SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    842601 8jla:A (3.44) BS02 dna ? GO:0000786 ... P68431 37718728
    842602 8jla:B (3.44) BS01 dna ? GO:0003677 ... P62805 37718728
    842603 8jla:B (3.44) BS02 dna ? GO:0003677 ... P62805 37718728
    842604 8jla:C (3.44) BS01 dna ? GO:0000786 ... P04908 37718728
    842605 8jla:C (3.44) BS02 dna ? GO:0000786 ... P04908 37718728
    842606 8jla:D (3.44) BS01 dna ? GO:0000786 ... P06899 37718728
    842607 8jla:E (3.44) BS01 dna ? GO:0000786 ... P68431 37718728
    842608 8jla:E (3.44) BS02 dna ? GO:0000786 ... P68431 37718728
    842609 8jla:F (3.44) BS01 dna ? GO:0003677 ... P62805 37718728
    842610 8jla:F (3.44) BS02 dna ? GO:0003677 ... P62805 37718728
    842611 8jla:G (3.44) BS01 dna ? GO:0000786 ... P04908 37718728
    842612 8jla:G (3.44) BS02 dna ? GO:0000786 ... P04908 37718728
    842613 8jla:H (3.44) BS01 dna ? GO:0000786 ... P06899 37718728
    842614 8jla:H (3.44) BS02 dna ? GO:0000786 ... P06899 37718728
    842615 8jlb:A (2.36) BS01 dna ? GO:0000786 ... Q71DI3 37718728
    842616 8jlb:A (2.36) BS02 dna ? GO:0000786 ... Q71DI3 37718728
    842617 8jlb:B (2.36) BS01 dna ? GO:0000781 ... P62805 37718728
    842618 8jlb:B (2.36) BS02 dna ? GO:0000781 ... P62805 37718728
    842619 8jlb:C (2.36) BS01 dna ? GO:0000786 ... P04908 37718728
    842620 8jlb:C (2.36) BS02 dna ? GO:0000786 ... P04908 37718728
    842621 8jlb:D (2.36) BS01 dna ? GO:0000786 ... P06899 37718728
    842622 8jlb:D (2.36) BS02 dna ? GO:0000786 ... P06899 37718728
    842623 8jlb:E (2.36) BS01 dna ? GO:0000786 ... Q71DI3 37718728
    842624 8jlb:E (2.36) BS02 dna ? GO:0000786 ... Q71DI3 37718728
    842625 8jlb:F (2.36) BS01 dna ? GO:0000781 ... P62805 37718728
    842626 8jlb:F (2.36) BS02 dna ? GO:0000781 ... P62805 37718728
    842627 8jlb:G (2.36) BS01 dna ? GO:0000786 ... P04908 37718728
    842628 8jlb:G (2.36) BS02 dna ? GO:0000786 ... P04908 37718728
    842629 8jlb:H (2.36) BS01 dna ? GO:0000786 ... P06899 37718728
    842630 8jlc:A (2.88) BS01 UKX ? GO:0005783 ... Q7L0J3 38637505
    842631 8jld:A (2.48) BS01 dna ? GO:0000786 ... Q71DI3 37718728
    842632 8jld:A (2.48) BS02 dna ? GO:0000786 ... Q71DI3 37718728
    842633 8jld:B (2.48) BS01 dna ? GO:0000781 ... P62805 37718728
    842634 8jld:B (2.48) BS02 dna ? GO:0000781 ... P62805 37718728
    842635 8jld:C (2.48) BS01 dna ? GO:0000786 ... P04908 37718728
    842636 8jld:C (2.48) BS02 dna ? GO:0000786 ... P04908 37718728
    842637 8jld:D (2.48) BS01 dna ? GO:0000786 ... P06899 37718728
    842638 8jld:D (2.48) BS02 dna ? GO:0000786 ... P06899 37718728
    842639 8jld:E (2.48) BS01 dna ? GO:0000786 ... Q71DI3 37718728
