SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    844201 8oeq:CC (3.3) BS02 rna N/A GO:0000463 ... A0A8H6F6B7 N/A
    844202 8oeq:CD (3.3) BS01 rna N/A GO:0003735 ... P47834 N/A
    844203 8oeq:CE (3.3) BS01 rna N/A GO:0003723 ... A0A1D8PF45 N/A
    844204 8oeq:CE (3.3) BS02 rna N/A GO:0003723 ... A0A1D8PF45 N/A
    844205 8oeq:CE (3.3) BS03 ZN N/A GO:0003723 ... A0A1D8PF45 N/A
    844206 8oeq:CF (3.3) BS01 rna N/A GO:0003735 ... A0A1D8PG16 N/A
    844207 8oeq:CG (3.3) BS01 rna N/A GO:0003735 ... Q96W55 N/A
    844208 8oeq:CG (3.3) BS02 rna N/A GO:0003735 ... Q96W55 N/A
    844209 8oeq:CH (3.3) BS01 rna N/A GO:0003735 ... A0A1D8PL68 N/A
    844210 8oeq:CJ (3.3) BS01 rna N/A GO:0003735 ... A0A8H6BR69 N/A
    844211 8oeq:CJ (3.3) BS02 3K5 N/A GO:0003735 ... A0A8H6BR69 N/A
    844212 8oeq:CK (3.3) BS01 rna N/A GO:0003735 ... A0A1D8PP14 N/A
    844213 8oeq:CK (3.3) BS02 ZN N/A GO:0003735 ... A0A1D8PP14 N/A
    844214 8oeq:CL (3.3) BS01 rna N/A GO:0000723 ... A0A1D8PK71 N/A
    844215 8oeq:CL (3.3) BS02 rna N/A GO:0000723 ... A0A1D8PK71 N/A
    844216 8oeq:CN (3.3) BS01 rna N/A GO:0000028 ... A0A8H6C395 N/A
    844217 8oeq:CO (3.3) BS01 rna N/A GO:0003735 ... A0A8H6C387 N/A
    844218 8oeq:CP (3.3) BS01 rna N/A GO:0000054 ... A0A8H6BZ90 N/A
    844219 8oeq:CQ (3.3) BS01 rna N/A GO:0000054 ... A0A8H6BYS1 N/A
    844220 8oeq:CR (3.3) BS01 rna N/A GO:0003723 ... A0A1D8PCI6 N/A
    844221 8oeq:CS (3.3) BS01 rna N/A GO:0000054 ... A0A8H6BS29 N/A
    844222 8oeq:CT (3.3) BS01 rna N/A GO:0003735 ... A0A8H6BZ37 N/A
    844223 8oeq:CU (3.3) BS01 rna N/A GO:0003735 ... A0A8H6C655 N/A
    844224 8oeq:CV (3.3) BS01 rna N/A GO:0003735 ... A0A8H6F0S0 N/A
    844225 8oeq:CV (3.3) BS02 rna N/A GO:0003735 ... A0A8H6F0S0 N/A
    844226 8oeq:CW (3.3) BS01 rna N/A GO:0003723 ... A0A8H6F1X2 N/A
    844227 8oeq:CW (3.3) BS02 MG N/A GO:0003723 ... A0A8H6F1X2 N/A
    844228 8oeq:CX (3.3) BS01 rna N/A GO:0003723 ... A0A8H6BWQ8 N/A
    844229 8oeq:CY (3.3) BS01 rna N/A GO:0003735 ... A0A1D8PN83 N/A
    844230 8oeq:CZ (3.3) BS01 rna N/A GO:0000028 ... A0A8H6C3A1 N/A
    844231 8oeq:D (3.3) BS01 rna N/A GO:0003735 ... A0A8H6C387 N/A
    844232 8oeq:D (3.3) BS02 PAR N/A GO:0003735 ... A0A8H6C387 N/A
    844233 8oeq:DA (3.3) BS01 rna N/A GO:0003735 ... A0A8H6F4G0 N/A
    844234 8oeq:DA (3.3) BS02 rna N/A GO:0003735 ... A0A8H6F4G0 N/A
    844235 8oeq:DB (3.3) BS01 rna N/A GO:0003735 ... A0A8H6F0V4 N/A
    844236 8oeq:DB (3.3) BS02 MG N/A GO:0003735 ... A0A8H6F0V4 N/A
    844237 8oeq:DC (3.3) BS01 rna N/A GO:0000028 ... A0A1D8PK22 N/A
    844238 8oeq:DC (3.3) BS02 MG N/A GO:0000028 ... A0A1D8PK22 N/A
