SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    842001 8k2d:LJ (3.2) BS02 rna N/A GO:0000027 ... P0C0W9 38942792
    842002 8k2d:LK (3.2) BS01 rna N/A GO:0000027 ... P0CX53 38942792
    842003 8k2d:LL (3.2) BS01 rna N/A GO:0002181 ... Q12690 38942792
    842004 8k2d:LL (3.2) BS02 rna N/A GO:0002181 ... Q12690 38942792
    842005 8k2d:LM (3.2) BS01 rna N/A GO:0000027 ... P36105 38942792
    842006 8k2d:LN (3.2) BS01 rna N/A GO:0002181 ... P05748 38942792
    842007 8k2d:LN (3.2) BS02 rna N/A GO:0002181 ... P05748 38942792
    842008 8k2d:LO (3.2) BS01 rna N/A GO:0000470 ... P26784 38942792
    842009 8k2d:LP (3.2) BS01 rna N/A GO:0000448 ... P05740 38942792
    842010 8k2d:LP (3.2) BS02 rna N/A GO:0000448 ... P05740 38942792
    842011 8k2d:LQ (3.2) BS01 rna N/A GO:0002181 ... P0CX49 38942792
    842012 8k2d:LR (3.2) BS01 rna N/A GO:0002181 ... P0CX82 38942792
    842013 8k2d:LS (3.2) BS01 rna N/A GO:0002181 ... P0CX23 38942792
    842014 8k2d:LS (3.2) BS02 rna N/A GO:0002181 ... P0CX23 38942792
    842015 8k2d:LT (3.2) BS01 rna N/A GO:0002181 ... Q02753 38942792
    842016 8k2d:LT (3.2) BS02 rna N/A GO:0002181 ... Q02753 38942792
    842017 8k2d:LU (3.2) BS01 rna N/A GO:0002181 ... P05749 38942792
    842018 8k2d:LV (3.2) BS01 rna N/A GO:0002181 ... P0CX41 38942792
    842019 8k2d:LV (3.2) BS02 rna N/A GO:0002181 ... P0CX41 38942792
    842020 8k2d:LW (3.2) BS01 rna N/A GO:0002181 ... P04449 38942792
    842021 8k2d:LX (3.2) BS01 rna N/A GO:0000027 ... P04456 38942792
    842022 8k2d:LX (3.2) BS02 rna N/A GO:0000027 ... P04456 38942792
    842023 8k2d:LY (3.2) BS01 rna N/A GO:0002181 ... P05743 38942792
    842024 8k2d:LY (3.2) BS02 rna N/A GO:0002181 ... P05743 38942792
    842025 8k2d:LZ (3.2) BS01 rna N/A GO:0002181 ... P0C2H6 38942792
    842026 8k2d:La (3.2) BS01 rna N/A GO:0002181 ... P02406 38942792
    842027 8k2d:Lb (3.2) BS01 rna N/A GO:0002181 ... P05747 38942792
    842028 8k2d:Lc (3.2) BS01 rna N/A GO:0002181 ... P14120 38942792
    842029 8k2d:Ld (3.2) BS01 rna N/A GO:0002181 ... P0C2H8 38942792
    842030 8k2d:Le (3.2) BS01 rna N/A GO:0002181 ... P38061 38942792
    842031 8k2d:Lf (3.2) BS01 rna N/A GO:0000027 ... P05744 38942792
    842032 8k2d:Lg (3.2) BS01 rna N/A GO:0002181 ... P87262 38942792
    842033 8k2d:Lg (3.2) BS02 ZN N/A GO:0002181 ... P87262 38942792
    842034 8k2d:Lh (3.2) BS01 rna N/A GO:0000463 ... P0CX84 38942792
    842035 8k2d:Lh (3.2) BS02 rna N/A GO:0000463 ... P0CX84 38942792
    842036 8k2d:Li (3.2) BS01 rna N/A GO:0002181 ... P05745 38942792
    842037 8k2d:Lj (3.2) BS01 rna N/A GO:0000448 ... P49166 38942792
    842038 8k2d:Lj (3.2) BS02 rna N/A GO:0000448 ... P49166 38942792
    842039 8k2d:Lj (3.2) BS03 T1C N/A GO:0000448 ... P49166 38942792
