SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    842201 8k3y:E (4.42) BS01 ADP 3.4.21.53 GO:0004176 ... A0A059VAZ3 37957149
    842202 8k40:A (2.6) BS01 FAD ? GO:0000166 ... A0A934NG65 37857791
    842203 8k40:B (2.6) BS01 FAD ? GO:0000166 ... A0A934NG65 37857791
    842204 8k41:A (2.39) BS01 NDP ? GO:0000166 ... A0A934NG65 37857791
    842205 8k41:A (2.39) BS02 FAD ? GO:0000166 ... A0A934NG65 37857791
    842206 8k42:R (2.64) BS01 peptide ? N/A B4Y048 38480794
    842207 8k42:S (2.64) BS01 peptide ? N/A B4Y048 38480794
    842208 8k42:T (2.64) BS01 peptide ? N/A B4Y048 38480794
    842209 8k42:U (2.64) BS01 peptide ? N/A B4Y048 38480794
    842210 8k42:V (2.64) BS01 peptide ? N/A B4Y048 38480794
    842211 8k42:V (2.64) BS02 peptide ? N/A B4Y048 38480794
    842212 8k42:W (2.64) BS01 peptide ? N/A B4Y048 38480794
    842213 8k49:R (2.9) BS01 peptide ? N/A B4Y048 38480794
    842214 8k49:S (2.9) BS01 peptide ? N/A B4Y048 38480794
    842215 8k49:S (2.9) BS02 peptide ? N/A B4Y048 38480794
    842216 8k49:T (2.9) BS01 peptide ? N/A B4Y048 38480794
    842217 8k4b:A (3.9) BS01 ATP 3.4.22.- GO:0005524 ... A0A0H2ZPI8 37935699
    842218 8k4b:A (3.9) BS02 ATP 3.4.22.- GO:0005524 ... A0A0H2ZPI8 37935699
    842219 8k4b:B (3.9) BS01 ATP 3.4.22.- GO:0005524 ... A0A0H2ZPI8 37935699
    842220 8k4b:B (3.9) BS02 ATP 3.4.22.- GO:0005524 ... A0A0H2ZPI8 37935699
    842221 8k4c:A (2.1) BS01 VIC 3.1.4.53 GO:0004114 ... Q08499 37918035
    842222 8k4c:A (2.1) BS02 ZN 3.1.4.53 GO:0004114 ... Q08499 37918035
    842223 8k4c:B (2.1) BS01 VIC 3.1.4.53 GO:0004114 ... Q08499 37918035
    842224 8k4c:B (2.1) BS02 ZN 3.1.4.53 GO:0004114 ... Q08499 37918035
    842225 8k4d:A (3.52) BS01 peptide N/A N/A Q8N3U4 N/A
    842226 8k4e:B (3.4) BS01 rna N/A GO:0000028 ... P0A7V0 39588766
    842227 8k4e:C (3.4) BS01 rna N/A GO:0000028 ... P0A7V3 39588766
    842228 8k4e:D (3.4) BS01 rna N/A GO:0000028 ... P0A7V8 39588766
    842229 8k4e:E (3.4) BS01 rna N/A GO:0000028 ... P0A7W1 39588766
    842230 8k4e:F (3.4) BS01 rna N/A GO:0002181 ... P02358 39588766
    842231 8k4e:G (3.4) BS01 rna N/A GO:0000028 ... P02359 39588766
    842232 8k4e:H (3.4) BS01 rna N/A GO:0000028 ... P0A7W7 39588766
    842233 8k4e:I (3.4) BS01 rna N/A GO:0000049 ... P0A7X3 39588766
    842234 8k4e:J (3.4) BS01 rna N/A GO:0000049 ... P0A7R5 39588766
    842235 8k4e:K (3.4) BS01 rna N/A GO:0002181 ... P0A7R9 39588766
    842236 8k4e:L (3.4) BS01 rna N/A GO:0000049 ... P0A7S3 39588766
    842237 8k4e:M (3.4) BS01 rna N/A GO:0000049 ... P0A7S9 39588766
    842238 8k4e:N (3.4) BS01 rna N/A GO:0000028 ... P0AG59 39588766
    842239 8k4e:O (3.4) BS01 rna N/A GO:0000028 ... P0ADZ4 39588766
    842240 8k4e:P (3.4) BS01 rna N/A GO:0000028 ... P0A7T3 39588766