    844239 8oeq:DD (3.3) BS01 rna N/A GO:0000462 ... O94017 N/A
    844240 8oeq:DE (3.3) BS01 rna N/A GO:0003735 ... A0A8H6BTR7 N/A
    844241 8oeq:DF (3.3) BS01 rna N/A GO:0003676 ... A0A8H6F3Y8 N/A
    844242 8oeq:DG (3.3) BS01 rna N/A GO:0000028 ... A0A8H6C5L4 N/A
    844243 8oeq:DH (3.3) BS01 rna N/A GO:0003723 ... A0A8H6BYJ9 N/A
    844244 8oeq:DI (3.3) BS01 rna N/A GO:0003735 ... Q9P844 N/A
    844245 8oeq:DJ (3.3) BS01 rna N/A GO:0003735 ... A0A8H6F0N4 N/A
    844246 8oeq:DK (3.3) BS01 rna N/A GO:0003735 ... A0A8H6F0V0 N/A
    844247 8oeq:DL (3.3) BS01 rna N/A GO:0003735 ... A0A8H6C3K1 N/A
    844248 8oeq:DM (3.3) BS01 rna N/A N/A A0A8H6EZQ8 N/A
    844249 8oeq:DN (3.3) BS01 rna N/A GO:0003729 ... A0A8H6BTS1 N/A
    844250 8oeq:DO (3.3) BS01 rna N/A GO:0003735 ... A0A8H6BWE6 N/A
    844251 8oeq:DP (3.3) BS01 rna N/A GO:0000028 ... A0A8H6C0A5 N/A
    844252 8oeq:DQ (3.3) BS01 rna N/A GO:0002181 ... A0A1D8PTR4 N/A
    844253 8oeq:DQ (3.3) BS02 MG N/A GO:0002181 ... A0A1D8PTR4 N/A
    844254 8oeq:DQ (3.3) BS03 ZN N/A GO:0002181 ... A0A1D8PTR4 N/A
    844255 8oeq:DR (3.3) BS01 rna N/A GO:0003735 ... A0A1D8PSK2 N/A
    844256 8oeq:DS (3.3) BS01 rna N/A GO:0003735 ... Q5A109 N/A
    844257 8oeq:DT (3.3) BS01 rna N/A GO:0001965 ... A0A8H6C3E7 N/A
    844258 8oeq:E (3.3) BS01 rna N/A GO:0000054 ... A0A8H6BZ90 N/A
    844259 8oeq:F (3.3) BS01 rna N/A GO:0000054 ... A0A8H6BYS1 N/A
    844260 8oeq:F (3.3) BS02 MG N/A GO:0000054 ... A0A8H6BYS1 N/A
    844261 8oeq:G (3.3) BS01 rna N/A GO:0003723 ... A0A1D8PCI6 N/A
    844262 8oeq:H (3.3) BS01 rna N/A GO:0000054 ... A0A8H6BS29 N/A
    844263 8oeq:H (3.3) BS02 MG N/A GO:0000054 ... A0A8H6BS29 N/A
    844264 8oeq:I (3.3) BS01 rna N/A GO:0003735 ... A0A8H6BZ37 N/A
    844265 8oeq:I (3.3) BS02 MG N/A GO:0003735 ... A0A8H6BZ37 N/A
    844266 8oeq:J (3.3) BS01 rna N/A GO:0003735 ... A0A8H6C655 N/A
    844267 8oeq:K (3.3) BS01 rna N/A GO:0003735 ... A0A8H6F0S0 N/A
    844268 8oeq:K (3.3) BS02 rna N/A GO:0003735 ... A0A8H6F0S0 N/A
    844269 8oeq:K (3.3) BS03 MG N/A GO:0003735 ... A0A8H6F0S0 N/A
    844270 8oeq:L (3.3) BS01 rna N/A GO:0003723 ... A0A8H6F1X2 N/A
    844271 8oeq:L1 (3.3) BS01 rna N/A GO:0003723 ... A0A8H6F4E7 N/A
    844272 8oeq:M (3.3) BS01 rna N/A GO:0003723 ... A0A8H6BWQ8 N/A
    844273 8oeq:N (3.3) BS01 rna N/A GO:0003735 ... A0A1D8PN83 N/A
    844274 8oeq:O (3.3) BS01 rna N/A GO:0000028 ... A0A8H6C3A1 N/A
    844275 8oeq:P (3.3) BS01 rna N/A GO:0003735 ... A0A8H6F4G0 N/A
    844276 8oeq:Q (3.3) BS01 rna N/A GO:0003735 ... A0A8H6F0V4 N/A
    844277 8oeq:Q (3.3) BS02 PAR N/A GO:0003735 ... A0A8H6F0V4 N/A
