SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    842001 8jiv:CE (2.84) BS01 rna ? GO:0003735 ... A0A3B6QGW3 38458197
    842002 8jiv:CF (2.84) BS01 rna ? GO:0000463 ... A0A3B6DM38 38458197
    842003 8jiv:CF (2.84) BS02 rna ? GO:0000463 ... A0A3B6DM38 38458197
    842004 8jiv:CG (2.84) BS01 rna ? GO:0000470 ... A0A3B6RED0 38458197
    842005 8jiv:CG (2.84) BS02 rna ? GO:0000470 ... A0A3B6RED0 38458197
    842006 8jiv:CH (2.84) BS01 rna ? GO:0003735 ... A0A9R1FDI5 38458197
    842007 8jiv:CI (2.84) BS01 rna ? GO:0003735 ... A0A3B6HUM3 38458197
    842008 8jiv:CI (2.84) BS02 rna ? GO:0003735 ... A0A3B6HUM3 38458197
    842009 8jiv:CJ (2.84) BS01 rna ? GO:0003723 ... A0A3B5XX39 38458197
    842010 8jiv:CJ (2.84) BS02 rna ? GO:0003723 ... A0A3B5XX39 38458197
    842011 8jiv:CL (2.84) BS01 rna ? GO:0003723 ... A0A3B6QBU0 38458197
    842012 8jiv:CL (2.84) BS02 rna ? GO:0003723 ... A0A3B6QBU0 38458197
    842013 8jiv:CM (2.84) BS01 rna ? GO:0003723 ... A0A3B6DGT8 38458197
    842014 8jiv:CN (2.84) BS01 rna ? GO:0002181 ... W5FEX7 38458197
    842015 8jiv:CN (2.84) BS02 rna ? GO:0002181 ... W5FEX7 38458197
    842016 8jiv:CO (2.84) BS01 rna ? GO:0003729 ... Q5I7L1 38458197
    842017 8jiv:CP (2.84) BS01 rna ? GO:0002181 ... W5FSM8 38458197
    842018 8jiv:CP (2.84) BS02 rna ? GO:0002181 ... W5FSM8 38458197
    842019 8jiv:CQ (2.84) BS01 rna ? GO:0002181 ... A0A3B5ZQE8 38458197
    842020 8jiv:CR (2.84) BS01 rna ? GO:0003723 ... A0A3B6C2W3 38458197
    842021 8jiv:CS (2.84) BS01 rna ? GO:0002181 ... A0A3B5Z5M6 38458197
    842022 8jiv:CS (2.84) BS02 rna ? GO:0002181 ... A0A3B5Z5M6 38458197
    842023 8jiv:CT (2.84) BS01 rna ? GO:0003735 ... A0A9R1HBE9 38458197
    842024 8jiv:CT (2.84) BS02 rna ? GO:0003735 ... A0A9R1HBE9 38458197
    842025 8jiv:CU (2.84) BS01 rna ? GO:0002181 ... W5C5N9 38458197
    842026 8jiv:CV (2.84) BS01 rna ? GO:0003735 ... Q5I7K4 38458197
    842027 8jiv:CW (2.84) BS01 rna ? GO:0002181 ... A0A3B6ELC9 38458197
    842028 8jiv:CX (2.84) BS01 rna ? GO:0003735 ... A0A1D5UQZ5 38458197
    842029 8jiv:CX (2.84) BS02 rna ? GO:0003735 ... A0A1D5UQZ5 38458197
    842030 8jiv:CY (2.84) BS01 rna ? GO:0003723 ... W5D739 38458197
    842031 8jiv:CY (2.84) BS02 rna ? GO:0003723 ... W5D739 38458197
    842032 8jiv:CZ (2.84) BS01 rna ? GO:0003735 ... A0A341XZK6 38458197
    842033 8jiv:Ca (2.84) BS01 rna ? GO:0003735 ... A0A3B6AUW8 38458197
    842034 8jiv:Cb (2.84) BS01 rna ? GO:0002181 ... A0A1D5RRD3 38458197
    842035 8jiv:Cc (2.84) BS01 rna ? GO:0003723 ... Q5I7K9 38458197
    842036 8jiv:Cd (2.84) BS01 rna ? GO:0002181 ... W5G990 38458197
    842037 8jiv:Ce (2.84) BS01 rna ? GO:0003735 ... A0A3B6SDD9 38458197
    842038 8jiv:Cf (2.84) BS01 rna N/A GO:0003735 ... N/A 38458197
    842039 8jiv:Cg (2.84) BS01 rna ? GO:0003735 ... A0A3B6RFY8 38458197
    842040 8jiv:Ch (2.84) BS01 rna ? GO:0000463 ... Q8L805 38458197
