792
    841758 8k2a:Lf (2.9) BS02 ZN N/A GO:0003723 ... Q9BYC8 38942792
    841759 8k2a:Lg (2.9) BS01 rna N/A GO:0003735 ... O75394 38942792
    841760 8k2a:Lh (2.9) BS01 rna N/A GO:0003735 ... Q9BQ48 38942792
    841761 8k2a:Li (2.9) BS01 rna N/A GO:0003735 ... Q9NZE8 38942792
    841762 8k2a:Lj (2.9) BS01 rna N/A GO:0003735 ... Q9P0J6 38942792
    841763 8k2a:Lj (2.9) BS02 ZN N/A GO:0003735 ... Q9P0J6 38942792
    841764 8k2a:Lk (2.9) BS01 rna N/A GO:0003723 ... Q9BZE1 38942792
    841765 8k2a:Ll (2.9) BS01 rna N/A GO:0005515 ... Q96DV4 38942792
    841766 8k2a:Ll (2.9) BS02 rna N/A GO:0005515 ... Q96DV4 38942792
    841767 8k2a:Ln (2.9) BS01 rna N/A GO:0003723 ... Q9NQ50 38942792
    841768 8k2a:Lo (2.9) BS01 rna N/A GO:0003723 ... Q8IXM3 38942792
    841769 8k2a:Lp (2.9) BS01 rna N/A GO:0003723 ... Q9Y6G3 38942792
    841770 8k2a:Lq (2.9) BS01 rna N/A GO:0003723 ... Q8N983 38942792
    841771 8k2a:Lr (2.9) BS01 rna N/A GO:0003723 ... Q9H9J2 38942792
    841772 8k2a:Lu (2.9) BS01 rna N/A GO:0003735 ... Q9HD33 38942792
    841773 8k2a:Lv (2.9) BS01 rna N/A GO:0005515 ... Q96GC5 38942792
    841774 8k2a:Lv (2.9) BS02 rna N/A GO:0005515 ... Q96GC5 38942792
    841775 8k2a:Lw (2.9) BS01 rna N/A GO:0003735 ... Q13405 38942792
    841776 8k2a:Ly (2.9) BS01 rna N/A GO:0003735 ... Q4U2R6 38942792
    841777 8k2a:Lz (2.9) BS01 rna N/A GO:0003735 ... A8K7J6 38942792
    841778 8k2a:SB (2.9) BS01 rna N/A GO:0003735 ... Q9Y399 38942792
    841779 8k2a:SB (2.9) BS02 ZN N/A GO:0003735 ... Q9Y399 38942792
    841780 8k2a:SE (2.9) BS01 rna N/A GO:0003723 ... P82675 38942792
    841781 8k2a:SF (2.9) BS01 rna N/A GO:0003735 ... P82932 38942792
    841782 8k2a:SG (2.9) BS01 rna N/A GO:0000028 ... Q9Y2R9 38942792
    841783 8k2a:SI (2.9) BS01 rna N/A GO:0003723 ... P82933 38942792
    841784 8k2a:SJ (2.9) BS01 rna N/A GO:0005739 ... P82664 38942792
    841785 8k2a:SK (2.9) BS01 rna N/A GO:0003723 ... P82912 38942792
    841786 8k2a:SL (2.9) BS01 rna N/A GO:0003723 ... O15235 38942792
    841787 8k2a:SN (2.9) BS01 rna N/A GO:0003723 ... O60783 38942792
    841788 8k2a:SO (2.9) BS01 rna N/A GO:0003723 ... P82914 38942792
    841789 8k2a:SP (2.9) BS01 rna N/A GO:0003735 ... Q9Y3D3 38942792
    841790 8k2a:SQ (2.9) BS01 rna N/A GO:0003735 ... Q9Y2R5 38942792
    841791 8k2a:SR (2.9) BS01 rna N/A GO:0003735 ... Q9NVS2 38942792
    841792 8k2a:SS (2.9) BS01 rna N/A GO:0003735 ... Q9Y676 38942792
    841793 8k2a:SS (2.9) BS02 ZN N/A GO:0003735 ... Q9Y676 38942792
    841794 8k2a:ST (2.9) BS01 rna N/A GO:0003735 ... Q9Y3D5 38942792
    841795 8k2a:ST (2.9) BS02 ZN N/A GO:0003735 ... Q9Y3D5 38942792
    841796 8k2a:SW (2.9) BS01 rna N/A GO:0003723 ... P82921 38942792
    841797 8k2a:SY (2.9) BS01 rna N/A GO:0003723 ... Q9Y3D9 38942792
    841798 8k2a:SZ (2.9) BS01 rna N/A GO:0003723 ... Q96EL2 38942792
    841799 8k2a:Sa (2.9) BS01 rna N/A GO:0003735 ... P82663 38942792
    841800 8k2a:Sa (2.9) BS02 ZN N/A GO:0003735 ... P82663 38942792

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).