    844278 8oeq:Q (3.3) BS03 MG N/A GO:0003735 ... A0A8H6F0V4 N/A
    844279 8oeq:R (3.3) BS01 rna N/A GO:0000028 ... A0A1D8PK22 N/A
    844280 8oeq:R (3.3) BS02 rna N/A GO:0000028 ... A0A1D8PK22 N/A
    844281 8oeq:S (3.3) BS01 rna N/A GO:0000462 ... O94017 N/A
    844282 8oeq:T (3.3) BS01 rna N/A GO:0003735 ... A0A8H6BTR7 N/A
    844283 8oeq:U (3.3) BS01 rna N/A GO:0003676 ... A0A8H6F3Y8 N/A
    844284 8oeq:V (3.3) BS01 rna N/A GO:0000028 ... A0A8H6C5L4 N/A
    844285 8oeq:V (3.3) BS02 MG N/A GO:0000028 ... A0A8H6C5L4 N/A
    844286 8oeq:W (3.3) BS01 rna N/A GO:0003723 ... A0A8H6BYJ9 N/A
    844287 8oeq:X (3.3) BS01 rna N/A GO:0003735 ... Q9P844 N/A
    844288 8oeq:Y (3.3) BS01 rna N/A GO:0003735 ... A0A8H6F0N4 N/A
    844289 8oeq:Y (3.3) BS02 MG N/A GO:0003735 ... A0A8H6F0N4 N/A
    844290 8oeq:Y (3.3) BS03 MG N/A GO:0003735 ... A0A8H6F0N4 N/A
    844291 8oeq:Z (3.3) BS01 rna N/A GO:0003735 ... A0A8H6F0V0 N/A
    844292 8oeq:Z (3.3) BS02 MG N/A GO:0003735 ... A0A8H6F0V0 N/A
    844293 8oeq:a (3.3) BS01 rna N/A GO:0003735 ... A0A8H6C3K1 N/A
    844294 8oeq:b (3.3) BS01 rna N/A N/A A0A8H6EZQ8 N/A
    844295 8oeq:c (3.3) BS01 rna N/A GO:0003729 ... A0A8H6BTS1 N/A
    844296 8oeq:c (3.3) BS02 ZN N/A GO:0003729 ... A0A8H6BTS1 N/A
    844297 8oeq:d (3.3) BS01 rna N/A GO:0003735 ... A0A8H6BWE6 N/A
    844298 8oeq:e (3.3) BS01 rna N/A GO:0000028 ... A0A8H6C0A5 N/A
    844299 8oeq:f (3.3) BS01 rna N/A GO:0002181 ... A0A1D8PTR4 N/A
    844300 8oeq:f (3.3) BS02 ZN N/A GO:0002181 ... A0A1D8PTR4 N/A
    844301 8oeq:g (3.3) BS01 rna N/A GO:0003735 ... A0A1D8PSK2 N/A
    844302 8oeq:h (3.3) BS01 rna N/A GO:0003735 ... Q5A109 N/A
    844303 8oeq:i (3.3) BS01 rna N/A GO:0000723 ... A0A1D8PK71 N/A
    844304 8oeq:i (3.3) BS02 rna N/A GO:0000723 ... A0A1D8PK71 N/A
    844305 8oeq:j (3.3) BS01 rna N/A GO:0002181 ... A0A8H6F1X9 N/A
    844306 8oeq:j (3.3) BS02 rna N/A GO:0002181 ... A0A8H6F1X9 N/A
    844307 8oeq:j (3.3) BS03 MG N/A GO:0002181 ... A0A8H6F1X9 N/A
    844308 8oeq:j (3.3) BS04 MG N/A GO:0002181 ... A0A8H6F1X9 N/A
    844309 8oeq:k (3.3) BS01 rna N/A GO:0000027 ... Q59LS1 N/A
    844310 8oeq:k (3.3) BS02 MG N/A GO:0000027 ... Q59LS1 N/A
    844311 8oeq:k (3.3) BS03 MG N/A GO:0000027 ... Q59LS1 N/A
    844312 8oeq:k (3.3) BS04 MG N/A GO:0000027 ... Q59LS1 N/A
    844313 8oeq:l (3.3) BS01 rna N/A GO:0003735 ... A0A8H6F4H4 N/A
    844314 8oeq:l (3.3) BS02 rna N/A GO:0003735 ... A0A8H6F4H4 N/A
    844315 8oeq:l1 (3.3) BS01 rna N/A GO:0003723 ... A0A8H6F4E7 N/A
    844316 8oeq:m (3.3) BS01 rna N/A GO:0000027 ... G1UAA6 N/A
    844317 8oeq:m (3.3) BS02 rna N/A GO:0000027 ... G1UAA6 N/A
    844318 8oeq:n (3.3) BS01 rna N/A GO:0000027 ... Q9P834 N/A