    842040 8k2d:Lj (3.2) BS04 ZN N/A GO:0000448 ... P49166 38942792
    842041 8k2d:Lk (3.2) BS01 rna N/A GO:0002181 ... P49167 38942792
    842042 8k2d:Ll (3.2) BS01 rna N/A GO:0002181 ... P04650 38942792
    842043 8k2d:Ll (3.2) BS02 rna N/A GO:0002181 ... P04650 38942792
    842044 8k2d:Lm (3.2) BS01 rna N/A GO:0000027 ... P0CH08 38942792
    842045 8k2d:Lm (3.2) BS02 ZN N/A GO:0000027 ... P0CH08 38942792
    842046 8k2d:Lo (3.2) BS01 rna N/A GO:0002181 ... P0CX27 38942792
    842047 8k2d:Lo (3.2) BS02 ZN N/A GO:0002181 ... P0CX27 38942792
    842048 8k2d:Lp (3.2) BS01 rna N/A GO:0002181 ... P0CX25 38942792
    842049 8k2d:Lp (3.2) BS02 ZN N/A GO:0002181 ... P0CX25 38942792
    842050 8k2d:P0 (3.2) BS01 rna N/A GO:0000027 ... P05317 38942792
    842051 8k2d:SA (3.2) BS01 rna N/A GO:0000028 ... P32905 38942792
    842052 8k2d:SB (3.2) BS01 rna N/A GO:0000462 ... P33442 38942792
    842053 8k2d:SC (3.2) BS01 rna N/A GO:0000054 ... P25443 38942792
    842054 8k2d:SD (3.2) BS01 rna N/A GO:0000054 ... P05750 38942792
    842055 8k2d:SE (3.2) BS01 rna N/A GO:0002181 ... P0CX35 38942792
    842056 8k2d:SF (3.2) BS01 rna N/A GO:0000028 ... P26783 38942792
    842057 8k2d:SG (3.2) BS01 rna N/A GO:0000462 ... P0CX37 38942792
    842058 8k2d:SH (3.2) BS01 rna N/A GO:0002181 ... P26786 38942792
    842059 8k2d:SI (3.2) BS01 rna N/A GO:0000462 ... P0CX39 38942792
    842060 8k2d:SI (3.2) BS02 rna N/A GO:0000462 ... P0CX39 38942792
    842061 8k2d:SJ (3.2) BS01 rna N/A GO:0000462 ... O13516 38942792
    842062 8k2d:SK (3.2) BS01 rna N/A GO:0000054 ... Q08745 38942792
    842063 8k2d:SL (3.2) BS01 rna N/A GO:0000028 ... P0CX47 38942792
    842064 8k2d:SM (3.2) BS01 rna N/A GO:0000028 ... P48589 38942792
    842065 8k2d:SN (3.2) BS01 rna N/A GO:0000462 ... P05756 38942792
    842066 8k2d:SN (3.2) BS02 rna N/A GO:0000462 ... P05756 38942792
    842067 8k2d:SO (3.2) BS01 rna N/A GO:0000028 ... P06367 38942792
    842068 8k2d:SP (3.2) BS01 rna N/A GO:0000028 ... Q01855 38942792
    842069 8k2d:SQ (3.2) BS01 rna N/A GO:0000462 ... P0CX51 38942792
    842070 8k2d:SR (3.2) BS01 rna N/A GO:0000028 ... P02407 38942792
    842071 8k2d:SS (3.2) BS01 rna N/A GO:0000054 ... P0CX55 38942792
    842072 8k2d:ST (3.2) BS01 rna N/A GO:0000028 ... P07280 38942792
    842073 8k2d:SU (3.2) BS01 rna N/A GO:0000462 ... P38701 38942792
    842074 8k2d:SV (3.2) BS01 rna N/A GO:0000447 ... P0C0V8 38942792
    842075 8k2d:SW (3.2) BS01 rna N/A GO:0002181 ... P0C0W1 38942792
    842076 8k2d:SX (3.2) BS01 rna N/A GO:0000462 ... P0CX29 38942792
    842077 8k2d:SY (3.2) BS01 rna N/A GO:0000462 ... P0CX31 38942792
    842078 8k2d:SZ (3.2) BS01 rna N/A GO:0002181 ... Q3E792 38942792
    842079 8k2d:Sa (3.2) BS01 rna N/A GO:0000054 ... P39939 38942792