    842640 8jld:E (2.48) BS02 dna ? GO:0000786 ... Q71DI3 37718728
    842641 8jld:F (2.48) BS01 dna ? GO:0000781 ... P62805 37718728
    842642 8jld:F (2.48) BS02 dna ? GO:0000781 ... P62805 37718728
    842643 8jld:G (2.48) BS01 dna ? GO:0000786 ... P04908 37718728
    842644 8jld:G (2.48) BS02 dna ? GO:0000786 ... P04908 37718728
    842645 8jld:H (2.48) BS01 dna ? GO:0000786 ... P06899 37718728
    842646 8jld:H (2.48) BS02 dna ? GO:0000786 ... P06899 37718728
    842647 8jlf:B (3.01) BS01 FUC ? GO:0005576 ... Q45894 38637505
    842648 8jlh:A (2.9) BS01 FUC ? GO:0005783 ... Q7L0J3 38637505
    842649 8jlh:A (2.9) BS02 UKX ? GO:0005783 ... Q7L0J3 38637505
    842650 8jli:A (3.38) BS01 UKX ? GO:0005783 ... Q7L0J3 38637505
    842651 8jli:B (3.38) BS01 UKX ? GO:0005783 ... Q7L0J3 38637505
    842652 8jlj:R (3.1) BS01 UJF ? GO:0001594 ... P0ABE7
    Q923Y8
    37935376
    842653 8jlk:R (3.22) BS01 UJL ? GO:0001594 ... P0ABE7
    Q923Y8
    37935376
    842654 8jln:R (3.24) BS01 UJF ? GO:0001594 ... P0ABE7
    Q96RJ0
    37935376
    842655 8jlo:R (3.52) BS01 UJL ? GO:0001594 ... P0ABE7
    Q96RJ0
    37935376
    842656 8jlp:R (3.23) BS01 UJU ? GO:0001594 ... P0ABE7
    Q96RJ0
    37935376
    842657 8jlq:R (2.84) BS01 G3C ? GO:0001594 ... P0ABE7
    Q96RJ0
    37935376
    842658 8jlr:R (3.0) BS01 VRK ? GO:0001594 ... P0ABE7
    Q96RJ0
    37935376
    842659 8jly:A (1.29) BS01 peptide N/A N/A N/A 38105512
    842660 8jlz:R (3.09) BS01 UQL ? GO:0004930 ... P50406 37327704
    842661 8jm0:A (1.79) BS01 FQ3 N/A GO:0016491 ... Q7XJE8 41137404
    842662 8jm0:A (1.79) BS02 FAD N/A GO:0016491 ... Q7XJE8 41137404
    842663 8jm1:A (2.31) BS01 FQ3 N/A GO:0016491 ... Q7XJE8 41137404
    842664 8jm1:A (2.31) BS02 FAD N/A GO:0016491 ... Q7XJE8 41137404
    842665 8jm2:A (1.9) BS01 FQ3 N/A GO:0016491 ... Q7XJE8 41137404
    842666 8jm2:A (1.9) BS02 FAD N/A GO:0016491 ... Q7XJE8 41137404
    842667 8jm3:A (1.9) BS01 FQ6 N/A GO:0016491 ... Q7XJE8 41137404
    842668 8jm3:A (1.9) BS02 FAD N/A GO:0016491 ... Q7XJE8 41137404
    842669 8jm4:A (1.6) BS01 FQ9 N/A GO:0016491 ... Q7XJE8 41137404
    842670 8jm4:A (1.6) BS02 FAD N/A GO:0016491 ... Q7XJE8 41137404
    842671 8jm5:B (1.9) BS01 FAD N/A GO:0016491 ... Q7XJE8 41137404
    842672 8jm6:A (1.91) BS01 FQ3 N/A GO:0016491 ... Q7XJE8 41137404
    842673 8jm6:A (1.91) BS02 FAD N/A GO:0016491 ... Q7XJE8 41137404
    842674 8jm7:A (1.8) BS01 FQ3 N/A GO:0016491 ... Q7XJE8 41137404
    842675 8jm7:A (1.8) BS02 FAD N/A GO:0016491 ... Q7XJE8 41137404
    842676 8jm8:A (1.7) BS01 E2Y N/A GO:0016491 ... Q7XJE8 41137404
    842677 8jm8:A (1.7) BS02 FAD N/A GO:0016491 ... Q7XJE8 41137404
