SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    841801 8jh4:J (3.2) BS01 ZN ? GO:0003677 ... C4R009 37981206
    841802 8jh4:L (3.2) BS01 ZN ? GO:0003677 ... F2QMI1 37981206
    841803 8jh4:a (3.2) BS01 dna ? GO:0000776 ... P84243 37981206
    841804 8jh4:a (3.2) BS02 dna ? GO:0000776 ... P84243 37981206
    841805 8jh4:b (3.2) BS01 dna ? GO:0000781 ... P62805 37981206
    841806 8jh4:b (3.2) BS02 dna ? GO:0000781 ... P62805 37981206
    841807 8jh4:c (3.2) BS01 dna ? GO:0000786 ... P04908 37981206
    841808 8jh4:c (3.2) BS02 dna ? GO:0000786 ... P04908 37981206
    841809 8jh4:d (3.2) BS01 dna ? GO:0000786 ... P06899 37981206
    841810 8jh4:d (3.2) BS02 dna ? GO:0000786 ... P06899 37981206
    841811 8jh4:e (3.2) BS01 dna ? GO:0000776 ... P84243 37981206
    841812 8jh4:e (3.2) BS02 dna ? GO:0000776 ... P84243 37981206
    841813 8jh4:f (3.2) BS01 dna ? GO:0000781 ... P62805 37981206
    841814 8jh4:g (3.2) BS01 dna ? GO:0000786 ... P04908 37981206
    841815 8jh4:g (3.2) BS02 dna ? GO:0000786 ... P04908 37981206
    841816 8jh5:A (3.7) BS01 NPS ? GO:0005515 ... Q9C6B8 37254481
    841817 8jh5:B (3.7) BS01 NPS ? GO:0005515 ... Q9C6B8 37254481
    841818 8jh6:A (1.8) BS01 GG2 N/A N/A N/A N/A
    841819 8jh6:B (1.8) BS01 GG2 N/A N/A N/A N/A
    841820 8jh8:A (1.55) BS01 MG N/A GO:0030600 ... N/A N/A
    841821 8jh9:A (2.0) BS01 FER N/A GO:0030600 ... N/A N/A
    841822 8jhe:A (2.201) BS01 FAD N/A GO:0016491 ... N/A 37737277
    841823 8jhe:B (2.201) BS01 FAD N/A GO:0016491 ... N/A 37737277
    841824 8jhe:C (2.201) BS01 FAD N/A GO:0016491 ... N/A 37737277
    841825 8jhe:D (2.201) BS01 FAD N/A GO:0016491 ... N/A 37737277
    841826 8jhf:A (3.68) BS01 dna ? GO:0000786 ... P68431 38052811
    841827 8jhf:A (3.68) BS02 dna ? GO:0000786 ... P68431 38052811
    841828 8jhf:B (3.68) BS01 dna ? GO:0003677 ... P62805 38052811
    841829 8jhf:B (3.68) BS02 dna ? GO:0003677 ... P62805 38052811
    841830 8jhf:C (3.68) BS01 dna ? GO:0000786 ... P0C0S5 38052811
    841831 8jhf:C (3.68) BS02 dna ? GO:0000786 ... P0C0S5 38052811
    841832 8jhf:D (3.68) BS01 dna ? GO:0000786 ... O60814 38052811
    841833 8jhf:E (3.68) BS01 dna ? GO:0000786 ... P68431 38052811
    841834 8jhf:E (3.68) BS02 dna ? GO:0000786 ... P68431 38052811
    841835 8jhf:F (3.68) BS01 dna ? GO:0003677 ... P62805 38052811
    841836 8jhf:F (3.68) BS02 dna ? GO:0003677 ... P62805 38052811
    841837 8jhf:F (3.68) BS03 SAM ? GO:0003677 ... P62805 38052811
    841838 8jhf:G (3.68) BS01 dna ? GO:0000786 ... P0C0S5 38052811
    841839 8jhf:G (3.68) BS02 dna ? GO:0000786 ... P0C0S5 38052811
    841840 8jhf:H (3.68) BS01 dna ? GO:0000786 ... O60814 38052811
