SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    842401 8jjr:b (2.8) BS13 CLA N/A GO:0009579 ... N/A 38493166
    842402 8jjr:b (2.8) BS14 CLA N/A GO:0009579 ... N/A 38493166
    842403 8jjr:b (2.8) BS15 CLA N/A GO:0009579 ... N/A 38493166
    842404 8jjr:b (2.8) BS16 CLA N/A GO:0009579 ... N/A 38493166
    842405 8jjr:b (2.8) BS17 CLA N/A GO:0009579 ... N/A 38493166
    842406 8jjr:b (2.8) BS18 CLA N/A GO:0009579 ... N/A 38493166
    842407 8jjr:b (2.8) BS19 CLA N/A GO:0009579 ... N/A 38493166
    842408 8jjr:b (2.8) BS20 CLA N/A GO:0009579 ... N/A 38493166
    842409 8jjr:b (2.8) BS21 CLA N/A GO:0009579 ... N/A 38493166
    842410 8jjr:b (2.8) BS22 CLA N/A GO:0009579 ... N/A 38493166
    842411 8jjr:b (2.8) BS23 CLA N/A GO:0009579 ... N/A 38493166
    842412 8jjr:b (2.8) BS24 CLA N/A GO:0009579 ... N/A 38493166
    842413 8jjr:b (2.8) BS25 CLA N/A GO:0009579 ... N/A 38493166
    842414 8jjr:b (2.8) BS26 CLA N/A GO:0009579 ... N/A 38493166
    842415 8jjr:b (2.8) BS27 CLA N/A GO:0009579 ... N/A 38493166
    842416 8jjr:b (2.8) BS28 CLA N/A GO:0009579 ... N/A 38493166
    842417 8jjr:b (2.8) BS29 CLA N/A GO:0009579 ... N/A 38493166
    842418 8jjr:b (2.8) BS30 CLA N/A GO:0009579 ... N/A 38493166
    842419 8jjr:b (2.8) BS31 CLA N/A GO:0009579 ... N/A 38493166
    842420 8jjr:b (2.8) BS32 CLA N/A GO:0009579 ... N/A 38493166
    842421 8jjr:b (2.8) BS33 CLA N/A GO:0009579 ... N/A 38493166
    842422 8jjr:b (2.8) BS34 CLA N/A GO:0009579 ... N/A 38493166
    842423 8jjr:b (2.8) BS35 CLA N/A GO:0009579 ... N/A 38493166
    842424 8jjr:b (2.8) BS36 CLA N/A GO:0009579 ... N/A 38493166
    842425 8jjr:b (2.8) BS37 PQN N/A GO:0009579 ... N/A 38493166
    842426 8jjr:b (2.8) BS38 DD6 N/A GO:0009579 ... N/A 38493166
    842427 8jjr:b (2.8) BS39 CLA N/A GO:0009579 ... N/A 38493166
    842428 8jjr:b (2.8) BS40 CLA N/A GO:0009579 ... N/A 38493166
    842429 8jjr:c (2.8) BS01 SF4 N/A GO:0009055 ... N/A 38493166
    842430 8jjr:c (2.8) BS02 SF4 N/A GO:0009055 ... N/A 38493166
    842431 8jjr:f (2.8) BS01 CLA N/A GO:0009522 ... A0AA36N3P6 38493166
    842432 8jjr:f (2.8) BS02 CLA N/A GO:0009522 ... A0AA36N3P6 38493166
    842433 8jjr:f (2.8) BS03 CLA N/A GO:0009522 ... A0AA36N3P6 38493166
    842434 8jjr:f (2.8) BS04 CLA N/A GO:0009522 ... A0AA36N3P6 38493166
    842435 8jjr:f (2.8) BS05 CLA N/A GO:0009522 ... A0AA36N3P6 38493166
    842436 8jjr:i (2.8) BS01 CLA N/A GO:0009522 ... A0AA36J2Y9 38493166
    842437 8jjr:i (2.8) BS02 CLA N/A GO:0009522 ... A0AA36J2Y9 38493166
    842438 8jjr:i (2.8) BS03 CLA N/A GO:0009522 ... A0AA36J2Y9 38493166
    842439 8jjr:i (2.8) BS04 DD6 N/A GO:0009522 ... A0AA36J2Y9 38493166
    842440 8jjr:j (2.8) BS01 CLA N/A N/A A0AA36N211 38493166