    842241 8k4e:Q (3.4) BS01 rna N/A GO:0000028 ... P0AG63 39588766
    842242 8k4e:R (3.4) BS01 rna N/A GO:0002181 ... P0A7T7 39588766
    842243 8k4e:S (3.4) BS01 rna N/A GO:0000028 ... P0A7U3 39588766
    842244 8k4e:T (3.4) BS01 rna N/A GO:0000028 ... P0A7U7 39588766
    842245 8k4e:X (3.4) BS01 rna N/A GO:0000028 ... P68679 39588766
    842246 8k4f:A (2.48) BS01 SO4 1.3.5.2 GO:0004151 ... Q02127 37870434
    842247 8k4f:A (2.48) BS02 FMN 1.3.5.2 GO:0004151 ... Q02127 37870434
    842248 8k4f:A (2.48) BS03 OG6 1.3.5.2 GO:0004151 ... Q02127 37870434
    842249 8k4f:A (2.48) BS04 SO4 1.3.5.2 GO:0004151 ... Q02127 37870434
    842250 8k4f:A (2.48) BS05 SO4 1.3.5.2 GO:0004151 ... Q02127 37870434
    842251 8k4f:A (2.48) BS06 FJW 1.3.5.2 GO:0004151 ... Q02127 37870434
    842252 8k4h:A (1.95) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 37918035
    842253 8k4h:A (1.95) BS02 R75 3.1.4.53 GO:0004114 ... Q08499 37918035
    842254 8k4h:B (1.95) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 37918035
    842255 8k4h:B (1.95) BS02 R75 3.1.4.53 GO:0004114 ... Q08499 37918035
    842256 8k4k:A (1.7) BS01 NAP N/A N/A P30043 39339186
    842257 8k4k:A (1.7) BS02 VE2 N/A N/A P30043 39339186
    842258 8k4k:B (1.7) BS01 NAP N/A N/A P30043 39339186
    842259 8k4k:B (1.7) BS02 VE2 N/A N/A P30043 39339186
    842260 8k4l:A (2.1) BS01 dna ? GO:0003700 ... Q16656 38055835
    842261 8k4l:A (2.1) BS02 dna ? GO:0003700 ... Q16656 38055835
    842262 8k4l:B (2.1) BS01 dna ? GO:0003700 ... Q16656 38055835
    842263 8k4l:B (2.1) BS02 dna ? GO:0003700 ... Q16656 38055835
    842264 8k4n:D (2.83) BS01 VF0 ? GO:0004930 ... Q9UPC5 N/A
    842265 8k4r:A (2.3) BS01 VPI ? GO:0005737 ... Q76KY3 37870408
    842266 8k4r:C (2.3) BS01 VPI ? GO:0005737 ... Q76KY3 37870408
    842267 8k4s:E (2.9) BS01 JW0 N/A GO:0004930 ... P0ABE7
    P42212
    Q96LA9
    39476841
    842268 8k4t:A (2.3) BS01 peptide N/A N/A P04439 N/A
    842269 8k4t:D (2.3) BS01 peptide N/A N/A P04439 N/A
    842270 8k4u:B (3.2) BS01 ZN N/A GO:0006508 ... A0A0P0IB69 39082798
    842271 8k4v:A (3.095) BS01 peptide N/A N/A P04439 N/A
    842272 8k4v:D (3.095) BS01 peptide N/A N/A P04439 N/A
    842273 8k4v:G (3.095) BS01 peptide N/A N/A P04439 N/A
    842274 8k4v:J (3.095) BS01 peptide N/A N/A P04439 N/A
    842275 8k4z:A (1.7) BS01 peptide 3.4.24.23 GO:0004222 ... P09237 N/A
    842276 8k4z:A (1.7) BS02 CA 3.4.24.23 GO:0004222 ... P09237 N/A
    842277 8k4z:A (1.7) BS03 CA 3.4.24.23 GO:0004222 ... P09237 N/A
    842278 8k4z:A (1.7) BS04 ZN 3.4.24.23 GO:0004222 ... P09237 N/A
    842279 8k4z:A (1.7) BS05 ZN 3.4.24.23 GO:0004222 ... P09237 N/A
    842280 8k50:A (2.8) BS01 peptide N/A N/A P04439 N/A
    842281 8k50:D (2.8) BS01 peptide N/A N/A P04439 N/A