    841841 8jhf:K (3.68) BS01 ZN 2.1.1.361
    2.1.1.362
    GO:0042799 ... Q4FZB7 38052811
    841842 8jhf:K (3.68) BS02 SAM 2.1.1.361
    2.1.1.362
    GO:0042799 ... Q4FZB7 38052811
    841843 8jhg:A (3.58) BS01 dna ? GO:0000786 ... P68431 38052811
    841844 8jhg:A (3.58) BS02 dna ? GO:0000786 ... P68431 38052811
    841845 8jhg:B (3.58) BS01 dna ? GO:0003677 ... P62805 38052811
    841846 8jhg:B (3.58) BS02 dna ? GO:0003677 ... P62805 38052811
    841847 8jhg:C (3.58) BS01 dna ? GO:0000786 ... P04908 38052811
    841848 8jhg:C (3.58) BS02 dna ? GO:0000786 ... P04908 38052811
    841849 8jhg:D (3.58) BS01 dna ? GO:0000786 ... O60814 38052811
    841850 8jhg:E (3.58) BS01 dna ? GO:0000786 ... P68431 38052811
    841851 8jhg:E (3.58) BS02 dna ? GO:0000786 ... P68431 38052811
    841852 8jhg:F (3.58) BS01 dna ? GO:0003677 ... P62805 38052811
    841853 8jhg:G (3.58) BS01 dna ? GO:0000786 ... P04908 38052811
    841854 8jhg:H (3.58) BS01 dna ? GO:0000786 ... O60814 38052811
    841855 8jhg:K (3.58) BS01 SAM 2.1.1.361
    2.1.1.362
    GO:0042799 ... Q4FZB7 38052811
    841856 8jhl:A (2.10004) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37534597
    841857 8jhl:A (2.10004) BS02 DNU 3.6.5.2 GO:0003924 ... P01116 37534597
    841858 8jhn:D (3.75) BS01 UR9 ? GO:0001781 ... P08173
    Q8TDS4
    38431681
    841859 8jho:A (7.6) BS01 dna ? GO:0000786 ... P84233 37798513
    841860 8jho:A (7.6) BS02 dna ? GO:0000786 ... P84233 37798513
    841861 8jho:B (7.6) BS01 dna ? GO:0000786 ... P62799 37798513
    841862 8jho:B (7.6) BS02 dna ? GO:0000786 ... P62799 37798513
    841863 8jho:C (7.6) BS01 dna ? GO:0000786 ... P06897 37798513
    841864 8jho:C (7.6) BS02 dna ? GO:0000786 ... P06897 37798513
    841865 8jho:D (7.6) BS01 dna ? GO:0000786 ... P02281 37798513
    841866 8jho:D (7.6) BS02 dna ? GO:0000786 ... P02281 37798513
    841867 8jho:E (7.6) BS01 dna ? GO:0000786 ... P84233 37798513
    841868 8jho:E (7.6) BS02 dna ? GO:0000786 ... P84233 37798513
    841869 8jho:F (7.6) BS01 dna ? GO:0000786 ... P62799 37798513
    841870 8jho:G (7.6) BS01 dna ? GO:0000786 ... P06897 37798513
    841871 8jho:G (7.6) BS02 dna ? GO:0000786 ... P06897 37798513
    841872 8jho:H (7.6) BS01 dna ? GO:0000786 ... P02281 37798513
    841873 8jho:H (7.6) BS02 dna ? GO:0000786 ... P02281 37798513
    841874 8jho:K (7.6) BS01 dna ? GO:0000086 ... P22579 37798513
    841875 8jho:L (7.6) BS01 ZN 3.5.1.98 GO:0000082 ... P32561 37798513
    841876 8jho:M (7.6) BS01 dna ? GO:0000122 ... Q12432 37798513
    841877 8jho:N (7.6) BS01 ZN ? GO:0000118 ... Q04779 37798513
    841878 8jho:N (7.6) BS02 ZN ? GO:0000118 ... Q04779 37798513