    842441 8jjr:j (2.8) BS02 CLA N/A N/A A0AA36N211 38493166
    842442 8jjr:j (2.8) BS03 CLA N/A N/A A0AA36N211 38493166
    842443 8jjr:j (2.8) BS04 CLA N/A N/A A0AA36N211 38493166
    842444 8jjr:j (2.8) BS05 UIX N/A N/A A0AA36N211 38493166
    842445 8jjr:l (2.8) BS01 CLA N/A GO:0009522 ... A0AA36N262 38493166
    842446 8jjr:l (2.8) BS02 CLA N/A GO:0009522 ... A0AA36N262 38493166
    842447 8jjr:l (2.8) BS03 CLA N/A GO:0009522 ... A0AA36N262 38493166
    842448 8jjr:l (2.8) BS04 CLA N/A GO:0009522 ... A0AA36N262 38493166
    842449 8jjr:l (2.8) BS05 CLA N/A GO:0009522 ... A0AA36N262 38493166
    842450 8jjr:l (2.8) BS06 CLA N/A GO:0009522 ... A0AA36N262 38493166
    842451 8jjr:l (2.8) BS07 CLA N/A GO:0009522 ... A0AA36N262 38493166
    842452 8jjr:l (2.8) BS08 CLA N/A GO:0009522 ... A0AA36N262 38493166
    842453 8jjr:l (2.8) BS09 CLA N/A GO:0009522 ... A0AA36N262 38493166
    842454 8jjr:l (2.8) BS10 CLA N/A GO:0009522 ... A0AA36N262 38493166
    842455 8jjr:l (2.8) BS11 CLA N/A GO:0009522 ... A0AA36N262 38493166
    842456 8jjr:l (2.8) BS12 CLA N/A GO:0009522 ... A0AA36N262 38493166
    842457 8jjr:l (2.8) BS13 CLA N/A GO:0009522 ... A0AA36N262 38493166
    842458 8jjr:l (2.8) BS14 CLA N/A GO:0009522 ... A0AA36N262 38493166
    842459 8jjr:m (2.8) BS01 CLA N/A N/A A0AA36N6D6 38493166
    842460 8jjr:m (2.8) BS02 CLA N/A N/A A0AA36N6D6 38493166
    842461 8jjr:r (2.8) BS01 CLA N/A N/A A0AA36JF81 38493166
    842462 8jjr:r (2.8) BS02 CLA N/A N/A A0AA36JF81 38493166
    842463 8jjr:r (2.8) BS03 CLA N/A N/A A0AA36JF81 38493166
    842464 8jjr:r (2.8) BS04 DD6 N/A N/A A0AA36JF81 38493166
    842465 8jjr:r (2.8) BS05 CLA N/A N/A A0AA36JF81 38493166
    842466 8jjr:r (2.8) BS06 CLA N/A N/A A0AA36JF81 38493166
    842467 8jjr:r (2.8) BS07 DD6 N/A N/A A0AA36JF81 38493166
    842468 8jjr:r (2.8) BS08 DD6 N/A N/A A0AA36JF81 38493166
    842469 8jjs:A (1.534) BS01 peptide 3.6.5.2 GO:0000139 ... P01116 37463267
    842470 8jjs:A (1.534) BS02 GDP 3.6.5.2 GO:0000139 ... P01116 37463267
    842471 8jjt:A (1.88) BS01 UD1 N/A GO:0016757 ... N/A 38395953
    842472 8jjt:B (1.88) BS01 UD1 N/A GO:0016757 ... N/A 38395953
    842473 8jjt:C (1.88) BS01 UD1 N/A GO:0016757 ... N/A 38395953
    842474 8jjv:A (1.23) BS01 peptide N/A N/A N/A 38105512
    842475 8jk3:B (1.5) BS01 MG 3.5.2.6 GO:0008800 ... Q3SAW3 N/A
    842476 8jk3:B (1.5) BS02 MG 3.5.2.6 GO:0008800 ... Q3SAW3 N/A
    842477 8jk5:A (1.7) BS01 FE 3.6.1.41 GO:0005515 ... A0A0H2URF8 38701795
    842478 8jk5:A (1.7) BS02 FE 3.6.1.41 GO:0005515 ... A0A0H2URF8 38701795
    842479 8jk8:A (1.95) BS01 FE 3.6.1.41 GO:0005515 ... A0A0H2URF8 38701795
    842480 8jk8:A (1.95) BS02 FE 3.6.1.41 GO:0005515 ... A0A0H2URF8 38701795