    842041 8jiv:Ch (2.84) BS02 rna ? GO:0000463 ... Q8L805 38458197
    842042 8jiv:Ci (2.84) BS01 rna ? GO:0002181 ... A0A1D5S805 38458197
    842043 8jiv:Cj (2.84) BS01 rna ? GO:0000448 ... A0A1D6BC85 38458197
    842044 8jiv:Cj (2.84) BS02 rna ? GO:0000448 ... A0A1D6BC85 38458197
    842045 8jiv:Cj (2.84) BS03 ZN ? GO:0000448 ... A0A1D6BC85 38458197
    842046 8jiv:Ck (2.84) BS01 rna ? GO:0002181 ... A0A1D5W6Q2 38458197
    842047 8jiv:Cl (2.84) BS01 rna ? GO:0002181 ... Q5I7K7 38458197
    842048 8jiv:Cl (2.84) BS02 rna ? GO:0002181 ... Q5I7K7 38458197
    842049 8jiv:Cm (2.84) BS01 rna ? GO:0003729 ... A0A1D5XNC2 38458197
    842050 8jiv:Cm (2.84) BS02 ZN ? GO:0003729 ... A0A1D5XNC2 38458197
    842051 8jiv:Co (2.84) BS01 rna ? GO:0003735 ... A0A3B6C6X2 38458197
    842052 8jiv:Co (2.84) BS02 ZN ? GO:0003735 ... A0A3B6C6X2 38458197
    842053 8jiv:Cp (2.84) BS01 rna ? GO:0003735 ... D8L9P6 38458197
    842054 8jiv:Cr (2.84) BS01 rna ? GO:0003735 ... A0A3B5Y651 38458197
    842055 8jiw:BA (2.88) BS01 rna ? GO:0000028 ... A0A3B6AV88 38458197
    842056 8jiw:BB (2.88) BS01 rna ? GO:0003735 ... A0A3B6IU74 38458197
    842057 8jiw:BC (2.88) BS01 rna ? GO:0003723 ... A0A3B6N0N5 38458197
    842058 8jiw:BD (2.88) BS01 rna ? GO:0003723 ... W5I1R7 38458197
    842059 8jiw:BE (2.88) BS01 rna ? GO:0003723 ... A0A1D5SLI4 38458197
    842060 8jiw:BF (2.88) BS01 rna ? GO:0003723 ... A0A9R1JSD6 38458197
    842061 8jiw:BG (2.88) BS01 rna ? GO:0003735 ... W5C8N6 38458197
    842062 8jiw:BH (2.88) BS01 rna ? GO:0003735 ... Q5I7K2 38458197
    842063 8jiw:BI (2.88) BS01 rna ? GO:0002181 ... A0A3B6C6G0 38458197
    842064 8jiw:BJ (2.88) BS01 rna ? GO:0003723 ... W5FPA7 38458197
    842065 8jiw:BK (2.88) BS01 rna ? GO:0003723 ... W5AUH7 38458197
    842066 8jiw:BL (2.88) BS01 rna ? GO:0003729 ... A0A3B6QHW3 38458197
    842067 8jiw:BN (2.88) BS01 rna ? GO:0000462 ... W5I035 38458197
    842068 8jiw:BO (2.88) BS01 rna ? GO:0000028 ... A0A3B6SS17 38458197
    842069 8jiw:BP (2.88) BS01 rna ? GO:0003723 ... A0A3B6LV48 38458197
    842070 8jiw:BQ (2.88) BS01 rna ? GO:0000462 ... A0A3B6HX49 38458197
    842071 8jiw:BR (2.88) BS01 rna ? GO:0003729 ... A0A3B5XY60 38458197
    842072 8jiw:BS (2.88) BS01 rna ? GO:0003676 ... A0A3B6TWW5 38458197
    842073 8jiw:BS (2.88) BS02 MG ? GO:0003676 ... A0A3B6TWW5 38458197
    842074 8jiw:BS (2.88) BS03 MG ? GO:0003676 ... A0A3B6TWW5 38458197
    842075 8jiw:BT (2.88) BS01 rna ? GO:0003735 ... W5FWF5 38458197
    842076 8jiw:BU (2.88) BS01 rna ? GO:0003735 ... A0A3B6MKF1 38458197
    842077 8jiw:BW (2.88) BS01 rna ? GO:0003735 ... E2F3W4 38458197
    842078 8jiw:BX (2.88) BS01 rna ? GO:0003735 ... W5FV77 38458197
    842079 8jiw:BY (2.88) BS01 rna ? GO:0002181 ... A0A3B6PK86 38458197
    842080 8jiw:BZ (2.88) BS01 rna ? N/A A0A3B6HY18 38458197
    842081 8jiw:Ba (2.88) BS01 rna ? GO:0003729 ... A0A3B6KQB8 38458197