    842678 8jma:A (2.5) BS01 FRU ? GO:0001582 ... Q9V4K2 38305684
    842679 8jma:B (2.5) BS01 FRU ? GO:0001582 ... Q9V4K2 38305684
    842680 8jma:C (2.5) BS01 FRU ? GO:0001582 ... Q9V4K2 38305684
    842681 8jma:D (2.5) BS01 FRU ? GO:0001582 ... Q9V4K2 38305684
    842682 8jmh:A (2.5) BS01 GLC ? GO:0001582 ... P83293 38305684
    842683 8jmh:A (2.5) BS02 FRU ? GO:0001582 ... P83293 38305684
    842684 8jmh:B (2.5) BS01 GLC ? GO:0001582 ... P83293 38305684
    842685 8jmh:B (2.5) BS02 FRU ? GO:0001582 ... P83293 38305684
    842686 8jmh:C (2.5) BS01 GLC ? GO:0001582 ... P83293 38305684
    842687 8jmh:C (2.5) BS02 FRU ? GO:0001582 ... P83293 38305684
    842688 8jmh:D (2.5) BS01 GLC ? GO:0001582 ... P83293 38305684
    842689 8jmh:D (2.5) BS02 FRU ? GO:0001582 ... P83293 38305684
    842690 8jmi:A (2.6) BS01 BGC ? GO:0001582 ... P83293 38305684
    842691 8jmi:A (2.6) BS02 GLC ? GO:0001582 ... P83293 38305684
    842692 8jmi:B (2.6) BS01 BGC ? GO:0001582 ... P83293 38305684
    842693 8jmi:B (2.6) BS02 GLC ? GO:0001582 ... P83293 38305684
    842694 8jmi:C (2.6) BS01 BGC ? GO:0001582 ... P83293 38305684
    842695 8jmi:C (2.6) BS02 GLC ? GO:0001582 ... P83293 38305684
    842696 8jmi:D (2.6) BS01 BGC ? GO:0001582 ... P83293 38305684
    842697 8jmi:D (2.6) BS02 GLC ? GO:0001582 ... P83293 38305684
    842698 8jmj:A (2.57) BS01 dna ? N/A O25759 38842933
    842699 8jmj:A (2.57) BS02 dna ? N/A O25759 38842933
    842700 8jmj:A (2.57) BS03 peptide ? N/A O25759 38842933
    842701 8jmj:A (2.57) BS04 ATP ? N/A O25759 38842933
    842702 8jmj:A (2.57) BS05 ATP ? N/A O25759 38842933
    842703 8jmj:B (2.57) BS01 dna ? N/A O25759 38842933
    842704 8jmj:B (2.57) BS02 dna ? N/A O25759 38842933
    842705 8jmj:B (2.57) BS03 peptide ? N/A O25759 38842933
    842706 8jmj:B (2.57) BS04 ATP ? N/A O25759 38842933
    842707 8jmj:B (2.57) BS05 ATP ? N/A O25759 38842933
    842708 8jmj:C (2.57) BS01 dna ? N/A O25759 38842933
    842709 8jmj:C (2.57) BS02 dna ? N/A O25759 38842933
    842710 8jmj:C (2.57) BS03 peptide ? N/A O25759 38842933
    842711 8jmj:C (2.57) BS04 ATP ? N/A O25759 38842933
    842712 8jmj:C (2.57) BS05 ATP ? N/A O25759 38842933
    842713 8jmj:D (2.57) BS01 dna ? N/A O25759 38842933
    842714 8jmj:D (2.57) BS02 peptide ? N/A O25759 38842933
    842715 8jmj:D (2.57) BS03 ATP ? N/A O25759 38842933
    842716 8jmj:D (2.57) BS04 ATP ? N/A O25759 38842933
    842717 8jmj:D (2.57) BS05 MG ? N/A O25759 38842933
    842718 8jmk:A (2.7) BS01 dna ? N/A O25759 38842933
    842719 8jmk:A (2.7) BS02 dna ? N/A O25759 38842933
    842720 8jmk:A (2.7) BS03 ATP ? N/A O25759 38842933
    842721 8jmk:A (2.7) BS04 ATP ? N/A O25759 38842933