    842481 8jk8:A (1.95) BS03 UDP 3.6.1.41 GO:0005515 ... A0A0H2URF8 38701795
    842482 8jk9:A (1.6) BS01 FE 3.6.1.41 GO:0005515 ... A0A0H2URF8 38701795
    842483 8jk9:A (1.6) BS02 FE 3.6.1.41 GO:0005515 ... A0A0H2URF8 38701795
    842484 8jk9:A (1.6) BS03 GDP 3.6.1.41 GO:0005515 ... A0A0H2URF8 38701795
    842485 8jk9:A (1.6) BS04 MG 3.6.1.41 GO:0005515 ... A0A0H2URF8 38701795
    842486 8jk9:A (1.6) BS05 MG 3.6.1.41 GO:0005515 ... A0A0H2URF8 38701795
    842487 8jka:A (2.25) BS01 FE 3.6.1.41 GO:0005515 ... A0A0H2URF8 38701795
    842488 8jka:A (2.25) BS02 FE 3.6.1.41 GO:0005515 ... A0A0H2URF8 38701795
    842489 8jka:A (2.25) BS03 AMP 3.6.1.41 GO:0005515 ... A0A0H2URF8 38701795
    842490 8jke:C (3.67) BS01 dna 2.7.7.6 GO:0000345 ... Q9L0L0 38427710
    842491 8jke:C (3.67) BS02 dna 2.7.7.6 GO:0000345 ... Q9L0L0 38427710
    842492 8jke:D (3.67) BS01 dna 2.7.7.6 GO:0000287 ... Q8CJT1 38427710
    842493 8jke:D (3.67) BS02 dna 2.7.7.6 GO:0000287 ... Q8CJT1 38427710
    842494 8jke:D (3.67) BS03 ZN 2.7.7.6 GO:0000287 ... Q8CJT1 38427710
    842495 8jke:D (3.67) BS04 ZN 2.7.7.6 GO:0000287 ... Q8CJT1 38427710
    842496 8jke:F (3.67) BS01 dna ? GO:0000976 ... P18183 38427710
    842497 8jke:F (3.67) BS02 dna ? GO:0000976 ... P18183 38427710
    842498 8jke:H (3.67) BS01 dna ? GO:0009303 ... Q9L0Q9 38427710
    842499 8jke:H (3.67) BS02 dna ? GO:0009303 ... Q9L0Q9 38427710
    842500 8jke:I (3.67) BS01 dna ? GO:0000160 ... P25941 38427710
    842501 8jke:I (3.67) BS02 dna ? GO:0000160 ... P25941 38427710
    842502 8jke:J (3.67) BS01 dna ? GO:0000160 ... P25941 38427710
    842503 8jke:J (3.67) BS02 dna ? GO:0000160 ... P25941 38427710
    842504 8jkk:A (2.3) BS01 dna ? N/A A8P1J0 38324471
    842505 8jkk:A (2.3) BS02 dna ? N/A A8P1J0 38324471
    842506 8jkk:A (2.3) BS03 MN ? N/A A8P1J0 38324471
    842507 8jkk:D (2.3) BS01 dna ? N/A A8P1J0 38324471
    842508 8jkk:D (2.3) BS02 dna ? N/A A8P1J0 38324471
    842509 8jkk:D (2.3) BS03 MN ? N/A A8P1J0 38324471
    842510 8jkk:G (2.3) BS01 dna ? N/A A8P1J0 38324471
    842511 8jkk:G (2.3) BS02 dna ? N/A A8P1J0 38324471
    842512 8jkk:G (2.3) BS03 MN ? N/A A8P1J0 38324471
    842513 8jkk:J (2.3) BS01 dna ? N/A A8P1J0 38324471
    842514 8jkk:J (2.3) BS02 dna ? N/A A8P1J0 38324471
    842515 8jkk:J (2.3) BS03 MN ? N/A A8P1J0 38324471
    842516 8jkl:C (2.94) BS01 dna ? GO:0000976 ... F2Z3D5 37683642
    842517 8jkl:C (2.94) BS02 dna ? GO:0000976 ... F2Z3D5 37683642
    842518 8jkl:D (2.94) BS01 dna ? GO:0000976 ... F2Z3D5 37683642
    842519 8jkl:D (2.94) BS02 dna ? GO:0000976 ... F2Z3D5 37683642
    842520 8jkl:G (2.94) BS01 dna ? GO:0000976 ... F2Z3D5 37683642
    842521 8jkl:G (2.94) BS02 dna ? GO:0000976 ... F2Z3D5 37683642