    842282 8k50:G (2.8) BS01 peptide N/A N/A P04439 N/A
    842283 8k50:J (2.8) BS01 peptide N/A N/A P04439 N/A
    842284 8k52:A (2.94) BS01 UDP N/A GO:0004100 ... G4Z2L3 39519219
    842285 8k52:B (2.94) BS01 UDP N/A GO:0004100 ... G4Z2L3 39519219
    842286 8k56:A (2.42) BS01 I7G N/A GO:0016407 ... A0A088DBJ8 N/A
    842287 8k56:B (2.42) BS01 I7G N/A GO:0016407 ... A0A088DBJ8 N/A
    842288 8k58:C (3.15) BS01 dna N/A GO:0000345 ... P0A8V2 N/A
    842289 8k58:C (3.15) BS02 dna N/A GO:0000345 ... P0A8V2 N/A
    842290 8k58:C (3.15) BS03 rna N/A GO:0000345 ... P0A8V2 N/A
    842291 8k58:D (3.15) BS01 dna N/A GO:0000287 ... P0A8T7 N/A
    842292 8k58:D (3.15) BS02 dna N/A GO:0000287 ... P0A8T7 N/A
    842293 8k58:D (3.15) BS03 rna N/A GO:0000287 ... P0A8T7 N/A
    842294 8k59:C (3.5) BS01 dna N/A GO:0000345 ... P0A8V2 N/A
    842295 8k59:C (3.5) BS02 dna N/A GO:0000345 ... P0A8V2 N/A
    842296 8k59:C (3.5) BS03 rna N/A GO:0000345 ... P0A8V2 N/A
    842297 8k59:D (3.5) BS01 dna N/A GO:0000287 ... P0A8T7 N/A
    842298 8k59:D (3.5) BS02 dna N/A GO:0000287 ... P0A8T7 N/A
    842299 8k59:D (3.5) BS03 rna N/A GO:0000287 ... P0A8T7 N/A
    842300 8k59:F (3.5) BS01 dna N/A N/A P00579 N/A
    842301 8k59:F (3.5) BS02 dna N/A N/A P00579 N/A
    842302 8k59:F (3.5) BS03 rna N/A N/A P00579 N/A
    842303 8k5a:C (3.3) BS01 dna N/A GO:0000345 ... P0A8V2 N/A
    842304 8k5a:C (3.3) BS02 dna N/A GO:0000345 ... P0A8V2 N/A
    842305 8k5a:C (3.3) BS03 rna N/A GO:0000345 ... P0A8V2 N/A
    842306 8k5a:D (3.3) BS01 dna N/A GO:0000287 ... P0A8T7 N/A
    842307 8k5a:D (3.3) BS02 dna N/A GO:0000287 ... P0A8T7 N/A
    842308 8k5a:D (3.3) BS03 rna N/A GO:0000287 ... P0A8T7 N/A
    842309 8k5b:A (3.43) BS01 NIO ? GO:0001781 ... Q8TDS4 37932263
    842310 8k5c:A (3.13) BS01 OJX ? GO:0001781 ... Q8TDS4 37932263
    842311 8k5d:A (3.74) BS01 OKL ? GO:0001781 ... Q8TDS4 37932263
    842312 8k5i:A (1.92) BS01 FE N/A N/A N/A 38013086
    842313 8k5i:A (1.92) BS02 AVJ N/A N/A N/A 38013086
    842314 8k5i:A (1.92) BS03 GS1 N/A N/A N/A 38013086
    842315 8k5j:A (1.3) BS01 FE N/A N/A N/A 38013086
    842316 8k5j:A (1.3) BS02 AVJ N/A N/A N/A 38013086
    842317 8k5k:A (1.81) BS01 FE N/A N/A N/A 38013086
    842318 8k5m:A () BS01 HEM N/A N/A N/A N/A
    842319 8k5m:A () BS02 CA N/A N/A N/A N/A
    842320 8k5n:A (2.2) BS01 I7M ? N/A Q9NZQ7 38109261
    842321 8k5n:B (2.2) BS01 I7M ? N/A Q9NZQ7 38109261
    842322 8k5o:1 (2.42) BS01 peptide ? GO:0005886 ... A0A0X8X9B2 38411333
    842323 8k5o:1 (2.42) BS02 A1LZM ? GO:0005886 ... A0A0X8X9B2 38411333
    842324 8k5o:1 (2.42) BS03 A1LZM ? GO:0005886 ... A0A0X8X9B2 38411333
    842325 8k5o:1 (2.42) BS04 A1LZM ? GO:0005886 ... A0A0X8X9B2 38411333