    842722 8jmk:B (2.7) BS01 dna ? N/A O25759 38842933
    842723 8jmk:B (2.7) BS02 ATP ? N/A O25759 38842933
    842724 8jmk:B (2.7) BS03 ATP ? N/A O25759 38842933
    842725 8jmk:C (2.7) BS01 dna ? N/A O25759 38842933
    842726 8jmk:C (2.7) BS02 dna ? N/A O25759 38842933
    842727 8jmk:C (2.7) BS03 ATP ? N/A O25759 38842933
    842728 8jmk:C (2.7) BS04 ATP ? N/A O25759 38842933
    842729 8jmk:D (2.7) BS01 dna ? N/A O25759 38842933
    842730 8jmk:D (2.7) BS02 ATP ? N/A O25759 38842933
    842731 8jmk:D (2.7) BS03 ATP ? N/A O25759 38842933
    842732 8jml:A (2.0) BS01 ATP ? N/A O25759 38842933
    842733 8jml:A (2.0) BS02 ATP ? N/A O25759 38842933
    842734 8jml:B (2.0) BS01 ATP ? N/A O25759 38842933
    842735 8jml:B (2.0) BS02 ATP ? N/A O25759 38842933
    842736 8jmn:A (2.26) BS01 MG 7.2.2.19 GO:0000166 ... P19156 37726448
    842737 8jmn:A (2.26) BS02 UOU 7.2.2.19 GO:0000166 ... P19156 37726448
    842738 8jmn:B (2.26) BS01 CLR ? GO:0001671 ... P18434 37726448
    842739 8jmo:A (1.95) BS01 CA 3.1.1.101
    3.1.1.74
    GO:0005576 ... G9BY57 37979420
    842740 8jmo:A (1.95) BS02 E7J 3.1.1.101
    3.1.1.74
    GO:0005576 ... G9BY57 37979420
    842741 8jmo:B (1.95) BS01 E7J 3.1.1.101
    3.1.1.74
    GO:0005576 ... G9BY57 37979420
    842742 8jmp:A (1.9) BS01 CA 3.1.1.101
    3.1.1.74
    GO:0005576 ... G9BY57 37979420
    842743 8jmp:A (1.9) BS02 EMX 3.1.1.101
    3.1.1.74
    GO:0005576 ... G9BY57 37979420
    842744 8jmr:A (2.2) BS01 UR0 ? GO:0030246 ... A9CQD3 37729620
    842745 8jmr:B (2.2) BS01 UR0 ? GO:0030246 ... A9CQD5 37729620
    842746 8jmx:A (2.9502) BS01 E47 2.7.11.1 GO:0000212 ... O14965 37594149
    842747 8jmz:A (1.988) BS01 UKI 2.7.10.1 GO:0004672 ... P11362 38172256
    842748 8jmz:B (1.988) BS01 UKI 2.7.10.1 GO:0004672 ... P11362 38172256
    842749 8jn4:H (3.5) BS01 MAN N/A N/A N/A 41102151
    842750 8jn8:A (1.902) BS01 JA6 2.7.10.2 GO:0000122 ... P12931 N/A
    842751 8jn9:A (2.724) BS01 UJ0 2.7.10.2 GO:0000122 ... P12931 N/A
    842752 8jnb:B (1.62) BS01 USX N/A GO:0007165 ... P04049
    P15056
    N/A
    842753 8jnc:A (2.0) BS01 HEM ? GO:0004497 ... A0A0B4ZV78 37917570
    842754 8jnc:A (2.0) BS02 E5I ? GO:0004497 ... A0A0B4ZV78 37917570
    842755 8jnc:B (2.0) BS01 HEM ? GO:0004497 ... A0A0B4ZV78 37917570
    842756 8jnc:B (2.0) BS02 E5I ? GO:0004497 ... A0A0B4ZV78 37917570
    842757 8jnd:A (3.66) BS01 dna ? GO:0000786 ... P68431 38509361
    842758 8jnd:A (3.66) BS02 dna ? GO:0000786 ... P68431 38509361
    842759 8jnd:B (3.66) BS01 dna ? GO:0000781 ... P62805 38509361
    842760 8jnd:B (3.66) BS02 dna ? GO:0000781 ... P62805 38509361
    842761 8jnd:C (3.66) BS01 dna ? GO:0000786 ... P04908 38509361