    842082 8jiw:Bb (2.88) BS01 rna ? GO:0003735 ... A0A341UET3 38458197
    842083 8jiw:Bc (2.88) BS01 rna ? GO:0000028 ... W5E8X2 38458197
    842084 8jiw:Bd (2.88) BS01 rna ? GO:0002181 ... A0A1D5ZKM9 38458197
    842085 8jiw:Bd (2.88) BS02 ZN ? GO:0002181 ... A0A1D5ZKM9 38458197
    842086 8jiw:Be (2.88) BS01 rna ? GO:0003735 ... A0A3B6S9M7 38458197
    842087 8jiw:Bg (2.88) BS01 rna ? GO:0005080 ... A0A3B5Z4Q0 38458197
    842088 8jj8:F (3.2) BS01 H98 ? GO:0004930 ... P07550
    P0ABE7
    37580554
    842089 8jj9:A (2.51) BS01 peptide ? N/A Q658Y4 37903274
    842090 8jj9:B (2.51) BS01 peptide ? N/A Q658Y4 37903274
    842091 8jja:A (1.6) BS01 FE 3.6.1.41 GO:0005515 ... A0A0H2URF8 38701795
    842092 8jja:A (1.6) BS02 FE 3.6.1.41 GO:0005515 ... A0A0H2URF8 38701795
    842093 8jjb:A (2.68) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38430854
    842094 8jjb:A (2.68) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 38430854
    842095 8jjb:B (2.68) BS01 USI ? GO:0000226 ... P02554 38430854
    842096 8jjb:B (2.68) BS02 GDP ? GO:0000226 ... P02554 38430854
    842097 8jjb:C (2.68) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38430854
    842098 8jjb:C (2.68) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 38430854
    842099 8jjb:D (2.68) BS01 CA ? GO:0000226 ... P02554 38430854
    842100 8jjb:D (2.68) BS02 GTP ? GO:0000226 ... P02554 38430854
    842101 8jjb:D (2.68) BS03 USI ? GO:0000226 ... P02554 38430854
    842102 8jjb:F (2.68) BS01 ACP 6.3.2.25 GO:0000226 ... A0A8V0Z8P0 38430854
    842103 8jjc:A (2.76) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38430854
    842104 8jjc:A (2.76) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 38430854
    842105 8jjc:B (2.76) BS01 UPO ? GO:0000226 ... P02554 38430854
    842106 8jjc:B (2.76) BS02 GDP ? GO:0000226 ... P02554 38430854
    842107 8jjc:C (2.76) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38430854
    842108 8jjc:C (2.76) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 38430854
    842109 8jjc:D (2.76) BS01 GTP ? GO:0000226 ... P02554 38430854
    842110 8jjc:F (2.76) BS01 ACP 6.3.2.25 GO:0000226 ... A0A8V0Z8P0 38430854
    842111 8jje:A (3.4) BS01 ZN 3.4.17.-
    3.4.17.23
    GO:0006508 ... Q9BYF1 37647387
    842112 8jjk:A (1.7) BS01 ADP 3.6.1.41 GO:0005515 ... A0A0H2URF8 38701795
    842113 8jjk:A (1.7) BS02 FE 3.6.1.41 GO:0005515 ... A0A0H2URF8 38701795
    842114 8jjk:A (1.7) BS03 FE 3.6.1.41 GO:0005515 ... A0A0H2URF8 38701795
    842115 8jjk:A (1.7) BS04 MG 3.6.1.41 GO:0005515 ... A0A0H2URF8 38701795
    842116 8jjl:A (3.2) BS01 DZQ ? GO:0004930 ... P07550
    P0ABE7
    37580554
    842117 8jjm:A (1.8) BS01 CA ? GO:0004553 ... A0A0S2UQL4 37290279
    842118 8jjm:A (1.8) BS02 CA ? GO:0004553 ... A0A0S2UQL4 37290279
    842119 8jjm:A (1.8) BS03 CA ? GO:0004553 ... A0A0S2UQL4 37290279
    842120 8jjm:B (1.8) BS01 CA ? GO:0004553 ... A0A0S2UQL4 37290279