    842326 8k5o:1 (2.42) BS05 A1LZM ? GO:0005886 ... A0A0X8X9B2 38411333
    842327 8k5o:1 (2.42) BS06 A1LZQ ? GO:0005886 ... A0A0X8X9B2 38411333
    842328 8k5o:3 (2.42) BS01 A1LZM ? GO:0005886 ... A0A120MZP7 38411333
    842329 8k5o:3 (2.42) BS02 LYC ? GO:0005886 ... A0A120MZP7 38411333
    842330 8k5o:3 (2.42) BS03 A1LZM ? GO:0005886 ... A0A120MZP7 38411333
    842331 8k5o:3 (2.42) BS04 A1LZM ? GO:0005886 ... A0A120MZP7 38411333
    842332 8k5o:3 (2.42) BS05 A1LZM ? GO:0005886 ... A0A120MZP7 38411333
    842333 8k5o:3 (2.42) BS06 A1LZM ? GO:0005886 ... A0A120MZP7 38411333
    842334 8k5o:4 (2.42) BS01 A1LZM ? GO:0005886 ... A0A110B4Z6 38411333
    842335 8k5o:4 (2.42) BS02 LYC ? GO:0005886 ... A0A110B4Z6 38411333
    842336 8k5o:4 (2.42) BS03 A1LZM ? GO:0005886 ... A0A110B4Z6 38411333
    842337 8k5o:4 (2.42) BS04 A1LZM ? GO:0005886 ... A0A110B4Z6 38411333
    842338 8k5o:6 (2.42) BS01 peptide ? GO:0005886 ... A0A0X8XBE4 38411333
    842339 8k5o:6 (2.42) BS02 LYC ? GO:0005886 ... A0A0X8XBE4 38411333
    842340 8k5o:6 (2.42) BS03 A1LZM ? GO:0005886 ... A0A0X8XBE4 38411333
    842341 8k5o:6 (2.42) BS04 A1LZM ? GO:0005886 ... A0A0X8XBE4 38411333
    842342 8k5o:6 (2.42) BS05 A1LZM ? GO:0005886 ... A0A0X8XBE4 38411333
    842343 8k5o:6 (2.42) BS06 A1LZM ? GO:0005886 ... A0A0X8XBE4 38411333
    842344 8k5o:7 (2.42) BS01 peptide ? GO:0005886 ... A0A0X8X9B2 38411333
    842345 8k5o:7 (2.42) BS02 A1LZM ? GO:0005886 ... A0A0X8X9B2 38411333
    842346 8k5o:7 (2.42) BS03 A1LZM ? GO:0005886 ... A0A0X8X9B2 38411333
    842347 8k5o:7 (2.42) BS04 A1LZM ? GO:0005886 ... A0A0X8X9B2 38411333
    842348 8k5o:7 (2.42) BS05 A1LZQ ? GO:0005886 ... A0A0X8X9B2 38411333
    842349 8k5o:7 (2.42) BS06 A1LZM ? GO:0005886 ... A0A0X8X9B2 38411333
    842350 8k5o:C (2.42) BS01 HEC ? GO:0005506 ... A0A0X8X829 38411333
    842351 8k5o:C (2.42) BS02 HEC ? GO:0005506 ... A0A0X8X829 38411333
    842352 8k5o:C (2.42) BS03 HEC ? GO:0005506 ... A0A0X8X829 38411333
    842353 8k5o:C (2.42) BS04 HEC ? GO:0005506 ... A0A0X8X829 38411333
    842354 8k5o:F (2.42) BS01 peptide ? GO:0005886 ... A0A0X8XBE4 38411333
    842355 8k5o:F (2.42) BS02 A1LZM ? GO:0005886 ... A0A0X8XBE4 38411333
    842356 8k5o:F (2.42) BS03 A1LZM ? GO:0005886 ... A0A0X8XBE4 38411333
    842357 8k5o:F (2.42) BS04 A1LZM ? GO:0005886 ... A0A0X8XBE4 38411333
    842358 8k5o:F (2.42) BS05 A1LZM ? GO:0005886 ... A0A0X8XBE4 38411333
    842359 8k5o:F (2.42) BS06 A1LZM ? GO:0005886 ... A0A0X8XBE4 38411333
    842360 8k5o:G (2.42) BS01 peptide ? GO:0005886 ... A0A0X8X9B2 38411333
    842361 8k5o:G (2.42) BS02 A1LZM ? GO:0005886 ... A0A0X8X9B2 38411333
    842362 8k5o:G (2.42) BS03 A1LZM ? GO:0005886 ... A0A0X8X9B2 38411333
    842363 8k5o:G (2.42) BS04 A1LZM ? GO:0005886 ... A0A0X8X9B2 38411333