    841879 8jho:N (7.6) BS03 ZN ? GO:0000118 ... Q04779 37798513
    841880 8jho:N (7.6) BS04 ZN ? GO:0000118 ... Q04779 37798513
    841881 8jho:O (7.6) BS01 dna ? GO:0000122 ... Q12432 37798513
    841882 8jho:P (7.6) BS01 ZN ? GO:0000118 ... Q04779 37798513
    841883 8jho:P (7.6) BS02 ZN ? GO:0000118 ... Q04779 37798513
    841884 8jho:a (7.6) BS01 dna ? GO:0000786 ... P84233 37798513
    841885 8jho:a (7.6) BS02 dna ? GO:0000786 ... P84233 37798513
    841886 8jho:b (7.6) BS01 dna ? GO:0000786 ... P62799 37798513
    841887 8jho:b (7.6) BS02 dna ? GO:0000786 ... P62799 37798513
    841888 8jho:c (7.6) BS01 dna ? GO:0000786 ... P06897 37798513
    841889 8jho:c (7.6) BS02 dna ? GO:0000786 ... P06897 37798513
    841890 8jho:d (7.6) BS01 dna ? GO:0000786 ... P02281 37798513
    841891 8jho:d (7.6) BS02 dna ? GO:0000786 ... P02281 37798513
    841892 8jho:e (7.6) BS01 dna ? GO:0000786 ... P84233 37798513
    841893 8jho:e (7.6) BS02 dna ? GO:0000786 ... P84233 37798513
    841894 8jho:f (7.6) BS01 dna ? GO:0000786 ... P62799 37798513
    841895 8jho:f (7.6) BS02 dna ? GO:0000786 ... P62799 37798513
    841896 8jho:g (7.6) BS01 dna ? GO:0000786 ... P06897 37798513
    841897 8jho:g (7.6) BS02 dna ? GO:0000786 ... P06897 37798513
    841898 8jho:h (7.6) BS01 dna ? GO:0000786 ... P02281 37798513
    841899 8jho:h (7.6) BS02 dna ? GO:0000786 ... P02281 37798513
    841900 8jhq:A (3.6) BS01 S1P ? GO:0022857 ... Q8IVW8
    Q9V2J8
    38123824
    841901 8jhv:A () BS01 peptide ? N/A N/A N/A
    841902 8jhv:D () BS01 peptide ? N/A N/A N/A
    841903 8jhw:A (3.12) BS01 peptide ? N/A P01901 39809366
    841904 8jhy:A (2.87) BS01 IX8 ? GO:0001781 ... Q8TDS4 37597514
    841905 8jhy:A (2.87) BS02 CLR ? GO:0001781 ... Q8TDS4 37597514
    841906 8jhz:A (3.2) BS01 ZN ? GO:0001907 ... M9ZTT7 38438396
    841907 8ji2:A (1.75) BS01 FE2 ? N/A A0A861B387 37973794
    841908 8ji2:A (1.75) BS02 67I ? N/A A0A861B387 37973794
    841909 8ji2:B (1.75) BS01 FE2 ? N/A A0A861B387 37973794
    841910 8ji2:B (1.75) BS02 67I ? N/A A0A861B387 37973794
    841911 8ji3:A (1.78) BS01 FE2 ? N/A A0A861B387 37973794
    841912 8ji3:A (1.78) BS02 FE2 ? N/A A0A861B387 37973794
    841913 8ji3:A (1.78) BS03 67I ? N/A A0A861B387 37973794
    841914 8ji3:B (1.78) BS01 FE2 ? N/A A0A861B387 37973794
    841915 8ji3:B (1.78) BS02 FE2 ? N/A A0A861B387 37973794
    841916 8ji3:B (1.78) BS03 67I ? N/A A0A861B387 37973794
    841917 8ji4:A (1.67) BS01 FE2 ? N/A A0A861B387 37973794
    841918 8ji4:A (1.67) BS02 64X ? N/A A0A861B387 37973794
    841919 8ji4:B (1.67) BS01 FE2 ? N/A A0A861B387 37973794
    841920 8ji4:B (1.67) BS02 64X ? N/A A0A861B387 37973794