    842121 8jjm:B (1.8) BS02 CA ? GO:0004553 ... A0A0S2UQL4 37290279
    842122 8jjm:B (1.8) BS03 CA ? GO:0004553 ... A0A0S2UQL4 37290279
    842123 8jjn:A (1.98) BS01 UPG N/A GO:0016757 ... N/A 38395953
    842124 8jjn:B (1.98) BS01 UPG N/A GO:0016757 ... N/A 38395953
    842125 8jjn:C (1.98) BS01 UPG N/A GO:0016757 ... N/A 38395953
    842126 8jjo:F (3.4) BS01 JTZ ? GO:0004930 ... P07550
    P0ABE7
    37580554
    842127 8jjp:A (2.9) BS01 peptide N/A GO:0004930 ... P46091 39466725
    842128 8jjp:A (2.9) BS02 CLR N/A GO:0004930 ... P46091 39466725
    842129 8jjq:A (1.64) BS01 UD2 N/A GO:0016757 ... N/A 38395953
    842130 8jjq:B (1.64) BS01 UD2 N/A GO:0016757 ... N/A 38395953
    842131 8jjq:C (1.64) BS01 UD2 N/A GO:0016757 ... N/A 38395953
    842132 8jjr:A (2.8) BS01 CLA N/A GO:0009765 ... A0AA36I308 38493166
    842133 8jjr:A (2.8) BS02 CLA N/A GO:0009765 ... A0AA36I308 38493166
    842134 8jjr:A (2.8) BS03 CLA N/A GO:0009765 ... A0AA36I308 38493166
    842135 8jjr:A (2.8) BS04 CLA N/A GO:0009765 ... A0AA36I308 38493166
    842136 8jjr:A (2.8) BS05 CLA N/A GO:0009765 ... A0AA36I308 38493166
    842137 8jjr:A (2.8) BS06 CLA N/A GO:0009765 ... A0AA36I308 38493166
    842138 8jjr:A (2.8) BS07 CLA N/A GO:0009765 ... A0AA36I308 38493166
    842139 8jjr:A (2.8) BS08 KC2 N/A GO:0009765 ... A0AA36I308 38493166
    842140 8jjr:A (2.8) BS09 CLA N/A GO:0009765 ... A0AA36I308 38493166
    842141 8jjr:A (2.8) BS10 CLA N/A GO:0009765 ... A0AA36I308 38493166
    842142 8jjr:A (2.8) BS11 CLA N/A GO:0009765 ... A0AA36I308 38493166
    842143 8jjr:A (2.8) BS12 CLA N/A GO:0009765 ... A0AA36I308 38493166
    842144 8jjr:A (2.8) BS13 UIX N/A GO:0009765 ... A0AA36I308 38493166
    842145 8jjr:A (2.8) BS14 DD6 N/A GO:0009765 ... A0AA36I308 38493166
    842146 8jjr:A (2.8) BS15 DD6 N/A GO:0009765 ... A0AA36I308 38493166
    842147 8jjr:A (2.8) BS16 UIX N/A GO:0009765 ... A0AA36I308 38493166
    842148 8jjr:A (2.8) BS17 DD6 N/A GO:0009765 ... A0AA36I308 38493166
    842149 8jjr:A (2.8) BS18 CLA N/A GO:0009765 ... A0AA36I308 38493166
    842150 8jjr:B (2.8) BS01 CLA N/A GO:0009765 ... A0AA36MZ23 38493166
    842151 8jjr:B (2.8) BS02 KC2 N/A GO:0009765 ... A0AA36MZ23 38493166
    842152 8jjr:B (2.8) BS03 CLA N/A GO:0009765 ... A0AA36MZ23 38493166
    842153 8jjr:B (2.8) BS04 CLA N/A GO:0009765 ... A0AA36MZ23 38493166
    842154 8jjr:B (2.8) BS05 CLA N/A GO:0009765 ... A0AA36MZ23 38493166
    842155 8jjr:B (2.8) BS06 CLA N/A GO:0009765 ... A0AA36MZ23 38493166
    842156 8jjr:B (2.8) BS07 CLA N/A GO:0009765 ... A0AA36MZ23 38493166
    842157 8jjr:B (2.8) BS08 KC2 N/A GO:0009765 ... A0AA36MZ23 38493166
    842158 8jjr:B (2.8) BS09 CLA N/A GO:0009765 ... A0AA36MZ23 38493166
    842159 8jjr:B (2.8) BS10 CLA N/A GO:0009765 ... A0AA36MZ23 38493166
    842160 8jjr:B (2.8) BS11 UIX N/A GO:0009765 ... A0AA36MZ23 38493166
    842161 8jjr:B (2.8) BS12 DD6 N/A GO:0009765 ... A0AA36MZ23 38493166