    842364 8k5o:G (2.42) BS05 A1LZQ ? GO:0005886 ... A0A0X8X9B2 38411333
    842365 8k5o:G (2.42) BS06 A1LZM ? GO:0005886 ... A0A0X8X9B2 38411333
    842366 8k5o:K (2.42) BS01 peptide ? GO:0005886 ... A0A0X8XBE4 38411333
    842367 8k5o:K (2.42) BS02 peptide ? GO:0005886 ... A0A0X8XBE4 38411333
    842368 8k5o:K (2.42) BS03 A1LZM ? GO:0005886 ... A0A0X8XBE4 38411333
    842369 8k5o:K (2.42) BS04 A1LZM ? GO:0005886 ... A0A0X8XBE4 38411333
    842370 8k5o:K (2.42) BS05 A1LZM ? GO:0005886 ... A0A0X8XBE4 38411333
    842371 8k5o:K (2.42) BS06 A1LZM ? GO:0005886 ... A0A0X8XBE4 38411333
    842372 8k5o:K (2.42) BS07 A1LZM ? GO:0005886 ... A0A0X8XBE4 38411333
    842373 8k5o:K (2.42) BS08 A1LZM ? GO:0005886 ... A0A0X8XBE4 38411333
    842374 8k5o:L (2.42) BS01 peptide ? GO:0009772 ... A0A0X8XAH6 38411333
    842375 8k5o:L (2.42) BS02 A1LZM ? GO:0009772 ... A0A0X8XAH6 38411333
    842376 8k5o:L (2.42) BS03 A1LZM ? GO:0009772 ... A0A0X8XAH6 38411333
    842377 8k5o:L (2.42) BS04 A1LZP ? GO:0009772 ... A0A0X8XAH6 38411333
    842378 8k5o:L (2.42) BS05 UQ8 ? GO:0009772 ... A0A0X8XAH6 38411333
    842379 8k5o:L (2.42) BS06 FE ? GO:0009772 ... A0A0X8XAH6 38411333
    842380 8k5o:L (2.42) BS07 A1LZM ? GO:0009772 ... A0A0X8XAH6 38411333
    842381 8k5o:L (2.42) BS08 A1LZP ? GO:0009772 ... A0A0X8XAH6 38411333
    842382 8k5o:L (2.42) BS09 MQ8 ? GO:0009772 ... A0A0X8XAH6 38411333
    842383 8k5o:M (2.42) BS01 A1LZM ? GO:0009772 ... A0A0X8X847 38411333
    842384 8k5o:M (2.42) BS02 A1LZM ? GO:0009772 ... A0A0X8X847 38411333
    842385 8k5o:M (2.42) BS03 A1LZP ? GO:0009772 ... A0A0X8X847 38411333
    842386 8k5o:M (2.42) BS04 FE ? GO:0009772 ... A0A0X8X847 38411333
    842387 8k5o:M (2.42) BS05 A1LZM ? GO:0009772 ... A0A0X8X847 38411333
    842388 8k5o:M (2.42) BS06 A1LZM ? GO:0009772 ... A0A0X8X847 38411333
    842389 8k5o:M (2.42) BS07 A1LZP ? GO:0009772 ... A0A0X8X847 38411333
    842390 8k5o:M (2.42) BS08 MQ8 ? GO:0009772 ... A0A0X8X847 38411333
    842391 8k5o:M (2.42) BS09 MQ8 ? GO:0009772 ... A0A0X8X847 38411333
    842392 8k5o:N (2.42) BS01 peptide ? GO:0005886 ... A0A0X8X9B2 38411333
    842393 8k5o:N (2.42) BS02 A1LZM ? GO:0005886 ... A0A0X8X9B2 38411333
    842394 8k5o:N (2.42) BS03 A1LZM ? GO:0005886 ... A0A0X8X9B2 38411333
    842395 8k5o:N (2.42) BS04 A1LZM ? GO:0005886 ... A0A0X8X9B2 38411333
    842396 8k5o:N (2.42) BS05 A1LZM ? GO:0005886 ... A0A0X8X9B2 38411333
    842397 8k5o:N (2.42) BS06 A1LZQ ? GO:0005886 ... A0A0X8X9B2 38411333
    842398 8k5o:N (2.42) BS07 A1LZM ? GO:0005886 ... A0A0X8X9B2 38411333
    842399 8k5o:P (2.42) BS01 peptide ? GO:0005886 ... A0A0X8XBE4 38411333
    842400 8k5o:P (2.42) BS02 peptide ? GO:0005886 ... A0A0X8XBE4 38411333

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).