    841921 8ji5:A (2.01) BS01 FE2 ? N/A A0A861B387 37973794
    841922 8ji5:A (2.01) BS02 FE2 ? N/A A0A861B387 37973794
    841923 8ji5:A (2.01) BS03 64X ? N/A A0A861B387 37973794
    841924 8ji5:B (2.01) BS01 FE2 ? N/A A0A861B387 37973794
    841925 8ji5:B (2.01) BS02 FE2 ? N/A A0A861B387 37973794
    841926 8ji5:B (2.01) BS03 64X ? N/A A0A861B387 37973794
    841927 8ji6:A (1.9) BS01 FE2 ? N/A A0A861B387 37973794
    841928 8ji6:A (1.9) BS02 TRP ? N/A A0A861B387 37973794
    841929 8ji6:B (1.9) BS01 FE2 ? N/A A0A861B387 37973794
    841930 8ji6:B (1.9) BS02 TRP ? N/A A0A861B387 37973794
    841931 8ji7:A (1.61) BS01 FE2 ? N/A A0A861B387 37973794
    841932 8ji7:A (1.61) BS02 FE2 ? N/A A0A861B387 37973794
    841933 8ji7:A (1.61) BS03 TRP ? N/A A0A861B387 37973794
    841934 8ji7:B (1.61) BS01 FE2 ? N/A A0A861B387 37973794
    841935 8ji7:B (1.61) BS02 FE2 ? N/A A0A861B387 37973794
    841936 8ji7:B (1.61) BS03 TRP ? N/A A0A861B387 37973794
    841937 8ji8:A (2.65) BS01 CU ? GO:0004097 ... Q16G28 39808654
    841938 8ji8:A (2.65) BS02 CU ? GO:0004097 ... Q16G28 39808654
    841939 8ji8:B (2.65) BS01 CU ? GO:0004097 ... Q16G28 39808654
    841940 8ji8:B (2.65) BS02 CU ? GO:0004097 ... Q16G28 39808654
    841941 8ji8:C (2.65) BS01 CU ? GO:0004097 ... Q16G28 39808654
    841942 8ji8:C (2.65) BS02 CU ? GO:0004097 ... Q16G28 39808654
    841943 8ji8:D (2.65) BS01 CU ? GO:0004097 ... Q16G28 39808654
    841944 8ji8:D (2.65) BS02 CU ? GO:0004097 ... Q16G28 39808654
    841945 8jia:A (3.9) BS01 ATP ? GO:0000287 ... O05779 38044344
    841946 8jia:B (3.9) BS01 ATP ? GO:0000287 ... O05779 38044344
    841947 8jib:A (3.15) BS01 CU ? GO:0004097 ... Q16G28 39808654
    841948 8jib:A (3.15) BS02 CU ? GO:0004097 ... Q16G28 39808654
    841949 8jib:B (3.15) BS01 CU ? GO:0004097 ... Q16G28 39808654
    841950 8jib:B (3.15) BS02 CU ? GO:0004097 ... Q16G28 39808654
    841951 8jib:C (3.15) BS01 CU ? GO:0004097 ... Q16G28 39808654
    841952 8jib:C (3.15) BS02 CU ? GO:0004097 ... Q16G28 39808654
    841953 8jib:D (3.15) BS01 CU ? GO:0004097 ... Q16G28 39808654
    841954 8jib:D (3.15) BS02 CU ? GO:0004097 ... Q16G28 39808654
    841955 8jib:E (3.15) BS01 CU ? GO:0004097 ... Q16G28 39808654
    841956 8jib:E (3.15) BS02 CU ? GO:0004097 ... Q16G28 39808654
    841957 8jib:F (3.15) BS01 CU ? GO:0004097 ... Q16G28 39808654
    841958 8jib:F (3.15) BS02 CU ? GO:0004097 ... Q16G28 39808654
    841959 8jib:G (3.15) BS01 CU ? GO:0004097 ... Q16G28 39808654
    841960 8jib:G (3.15) BS02 CU ? GO:0004097 ... Q16G28 39808654
    841961 8jib:H (3.15) BS01 CU ? GO:0004097 ... Q16G28 39808654
    841962 8jib:H (3.15) BS02 CU ? GO:0004097 ... Q16G28 39808654