    844319 8oeq:o (3.3) BS01 rna N/A GO:0000463 ... A0A8H6BVN2 N/A
    844320 8oeq:o (3.3) BS02 rna N/A GO:0000463 ... A0A8H6BVN2 N/A
    844321 8oeq:p (3.3) BS01 rna N/A GO:0003723 ... A0A8H6C337 N/A
    844322 8oeq:p (3.3) BS02 rna N/A GO:0003723 ... A0A8H6C337 N/A
    844323 8oeq:q (3.3) BS01 rna N/A GO:0002181 ... A0A8H6C3N3 N/A
    844324 8oeq:r (3.3) BS01 rna N/A GO:0003735 ... Q5AIB8 N/A
    844325 8oeq:r (3.3) BS02 rna N/A GO:0003735 ... Q5AIB8 N/A
    844326 8oeq:r (3.3) BS03 MG N/A GO:0003735 ... Q5AIB8 N/A
    844327 8oeq:r (3.3) BS04 MG N/A GO:0003735 ... Q5AIB8 N/A
    844328 8oeq:s (3.3) BS01 rna N/A GO:0003735 ... A0A8H6F1S5 N/A
    844329 8oeq:s (3.3) BS02 rna N/A GO:0003735 ... A0A8H6F1S5 N/A
    844330 8oeq:t (3.3) BS01 rna N/A GO:0003723 ... A0A8H6F5V7 N/A
    844331 8oeq:t (3.3) BS02 rna N/A GO:0003723 ... A0A8H6F5V7 N/A
    844332 8oeq:u (3.3) BS01 rna N/A GO:0003723 ... A0A8H6F332 N/A
    844333 8oeq:u (3.3) BS02 MG N/A GO:0003723 ... A0A8H6F332 N/A
    844334 8oeq:v (3.3) BS01 rna N/A GO:0002181 ... Q5A6R1 N/A
    844335 8oeq:v (3.3) BS02 rna N/A GO:0002181 ... Q5A6R1 N/A
    844336 8oeq:v (3.3) BS03 MG N/A GO:0002181 ... Q5A6R1 N/A
    844337 8oeq:v (3.3) BS04 MG N/A GO:0002181 ... Q5A6R1 N/A
    844338 8oeq:v (3.3) BS05 MG N/A GO:0002181 ... Q5A6R1 N/A
    844339 8oeq:w (3.3) BS01 rna N/A GO:0003729 ... A0A8H6BZ56 N/A
    844340 8oeq:w (3.3) BS02 MG N/A GO:0003729 ... A0A8H6BZ56 N/A
    844341 8oeq:x (3.3) BS01 rna N/A GO:0002181 ... A0A8H6BUG0 N/A
    844342 8oeq:x (3.3) BS02 rna N/A GO:0002181 ... A0A8H6BUG0 N/A
    844343 8oeq:x (3.3) BS03 MG N/A GO:0002181 ... A0A8H6BUG0 N/A
    844344 8oeq:x (3.3) BS04 MG N/A GO:0002181 ... A0A8H6BUG0 N/A
    844345 8oeq:y (3.3) BS01 rna N/A GO:0003723 ... A0A8H6C4Y1 N/A
    844346 8oeq:z (3.3) BS01 rna N/A GO:0003723 ... A0A1D8PK40 N/A
    844347 8oeq:z (3.3) BS02 rna N/A GO:0003723 ... A0A1D8PK40 N/A
    844348 8oeq:z (3.3) BS03 MG N/A GO:0003723 ... A0A1D8PK40 N/A
    844349 8oer:A (3.0) BS01 CA ? N/A Q9HC84 N/A
    844350 8oer:A (3.0) BS02 CA ? N/A Q9HC84 N/A
    844351 8oer:B (3.0) BS01 CA ? N/A Q9HC84 N/A
    844352 8oer:B (3.0) BS02 CA ? N/A Q9HC84 N/A
    844353 8oer:C (3.0) BS01 CA ? N/A Q9HC84 N/A
    844354 8oer:D (3.0) BS01 CA ? N/A Q9HC84 N/A
    844355 8oer:I (3.0) BS01 CA ? N/A Q9HC84 N/A
    844356 8oer:J (3.0) BS01 CA ? N/A Q9HC84 N/A
    844357 8oes:A (3.0) BS01 CA ? N/A Q9HC84 N/A
    844358 8oes:A (3.0) BS02 CA ? N/A Q9HC84 N/A
    844359 8oes:A (3.0) BS03 CA ? N/A Q9HC84 N/A
    844360 8oes:B (3.0) BS01 CA ? N/A Q9HC84 N/A
    844361 8oes:B (3.0) BS02 CA ? N/A Q9HC84 N/A