    842522 8jkl:H (2.94) BS01 dna ? GO:0000976 ... F2Z3D5 37683642
    842523 8jkl:H (2.94) BS02 dna ? GO:0000976 ... F2Z3D5 37683642
    842524 8jkn:C (2.92) BS01 dna ? GO:0000976 ... F2Z3D5 37683642
    842525 8jkn:C (2.92) BS02 dna ? GO:0000976 ... F2Z3D5 37683642
    842526 8jkn:D (2.92) BS01 dna ? GO:0000976 ... F2Z3D5 37683642
    842527 8jkn:D (2.92) BS02 dna ? GO:0000976 ... F2Z3D5 37683642
    842528 8jkn:G (2.92) BS01 dna ? GO:0000976 ... F2Z3D5 37683642
    842529 8jkn:G (2.92) BS02 dna ? GO:0000976 ... F2Z3D5 37683642
    842530 8jkn:H (2.92) BS01 dna ? GO:0000976 ... F2Z3D5 37683642
    842531 8jkn:H (2.92) BS02 dna ? GO:0000976 ... F2Z3D5 37683642
    842532 8jko:C (2.95) BS01 dna ? GO:0000976 ... F2Z3D5 37683642
    842533 8jko:C (2.95) BS02 dna ? GO:0000976 ... F2Z3D5 37683642
    842534 8jko:D (2.95) BS01 dna ? GO:0000976 ... F2Z3D5 37683642
    842535 8jko:D (2.95) BS02 dna ? GO:0000976 ... F2Z3D5 37683642
    842536 8jko:G (2.95) BS01 dna ? GO:0000976 ... F2Z3D5 37683642
    842537 8jko:G (2.95) BS02 dna ? GO:0000976 ... F2Z3D5 37683642
    842538 8jko:H (2.95) BS01 dna ? GO:0000976 ... F2Z3D5 37683642
    842539 8jko:H (2.95) BS02 dna ? GO:0000976 ... F2Z3D5 37683642
    842540 8jkp:A (2.1) BS01 TMP 3.6.1.41 GO:0005515 ... A0A0H2URF8 38701795
    842541 8jkp:A (2.1) BS02 FE 3.6.1.41 GO:0005515 ... A0A0H2URF8 38701795
    842542 8jkp:A (2.1) BS03 FE 3.6.1.41 GO:0005515 ... A0A0H2URF8 38701795
    842543 8jkq:D (3.09) BS01 dna ? GO:0000976 ... F2Z3D5 37683642
    842544 8jkq:D (3.09) BS02 dna ? GO:0000976 ... F2Z3D5 37683642
    842545 8jkq:F (3.09) BS01 dna ? GO:0000976 ... F2Z3D5 37683642
    842546 8jkq:F (3.09) BS02 dna ? GO:0000976 ... F2Z3D5 37683642
    842547 8jkq:G (3.09) BS01 dna ? GO:0000976 ... F2Z3D5 37683642
    842548 8jkq:G (3.09) BS02 dna ? GO:0000976 ... F2Z3D5 37683642
    842549 8jkq:H (3.09) BS01 dna ? GO:0000976 ... F2Z3D5 37683642
    842550 8jkq:H (3.09) BS02 dna ? GO:0000976 ... F2Z3D5 37683642
    842551 8jkr:A (2.0) BS01 U5P 3.6.1.41 GO:0005515 ... A0A0H2URF8 38701795
    842552 8jkr:A (2.0) BS02 FE 3.6.1.41 GO:0005515 ... A0A0H2URF8 38701795
    842553 8jkr:A (2.0) BS03 FE 3.6.1.41 GO:0005515 ... A0A0H2URF8 38701795
    842554 8jks:C (3.3) BS01 dna ? GO:0000976 ... F2Z3D5 37683642
    842555 8jks:C (3.3) BS02 dna ? GO:0000976 ... F2Z3D5 37683642
    842556 8jks:D (3.3) BS01 dna ? GO:0000976 ... F2Z3D5 37683642
    842557 8jks:D (3.3) BS02 dna ? GO:0000976 ... F2Z3D5 37683642
    842558 8jks:G (3.3) BS01 dna ? GO:0000976 ... F2Z3D5 37683642
    842559 8jks:G (3.3) BS02 dna ? GO:0000976 ... F2Z3D5 37683642
    842560 8jks:H (3.3) BS01 dna ? GO:0000976 ... F2Z3D5 37683642
    842561 8jks:H (3.3) BS02 dna ? GO:0000976 ... F2Z3D5 37683642