    842162 8jjr:B (2.8) BS13 DD6 N/A GO:0009765 ... A0AA36MZ23 38493166
    842163 8jjr:B (2.8) BS14 DD6 N/A GO:0009765 ... A0AA36MZ23 38493166
    842164 8jjr:B (2.8) BS15 CLA N/A GO:0009765 ... A0AA36MZ23 38493166
    842165 8jjr:B (2.8) BS16 DD6 N/A GO:0009765 ... A0AA36MZ23 38493166
    842166 8jjr:B (2.8) BS17 CLA N/A GO:0009765 ... A0AA36MZ23 38493166
    842167 8jjr:C (2.8) BS01 CLA N/A GO:0009765 ... A0AA36MZ23 38493166
    842168 8jjr:C (2.8) BS02 CLA N/A GO:0009765 ... A0AA36MZ23 38493166
    842169 8jjr:C (2.8) BS03 CLA N/A GO:0009765 ... A0AA36MZ23 38493166
    842170 8jjr:C (2.8) BS04 CLA N/A GO:0009765 ... A0AA36MZ23 38493166
    842171 8jjr:C (2.8) BS05 CLA N/A GO:0009765 ... A0AA36MZ23 38493166
    842172 8jjr:C (2.8) BS06 CLA N/A GO:0009765 ... A0AA36MZ23 38493166
    842173 8jjr:C (2.8) BS07 CLA N/A GO:0009765 ... A0AA36MZ23 38493166
    842174 8jjr:C (2.8) BS08 CLA N/A GO:0009765 ... A0AA36MZ23 38493166
    842175 8jjr:C (2.8) BS09 CLA N/A GO:0009765 ... A0AA36MZ23 38493166
    842176 8jjr:C (2.8) BS10 KC2 N/A GO:0009765 ... A0AA36MZ23 38493166
    842177 8jjr:C (2.8) BS11 CLA N/A GO:0009765 ... A0AA36MZ23 38493166
    842178 8jjr:C (2.8) BS12 CLA N/A GO:0009765 ... A0AA36MZ23 38493166
    842179 8jjr:C (2.8) BS13 UIX N/A GO:0009765 ... A0AA36MZ23 38493166
    842180 8jjr:C (2.8) BS14 DD6 N/A GO:0009765 ... A0AA36MZ23 38493166
    842181 8jjr:C (2.8) BS15 UIX N/A GO:0009765 ... A0AA36MZ23 38493166
    842182 8jjr:C (2.8) BS16 DD6 N/A GO:0009765 ... A0AA36MZ23 38493166
    842183 8jjr:C (2.8) BS17 DD6 N/A GO:0009765 ... A0AA36MZ23 38493166
    842184 8jjr:C (2.8) BS18 CLA N/A GO:0009765 ... A0AA36MZ23 38493166
    842185 8jjr:C (2.8) BS19 CLA N/A GO:0009765 ... A0AA36MZ23 38493166
    842186 8jjr:D (2.8) BS01 CLA N/A GO:0009765 ... A0AA36JNS8 38493166
    842187 8jjr:D (2.8) BS02 CLA N/A GO:0009765 ... A0AA36JNS8 38493166
    842188 8jjr:D (2.8) BS03 CLA N/A GO:0009765 ... A0AA36JNS8 38493166
    842189 8jjr:D (2.8) BS04 CLA N/A GO:0009765 ... A0AA36JNS8 38493166
    842190 8jjr:D (2.8) BS05 CLA N/A GO:0009765 ... A0AA36JNS8 38493166
    842191 8jjr:D (2.8) BS06 CLA N/A GO:0009765 ... A0AA36JNS8 38493166
    842192 8jjr:D (2.8) BS07 CLA N/A GO:0009765 ... A0AA36JNS8 38493166
    842193 8jjr:D (2.8) BS08 CLA N/A GO:0009765 ... A0AA36JNS8 38493166
    842194 8jjr:D (2.8) BS09 CLA N/A GO:0009765 ... A0AA36JNS8 38493166
    842195 8jjr:D (2.8) BS10 CLA N/A GO:0009765 ... A0AA36JNS8 38493166
    842196 8jjr:D (2.8) BS11 CLA N/A GO:0009765 ... A0AA36JNS8 38493166
    842197 8jjr:D (2.8) BS12 CLA N/A GO:0009765 ... A0AA36JNS8 38493166
    842198 8jjr:D (2.8) BS13 CLA N/A GO:0009765 ... A0AA36JNS8 38493166
    842199 8jjr:D (2.8) BS14 DD6 N/A GO:0009765 ... A0AA36JNS8 38493166
    842200 8jjr:D (2.8) BS15 DD6 N/A GO:0009765 ... A0AA36JNS8 38493166

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).