    842080 8k2d:Sa (3.2) BS02 ZN N/A GO:0000054 ... P39939 38942792
    842081 8k2d:Sb (3.2) BS01 rna N/A GO:0000028 ... P35997 38942792
    842082 8k2d:Sc (3.2) BS01 rna N/A GO:0000028 ... Q3E7X9 38942792
    842083 8k2d:Sd (3.2) BS01 rna N/A GO:0002181 ... P41057 38942792
    842084 8k2d:Se (3.2) BS01 rna N/A GO:0002181 ... P0CX33 38942792
    842085 8k2d:Sf (3.2) BS01 rna N/A GO:0000028 ... P05759 38942792
    842086 8k2d:Sg (3.2) BS01 rna N/A GO:0001965 ... P38011 38942792
    842087 8k2e:A (1.6) BS01 VIM N/A GO:0003723 ... Q96MU7 N/A
    842088 8k2e:B (1.6) BS01 VIM N/A GO:0003723 ... Q96MU7 N/A
    842089 8k2h:A (2.2) BS01 GNL ? GO:0003674 ... Q7Y231 38730244
    842090 8k2h:B (2.2) BS01 GNL ? GO:0003674 ... Q7Y231 38730244
    842091 8k2i:A (2.5) BS01 NGT ? GO:0003674 ... Q7Y231 38730244
    842092 8k2i:B (2.5) BS01 NGT ? GO:0003674 ... Q7Y231 38730244
    842093 8k2k:A (1.75) BS01 GNL N/A N/A N/A 38730244
    842094 8k2m:A (1.65) BS01 GNL N/A N/A N/A 38730244
    842095 8k2v:A (3.52) BS01 BTI N/A GO:0004075 ... Q96RQ3 39223421
    842096 8k2v:B (3.52) BS01 BTI N/A GO:0004075 ... Q96RQ3 39223421
    842097 8k2v:C (3.52) BS01 BTI N/A GO:0004075 ... Q96RQ3 39223421
    842098 8k2v:D (3.52) BS01 BTI N/A GO:0004075 ... Q96RQ3 39223421
    842099 8k2v:E (3.52) BS01 BTI N/A GO:0004075 ... Q96RQ3 39223421
    842100 8k2v:F (3.52) BS01 BTI N/A GO:0004075 ... Q96RQ3 39223421
    842101 8k2v:G (3.52) BS01 BTI N/A GO:0004485 ... Q9HCC0 39223421
    842102 8k2v:G (3.52) BS02 ACO N/A GO:0004485 ... Q9HCC0 39223421
    842103 8k2v:H (3.52) BS01 BTI N/A GO:0004485 ... Q9HCC0 39223421
    842104 8k2v:H (3.52) BS02 ACO N/A GO:0004485 ... Q9HCC0 39223421
    842105 8k2v:I (3.52) BS01 BTI N/A GO:0004485 ... Q9HCC0 39223421
    842106 8k2v:I (3.52) BS02 BTI N/A GO:0004485 ... Q9HCC0 39223421
    842107 8k2v:I (3.52) BS03 ACO N/A GO:0004485 ... Q9HCC0 39223421
    842108 8k2v:J (3.52) BS01 BTI N/A GO:0004485 ... Q9HCC0 39223421
    842109 8k2v:J (3.52) BS02 ACO N/A GO:0004485 ... Q9HCC0 39223421
    842110 8k2v:K (3.52) BS01 ACO N/A GO:0004485 ... Q9HCC0 39223421
    842111 8k2v:L (3.52) BS01 ACO N/A GO:0004485 ... Q9HCC0 39223421
    842112 8k2w:R (3.0) BS01 CLR ? GO:0002685 ... P0ABE7
    P41145
    P49682
    38012179
    842113 8k2w:R (3.0) BS02 LPC ? GO:0002685 ... P0ABE7
    P41145
    P49682
    38012179
    842114 8k2w:R (3.0) BS03 FI6 ? GO:0002685 ... P0ABE7
    P41145
    P49682
    38012179
    842115 8k2x:R (3.2) BS01 peptide 1.13.12.13 GO:0001525 ... P0ABE7
    P49682
    Q9GV45
    38012179
    842116 8k2x:R (3.2) BS02 CLR 1.13.12.13 GO:0001525 ... P0ABE7
    P49682
    Q9GV45
    38012179
    842117 8k31:B (-1.00) BS01 ZN N/A GO:0003700 ... Q8S8P5 38734744
    842118 8k32:A (2.12) BS01 NAI N/A GO:0000166 ... D7CJ24 N/A