    841963 8jib:I (3.15) BS01 CU ? GO:0004097 ... Q16G28 39808654
    841964 8jib:I (3.15) BS02 CU ? GO:0004097 ... Q16G28 39808654
    841965 8jib:J (3.15) BS01 CU ? GO:0004097 ... Q16G28 39808654
    841966 8jib:J (3.15) BS02 CU ? GO:0004097 ... Q16G28 39808654
    841967 8jib:K (3.15) BS01 CU ? GO:0004097 ... Q16G28 39808654
    841968 8jib:K (3.15) BS02 CU ? GO:0004097 ... Q16G28 39808654
    841969 8jib:L (3.15) BS01 CU ? GO:0004097 ... Q16G28 39808654
    841970 8jib:L (3.15) BS02 CU ? GO:0004097 ... Q16G28 39808654
    841971 8jif:R (2.28) BS01 ZN 4.2.1.1 GO:0004089 ... Q64444 38315719
    841972 8jig:A (2.4) BS01 8JA 2.3.2.27 N/A Q96T88 41254147
    841973 8jig:B (2.4) BS01 8JA 2.3.2.27 N/A Q96T88 41254147
    841974 8jii:A (3.17) BS01 NIO ? GO:0001781 ... Q8TDS4 37597514
    841975 8jii:A (3.17) BS02 CLR ? GO:0001781 ... Q8TDS4 37597514
    841976 8jii:A (3.17) BS03 IX8 ? GO:0001781 ... Q8TDS4 37597514
    841977 8jij:A (2.5) BS01 PLP ? GO:0016830 ... A0A4S4ESS1 39287621
    841978 8jij:A (2.5) BS02 ZN ? GO:0016830 ... A0A4S4ESS1 39287621
    841979 8jij:A (2.5) BS03 ZN ? GO:0016830 ... A0A4S4ESS1 39287621
    841980 8jik:A (2.6) BS01 PLP ? GO:0016830 ... A0A4S4ESS1 39287621
    841981 8jik:A (2.6) BS02 ZN ? GO:0016830 ... A0A4S4ESS1 39287621
    841982 8jil:A (3.5) BS01 NIO ? GO:0001781 ... Q8TDS4 37597514
    841983 8jil:A (3.5) BS02 CLR ? GO:0001781 ... Q8TDS4 37597514
    841984 8jim:E (2.98) BS01 AW9 ? GO:0001781 ... Q8TDS4 37597514
    841985 8jip:R (2.85) BS01 peptide ? GO:0004888 ... P43220 37549266
    841986 8jip:R (2.85) BS02 D6M ? GO:0004888 ... P43220 37549266
    841987 8jiq:R (3.4) BS01 peptide ? GO:0004888 ... P47871 37549266
    841988 8jir:R (2.57) BS01 peptide ? GO:0004888 ... P43220 37549266
    841989 8jir:R (2.57) BS02 D6M ? GO:0004888 ... P43220 37549266
    841990 8jis:R (2.46) BS01 peptide ? GO:0004888 ... P43220 37549266
    841991 8jit:R (2.91) BS01 peptide ? GO:0004888 ... P47871 37549266
    841992 8jit:R (2.91) BS02 D6M ? GO:0004888 ... P47871 37549266
    841993 8jiu:R (2.76) BS01 peptide ? GO:0004888 ... P47871 37549266
    841994 8jiu:R (2.76) BS02 D6M ? GO:0004888 ... P47871 37549266
    841995 8jiv:CA (2.84) BS01 rna ? GO:0002181 ... W5ECL2 38458197
    841996 8jiv:CB (2.84) BS01 rna ? GO:0003723 ... Q7X744 38458197
    841997 8jiv:CC (2.84) BS01 rna N/A GO:0003735 ... N/A 38458197
    841998 8jiv:CC (2.84) BS02 rna N/A GO:0003735 ... N/A 38458197
    841999 8jiv:CD (2.84) BS01 rna ? GO:0000027 ... A0A3B6DD91 38458197
    842000 8jiv:CD (2.84) BS02 rna ? GO:0000027 ... A0A3B6DD91 38458197

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).