    842562 8jku:A (2.57) BS01 NAP N/A GO:0016491 ... N/A 39609402
    842563 8jku:B (2.57) BS01 NAP N/A GO:0016491 ... N/A 39609402
    842564 8jkv:A (2.87) BS01 CLR 2.3.1.78 GO:0005765 ... Q68CP4 38769387
    842565 8jkv:B (2.87) BS01 CLR 2.3.1.78 GO:0005765 ... Q68CP4 38769387
    842566 8jkz:A (3.6) BS01 NAD ? N/A Q74DF6 38200015
    842567 8jl0:A (3.1) BS01 dna ? N/A Q74DF6 38200015
    842568 8jl0:A (3.1) BS02 rna ? N/A Q74DF6 38200015
    842569 8jl0:A (3.1) BS03 NAD ? N/A Q74DF6 38200015
    842570 8jl0:B (3.1) BS01 dna ? GO:0003676 ... Q74DF5 38200015
    842571 8jl0:B (3.1) BS02 rna ? GO:0003676 ... Q74DF5 38200015
    842572 8jl1:A (2.8) BS01 ACO 2.3.1.78 GO:0005765 ... Q68CP4 38769387
    842573 8jl1:B (2.8) BS01 ACO 2.3.1.78 GO:0005765 ... Q68CP4 38769387
    842574 8jl3:A (2.59) BS01 ACO 2.3.1.78 GO:0005765 ... Q68CP4 38769387
    842575 8jl3:A (2.59) BS02 CLR 2.3.1.78 GO:0005765 ... Q68CP4 38769387
    842576 8jl3:B (2.59) BS01 ACO 2.3.1.78 GO:0005765 ... Q68CP4 38769387
    842577 8jl3:B (2.59) BS02 CLR 2.3.1.78 GO:0005765 ... Q68CP4 38769387
    842578 8jl4:A (2.68) BS01 UV6 2.3.1.78 GO:0005765 ... Q68CP4 N/A
    842579 8jl4:A (2.68) BS02 COA 2.3.1.78 GO:0005765 ... Q68CP4 N/A
    842580 8jl4:A (2.68) BS03 CLR 2.3.1.78 GO:0005765 ... Q68CP4 N/A
    842581 8jl4:B (2.68) BS01 UV6 2.3.1.78 GO:0005765 ... Q68CP4 N/A
    842582 8jl4:B (2.68) BS02 COA 2.3.1.78 GO:0005765 ... Q68CP4 N/A
    842583 8jl4:B (2.68) BS03 CLR 2.3.1.78 GO:0005765 ... Q68CP4 N/A
    842584 8jl9:A (2.65) BS01 dna ? GO:0000786 ... P68431 37718728
    842585 8jl9:A (2.65) BS02 dna ? GO:0000786 ... P68431 37718728
    842586 8jl9:B (2.65) BS01 dna ? GO:0000781 ... P62805 37718728
    842587 8jl9:B (2.65) BS02 dna ? GO:0000781 ... P62805 37718728
    842588 8jl9:C (2.65) BS01 dna ? GO:0000786 ... P04908 37718728
    842589 8jl9:C (2.65) BS02 dna ? GO:0000786 ... P04908 37718728
    842590 8jl9:D (2.65) BS01 dna ? GO:0000786 ... P06899 37718728
    842591 8jl9:D (2.65) BS02 dna ? GO:0000786 ... P06899 37718728
    842592 8jl9:E (2.65) BS01 dna ? GO:0000786 ... P68431 37718728
    842593 8jl9:E (2.65) BS02 dna ? GO:0000786 ... P68431 37718728
    842594 8jl9:F (2.65) BS01 dna ? GO:0000781 ... P62805 37718728
    842595 8jl9:F (2.65) BS02 dna ? GO:0000781 ... P62805 37718728
    842596 8jl9:G (2.65) BS01 dna ? GO:0000786 ... P04908 37718728
    842597 8jl9:G (2.65) BS02 dna ? GO:0000786 ... P04908 37718728
    842598 8jl9:H (2.65) BS01 dna ? GO:0000786 ... P06899 37718728
    842599 8jl9:H (2.65) BS02 dna ? GO:0000786 ... P06899 37718728
    842600 8jla:A (3.44) BS01 dna ? GO:0000786 ... P68431 37718728

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).