SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    845601 8k1s:E (2.83) BS01 ADP ? GO:0005267 ... O32080 38719864
    845602 8k1s:F (2.83) BS01 ADP ? GO:0005267 ... O32080 38719864
    845603 8k1s:G (2.83) BS01 ADP ? GO:0005267 ... O32080 38719864
    845604 8k1s:H (2.83) BS01 ADP ? GO:0005267 ... O32080 38719864
    845605 8k1t:A (2.48) BS01 ATP ? GO:0005267 ... O32080 38719864
    845606 8k1t:B (2.48) BS01 ATP ? GO:0005267 ... O32080 38719864
    845607 8k1t:C (2.48) BS01 ATP ? GO:0005267 ... O32080 38719864
    845608 8k1t:D (2.48) BS01 ATP ? GO:0005267 ... O32080 38719864
    845609 8k1t:E (2.48) BS01 ATP ? GO:0005267 ... O32080 38719864
    845610 8k1t:F (2.48) BS01 ATP ? GO:0005267 ... O32080 38719864
    845611 8k1t:G (2.48) BS01 ATP ? GO:0005267 ... O32080 38719864
    845612 8k1t:H (2.48) BS01 ATP ? GO:0005267 ... O32080 38719864
    845613 8k1u:A (2.82) BS01 ATP ? GO:0005267 ... O32080 38719864
    845614 8k1u:B (2.82) BS01 ATP ? GO:0005267 ... O32080 38719864
    845615 8k1u:C (2.82) BS01 ATP ? GO:0005267 ... O32080 38719864
    845616 8k1u:D (2.82) BS01 ATP ? GO:0005267 ... O32080 38719864
    845617 8k1u:E (2.82) BS01 ATP ? GO:0005267 ... O32080 38719864
    845618 8k1u:F (2.82) BS01 ATP ? GO:0005267 ... O32080 38719864
    845619 8k1u:G (2.82) BS01 ATP ? GO:0005267 ... O32080 38719864
    845620 8k1u:H (2.82) BS01 ATP ? GO:0005267 ... O32080 38719864
    845621 8k1v:A (3.48) BS01 Y01 ? GO:0005267 ... Q9NPC2 38630723
    845622 8k1v:A (3.48) BS02 Y01 ? GO:0005267 ... Q9NPC2 38630723
    845623 8k1v:A (3.48) BS03 K ? GO:0005267 ... Q9NPC2 38630723
    845624 8k1v:A (3.48) BS04 K ? GO:0005267 ... Q9NPC2 38630723
    845625 8k1v:A (3.48) BS05 K ? GO:0005267 ... Q9NPC2 38630723
    845626 8k1v:A (3.48) BS06 K ? GO:0005267 ... Q9NPC2 38630723
    845627 8k1v:B (3.48) BS01 K ? GO:0005267 ... Q9NPC2 38630723
    845628 8k1v:B (3.48) BS02 K ? GO:0005267 ... Q9NPC2 38630723
    845629 8k1v:B (3.48) BS03 K ? GO:0005267 ... Q9NPC2 38630723
    845630 8k1v:B (3.48) BS04 K ? GO:0005267 ... Q9NPC2 38630723
    845631 8k1v:B (3.48) BS05 Y01 ? GO:0005267 ... Q9NPC2 38630723
    845632 8k1x:A (2.27) BS01 HEM N/A GO:0004497 ... W5R4Y8 N/A
    845633 8k1x:A (2.27) BS02 VI4 N/A GO:0004497 ... W5R4Y8 N/A
    845634 8k1x:A (2.27) BS03 VI4 N/A GO:0004497 ... W5R4Y8 N/A
    845635 8k1x:B (2.27) BS01 HEM N/A GO:0004497 ... W5R4Y8 N/A
    845636 8k1x:B (2.27) BS02 VI4 N/A GO:0004497 ... W5R4Y8 N/A
    845637 8k1x:B (2.27) BS03 VI4 N/A GO:0004497 ... W5R4Y8 N/A
    845638 8k1x:B (2.27) BS04 VI4 N/A GO:0004497 ... W5R4Y8 N/A
    845639 8k1x:C (2.27) BS01 HEM N/A GO:0004497 ... W5R4Y8 N/A
    845640 8k1x:C (2.27) BS02 VI4 N/A GO:0004497 ... W5R4Y8 N/A
    845641 8k1y:A (2.15) BS01 VAL N/A GO:0003677 ... P02768 38263542
    845642 8k1z:A (3.41) BS01 Y01 ? GO:0005267 ... Q9NPC2 38630723
    845643 8k1z:A (3.41) BS02 Y01 ? GO:0005267 ... Q9NPC2 38630723
    845644 8k1z:A (3.41) BS03 K ? GO:0005267 ... Q9NPC2 38630723