    842119 8k32:A (2.12) BS02 MG N/A GO:0000166 ... D7CJ24 N/A
    842120 8k32:A (2.12) BS03 MG N/A GO:0000166 ... D7CJ24 N/A
    842121 8k32:B (2.12) BS01 NAI N/A GO:0000166 ... D7CJ24 N/A
    842122 8k32:B (2.12) BS02 MG N/A GO:0000166 ... D7CJ24 N/A
    842123 8k32:B (2.12) BS03 MG N/A GO:0000166 ... D7CJ24 N/A
    842124 8k32:C (2.12) BS01 NAI N/A GO:0000166 ... D7CJ24 N/A
    842125 8k32:C (2.12) BS02 MG N/A GO:0000166 ... D7CJ24 N/A
    842126 8k32:C (2.12) BS03 MG N/A GO:0000166 ... D7CJ24 N/A
    842127 8k32:D (2.12) BS01 NAI N/A GO:0000166 ... D7CJ24 N/A
    842128 8k32:D (2.12) BS02 MG N/A GO:0000166 ... D7CJ24 N/A
    842129 8k32:D (2.12) BS03 MG N/A GO:0000166 ... D7CJ24 N/A
    842130 8k33:A (2.13) BS01 ZN N/A GO:0000302 ... P00441 N/A
    842131 8k33:C (2.13) BS01 ZN N/A GO:0000302 ... P00441 N/A
    842132 8k33:E (2.13) BS01 ZN N/A GO:0000302 ... P00441 N/A
    842133 8k33:G (2.13) BS01 ZN N/A GO:0000302 ... P00441 N/A
    842134 8k33:I (2.13) BS01 ZN N/A GO:0000302 ... P00441 N/A
    842135 8k33:K (2.13) BS01 ZN N/A GO:0000302 ... P00441 N/A
    842136 8k33:L (2.13) BS01 ZN N/A GO:0000302 ... P00441 N/A
    842137 8k33:N (2.13) BS01 ZN N/A GO:0000302 ... P00441 N/A
    842138 8k33:P (2.13) BS01 ZN N/A GO:0000302 ... P00441 N/A
    842139 8k33:U (2.13) BS01 ZN N/A GO:0000302 ... P00441 N/A
    842140 8k33:W (2.13) BS01 ZN N/A GO:0000302 ... P00441 N/A
    842141 8k33:Y (2.13) BS01 ZN N/A GO:0000302 ... P00441 N/A
    842142 8k34:B (2.81) BS01 rna ? GO:0003676 ... A0A1I7NFD7 37932528
    842143 8k34:B (2.81) BS02 MG ? GO:0003676 ... A0A1I7NFD7 37932528
    842144 8k35:G (3.44) BS01 SF4 ? GO:0030430 ... P03738 38096144
    842145 8k35:J (3.44) BS01 SF4 ? GO:0030430 ... P03738 38096144
    842146 8k35:N (3.44) BS01 SF4 ? GO:0030430 ... P03738 38096144
    842147 8k3a:A (2.74) BS01 ZN N/A GO:0000302 ... P00441 N/A
    842148 8k3b:A (1.9) BS01 ELE ? GO:0003677 ... A0A071KWR3 N/A
    842149 8k3d:A (2.3) BS01 dna ? GO:0003700 ... Q16656 38055835
    842150 8k3f:A (2.603) BS01 ZN ? GO:0003677 ... Q9PN35 37629127
    842151 8k3f:B (2.603) BS01 ZN ? GO:0003677 ... Q9PN35 37629127
    842152 8k3f:C (2.603) BS01 ZN ? GO:0003677 ... Q9PN35 37629127
    842153 8k3f:D (2.603) BS01 ZN ? GO:0003677 ... Q9PN35 37629127
    842154 8k3h:A (2.86) BS01 NAD N/A GO:0006520 ... N/A N/A
    842155 8k3h:A (2.86) BS02 NAD N/A GO:0006520 ... N/A N/A
    842156 8k3h:B (2.86) BS01 NAD N/A GO:0006520 ... N/A N/A
    842157 8k3h:B (2.86) BS02 NAD N/A GO:0006520 ... N/A N/A
    842158 8k3l:A (2.3) BS01 CU N/A GO:0000302 ... P00441 N/A
    842159 8k3l:A (2.3) BS02 ZN N/A GO:0000302 ... P00441 N/A
    842160 8k3l:C (2.3) BS01 CU N/A GO:0000302 ... P00441 N/A
    842161 8k3l:C (2.3) BS02 ZN N/A GO:0000302 ... P00441 N/A
    842162 8k3l:E (2.3) BS01 CU N/A GO:0000302 ... P00441 N/A