    844362 8oes:B (3.0) BS03 CA ? N/A Q9HC84 N/A
    844363 8oes:C (3.0) BS01 CA ? N/A Q9HC84 N/A
    844364 8oes:C (3.0) BS02 CA ? N/A Q9HC84 N/A
    844365 8oes:C (3.0) BS03 CA ? N/A Q9HC84 N/A
    844366 8oes:D (3.0) BS01 CA ? N/A Q9HC84 N/A
    844367 8oes:D (3.0) BS02 CA ? N/A Q9HC84 N/A
    844368 8oes:D (3.0) BS03 CA ? N/A Q9HC84 N/A
    844369 8oes:E (3.0) BS01 CA ? N/A Q9HC84 N/A
    844370 8oes:E (3.0) BS02 CA ? N/A Q9HC84 N/A
    844371 8oes:F (3.0) BS01 CA ? N/A Q9HC84 N/A
    844372 8oes:F (3.0) BS02 CA ? N/A Q9HC84 N/A
    844373 8oes:G (3.0) BS01 CA ? N/A Q9HC84 N/A
    844374 8oes:H (3.0) BS01 CA ? N/A Q9HC84 N/A
    844375 8oes:I (3.0) BS01 CA ? N/A Q9HC84 N/A
    844376 8oes:J (3.0) BS01 CA ? N/A Q9HC84 N/A
    844377 8oes:K (3.0) BS01 CA ? N/A Q9HC84 N/A
    844378 8oes:L (3.0) BS01 CA ? N/A Q9HC84 N/A
    844379 8oes:M (3.0) BS01 CA ? N/A Q9HC84 N/A
    844380 8oes:N (3.0) BS01 CA ? N/A Q9HC84 N/A
    844381 8oet:A (2.11) BS01 dna 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    844382 8oet:A (2.11) BS02 dna 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    844383 8oet:A (2.11) BS03 FDA 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    844384 8oet:B (2.11) BS01 dna 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    844385 8oet:B (2.11) BS02 dna 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    844386 8oet:B (2.11) BS03 FDA 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    844387 8oeu:A (3.04) BS01 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 37932450
    844388 8oeu:A (3.04) BS02 rna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 37932450
    844389 8oeu:A (3.04) BS03 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 37932450
    844390 8oeu:A (3.04) BS04 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 37932450
    844391 8oeu:A (3.04) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 37932450
    844392 8oeu:A (3.04) BS06 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 37932450
    844393 8oeu:B (3.04) BS01 rna 2.7.7.6 GO:0000428 ... I3LGP4 37932450
    844394 8oeu:B (3.04) BS02 dna 2.7.7.6 GO:0000428 ... I3LGP4 37932450
    844395 8oeu:B (3.04) BS03 ZN 2.7.7.6 GO:0000428 ... I3LGP4 37932450
    844396 8oeu:C (3.04) BS01 ZN ? GO:0000428 ... I3LCH3 37932450
    844397 8oeu:E (3.04) BS01 dna ? GO:0001054 ... I3LSI7 37932450
    844398 8oeu:I (3.04) BS01 ZN ? GO:0000428 ... P60899 37932450
    844399 8oeu:I (3.04) BS02 ZN ? GO:0000428 ... P60899 37932450
    844400 8oeu:J (3.04) BS01 ZN ? GO:0000428 ... A0A8W4F9W9 37932450
    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).