    842762 8jnd:C (3.66) BS02 dna ? GO:0000786 ... P04908 38509361
    842763 8jnd:D (3.66) BS01 dna ? GO:0000786 ... P06899 38509361
    842764 8jnd:D (3.66) BS02 dna ? GO:0000786 ... P06899 38509361
    842765 8jnd:E (3.66) BS01 dna ? GO:0000786 ... P68431 38509361
    842766 8jnd:E (3.66) BS02 dna ? GO:0000786 ... P68431 38509361
    842767 8jnd:F (3.66) BS01 dna ? GO:0000781 ... P62805 38509361
    842768 8jnd:F (3.66) BS02 dna ? GO:0000781 ... P62805 38509361
    842769 8jnd:G (3.66) BS01 dna ? GO:0000786 ... P04908 38509361
    842770 8jnd:G (3.66) BS02 dna ? GO:0000786 ... P04908 38509361
    842771 8jnd:H (3.66) BS01 dna ? GO:0000786 ... P06899 38509361
    842772 8jnd:H (3.66) BS02 dna ? GO:0000786 ... P06899 38509361
    842773 8jne:A (4.68) BS01 dna ? GO:0000786 ... P68431 38509361
    842774 8jne:A (4.68) BS02 dna ? GO:0000786 ... P68431 38509361
    842775 8jne:B (4.68) BS01 dna ? GO:0000781 ... P62805 38509361
    842776 8jne:B (4.68) BS02 dna ? GO:0000781 ... P62805 38509361
    842777 8jne:C (4.68) BS01 dna ? GO:0000786 ... P04908 38509361
    842778 8jne:C (4.68) BS02 dna ? GO:0000786 ... P04908 38509361
    842779 8jne:D (4.68) BS01 dna ? GO:0000786 ... P06899 38509361
    842780 8jne:D (4.68) BS02 dna ? GO:0000786 ... P06899 38509361
    842781 8jne:E (4.68) BS01 dna ? GO:0000786 ... P68431 38509361
    842782 8jne:E (4.68) BS02 dna ? GO:0000786 ... P68431 38509361
    842783 8jne:F (4.68) BS01 dna ? GO:0000781 ... P62805 38509361
    842784 8jne:F (4.68) BS02 dna ? GO:0000781 ... P62805 38509361
    842785 8jne:G (4.68) BS01 dna ? GO:0000786 ... P04908 38509361
    842786 8jne:G (4.68) BS02 dna ? GO:0000786 ... P04908 38509361
    842787 8jne:H (4.68) BS01 dna ? GO:0000786 ... P06899 38509361
    842788 8jne:H (4.68) BS02 dna ? GO:0000786 ... P06899 38509361
    842789 8jnf:A (6.91) BS01 dna ? GO:0000786 ... P68431 38509361
    842790 8jnf:A (6.91) BS02 dna ? GO:0000786 ... P68431 38509361
    842791 8jnf:B (6.91) BS01 dna ? GO:0000781 ... P62805 38509361
    842792 8jnf:B (6.91) BS02 dna ? GO:0000781 ... P62805 38509361
    842793 8jnf:E (6.91) BS01 dna ? GO:0000786 ... P68431 38509361
    842794 8jnf:E (6.91) BS02 dna ? GO:0000786 ... P68431 38509361
    842795 8jnf:F (6.91) BS01 dna ? GO:0000781 ... P62805 38509361
    842796 8jnf:F (6.91) BS02 dna ? GO:0000781 ... P62805 38509361
    842797 8jnf:G (6.91) BS01 dna ? GO:0000786 ... P04908 38509361
    842798 8jnf:G (6.91) BS02 dna ? GO:0000786 ... P04908 38509361
    842799 8jnf:H (6.91) BS01 dna ? GO:0000786 ... P06899 38509361
    842800 8jnf:H (6.91) BS02 dna ? GO:0000786 ... P06899 38509361

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).