    842163 8k3l:E (2.3) BS02 ZN N/A GO:0000302 ... P00441 N/A
    842164 8k3l:G (2.3) BS01 CU N/A GO:0000302 ... P00441 N/A
    842165 8k3l:G (2.3) BS02 ZN N/A GO:0000302 ... P00441 N/A
    842166 8k3o:B (3.88) BS01 rna N/A GO:0000028 ... P0A7V0 39588766
    842167 8k3o:C (3.88) BS01 rna N/A GO:0000028 ... P0A7V3 39588766
    842168 8k3o:D (3.88) BS01 rna N/A GO:0000028 ... P0A7V8 39588766
    842169 8k3o:E (3.88) BS01 rna N/A GO:0000028 ... P0A7W1 39588766
    842170 8k3o:E (3.88) BS02 rna N/A GO:0000028 ... P0A7W1 39588766
    842171 8k3o:F (3.88) BS01 rna N/A GO:0002181 ... P02358 39588766
    842172 8k3o:G (3.88) BS01 rna N/A GO:0000028 ... P02359 39588766
    842173 8k3o:H (3.88) BS01 rna N/A GO:0000028 ... P0A7W7 39588766
    842174 8k3o:I (3.88) BS01 rna N/A GO:0000049 ... P0A7X3 39588766
    842175 8k3o:J (3.88) BS01 rna N/A GO:0000049 ... P0A7R5 39588766
    842176 8k3o:K (3.88) BS01 rna N/A GO:0002181 ... P0A7R9 39588766
    842177 8k3o:L (3.88) BS01 rna N/A GO:0000049 ... P0A7S3 39588766
    842178 8k3o:M (3.88) BS01 rna N/A GO:0000049 ... P0A7S9 39588766
    842179 8k3o:N (3.88) BS01 rna N/A GO:0000028 ... P0AG59 39588766
    842180 8k3o:O (3.88) BS01 rna N/A GO:0000028 ... P0ADZ4 39588766
    842181 8k3o:P (3.88) BS01 rna N/A GO:0000028 ... P0A7T3 39588766
    842182 8k3o:Q (3.88) BS01 rna N/A GO:0000028 ... P0AG63 39588766
    842183 8k3o:R (3.88) BS01 rna N/A GO:0002181 ... P0A7T7 39588766
    842184 8k3o:S (3.88) BS01 rna N/A GO:0000028 ... P0A7U3 39588766
    842185 8k3o:T (3.88) BS01 rna N/A GO:0000028 ... P0A7U7 39588766
    842186 8k3p:A (3.64) BS01 VDG 2.4.1.16 GO:0000920 ... P08004 37553334
    842187 8k3p:B (3.64) BS01 VDG 2.4.1.16 GO:0000920 ... P08004 37553334
    842188 8k3t:A (3.57) BS01 UDP 2.4.1.16 GO:0000920 ... P08004 37553334
    842189 8k3t:B (3.57) BS01 UDP 2.4.1.16 GO:0000920 ... P08004 37553334
    842190 8k3u:A (3.06) BS01 UDP 2.4.1.16 GO:0000920 ... P08004 37553334
    842191 8k3u:B (3.06) BS01 UDP 2.4.1.16 GO:0000920 ... P08004 37553334
    842192 8k3v:A (3.1) BS01 UD1 2.4.1.16 GO:0000920 ... P08004 37553334
    842193 8k3v:B (3.1) BS01 UD1 2.4.1.16 GO:0000920 ... P08004 37553334
    842194 8k3w:A (2.91) BS01 UD1 2.4.1.16 GO:0000920 ... P08004 37553334
    842195 8k3w:B (2.91) BS01 UD1 2.4.1.16 GO:0000920 ... P08004 37553334
    842196 8k3x:A (2.86) BS01 BGI 2.4.1.16 GO:0000920 ... P08004 37553334
    842197 8k3x:B (2.86) BS01 BGI 2.4.1.16 GO:0000920 ... P08004 37553334
    842198 8k3y:B (4.42) BS01 ADP 3.4.21.53 GO:0004176 ... A0A059VAZ3 37957149
    842199 8k3y:C (4.42) BS01 ADP 3.4.21.53 GO:0004176 ... A0A059VAZ3 37957149
    842200 8k3y:D (4.42) BS01 ADP 3.4.21.53 GO:0004176 ... A0A059VAZ3 37957149

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).