    845645 8k1z:A (3.41) BS04 K ? GO:0005267 ... Q9NPC2 38630723
    845646 8k1z:A (3.41) BS05 K ? GO:0005267 ... Q9NPC2 38630723
    845647 8k1z:A (3.41) BS06 K ? GO:0005267 ... Q9NPC2 38630723
    845648 8k1z:B (3.41) BS01 K ? GO:0005267 ... Q9NPC2 38630723
    845649 8k1z:B (3.41) BS02 K ? GO:0005267 ... Q9NPC2 38630723
    845650 8k1z:B (3.41) BS03 K ? GO:0005267 ... Q9NPC2 38630723
    845651 8k1z:B (3.41) BS04 Y01 ? GO:0005267 ... Q9NPC2 38630723
    845652 8k1z:B (3.41) BS05 Y01 ? GO:0005267 ... Q9NPC2 38630723
    845653 8k1z:B (3.41) BS06 K ? GO:0005267 ... Q9NPC2 38630723
    845654 8k20:A (3.7) BS01 FE 2.3.1.234 GO:0000408 ... O49653 38477398
    845655 8k21:D (3.8) BS01 dna N/A GO:0003676 ... A0ACD6B8J8 N/A
    845656 8k21:E (3.8) BS01 dna N/A GO:0003676 ... A0ACD6B8J8 N/A
    845657 8k21:E (3.8) BS02 dna N/A GO:0003676 ... A0ACD6B8J8 N/A
    845658 8k21:a (3.8) BS01 dna N/A N/A A0ACD6B8J7 N/A
    845659 8k21:d (3.8) BS01 dna N/A GO:0003676 ... A0ACD6B8J8 N/A
    845660 8k21:e (3.8) BS01 dna N/A GO:0003676 ... A0ACD6B8J8 N/A
    845661 8k22:A (2.92) BS01 dna N/A GO:0046872 ... A0ACD6B8J7 N/A
    845662 8k22:A (2.92) BS02 dna N/A GO:0046872 ... A0ACD6B8J7 N/A
    845663 8k22:A (2.92) BS03 MN N/A GO:0046872 ... A0ACD6B8J7 N/A
    845664 8k22:A (2.92) BS04 MN N/A GO:0046872 ... A0ACD6B8J7 N/A
    845665 8k22:B (2.92) BS01 rna N/A N/A A0ACD6B8J6 N/A
    845666 8k22:B (2.92) BS02 dna N/A N/A A0ACD6B8J6 N/A
    845667 8k22:B (2.92) BS03 dna N/A N/A A0ACD6B8J6 N/A
    845668 8k22:C (2.92) BS01 rna N/A N/A A0ACD6B8J5 N/A
    845669 8k22:C (2.92) BS02 dna N/A N/A A0ACD6B8J5 N/A
    845670 8k22:C (2.92) BS03 dna N/A N/A A0ACD6B8J5 N/A
    845671 8k22:D (2.92) BS01 dna N/A GO:0003676 ... A0ACD6B8J8 N/A
    845672 8k22:E (2.92) BS01 dna N/A GO:0003676 ... A0ACD6B8J8 N/A
    845673 8k22:E (2.92) BS02 dna N/A GO:0003676 ... A0ACD6B8J8 N/A
    845674 8k22:G (2.92) BS01 rna N/A N/A A0ACD6B8J4 N/A
    845675 8k22:G (2.92) BS02 dna N/A N/A A0ACD6B8J4 N/A
    845676 8k22:H (2.92) BS01 rna N/A GO:0004519 ... A0ACD6B8J3 N/A
    845677 8k22:I (2.92) BS01 rna N/A N/A A0ACD6B8J4 N/A
    845678 8k22:I (2.92) BS02 dna N/A N/A A0ACD6B8J4 N/A
    845679 8k22:J (2.92) BS01 rna N/A N/A A0ACD6B8J4 N/A
    845680 8k22:J (2.92) BS02 dna N/A N/A A0ACD6B8J4 N/A
    845681 8k22:K (2.92) BS01 rna N/A N/A A0ACD6B8J4 N/A
    845682 8k22:K (2.92) BS02 dna N/A N/A A0ACD6B8J4 N/A
    845683 8k22:K (2.92) BS03 dna N/A N/A A0ACD6B8J4 N/A
    845684 8k22:L (2.92) BS01 rna N/A N/A A0ACD6B8J4 N/A
    845685 8k22:L (2.92) BS02 dna N/A N/A A0ACD6B8J4 N/A
    845686 8k22:M (2.92) BS01 rna N/A N/A A0ACD6B8J4 N/A
    845687 8k22:M (2.92) BS02 dna N/A N/A A0ACD6B8J4 N/A
    845688 8k22:a (2.92) BS01 dna N/A GO:0046872 ... A0ACD6B8J7 N/A
    845689 8k22:d (2.92) BS01 dna N/A GO:0003676 ... A0ACD6B8J8 N/A
    845690 8k22:e (2.92) BS01 dna N/A GO:0003676 ... A0ACD6B8J8 N/A
    845691 8k23:A (3.75) BS01 dna N/A GO:0046872 ... A0ACD6B8J7 N/A
    845692 8k23:A (3.75) BS02 dna N/A GO:0046872 ... A0ACD6B8J7 N/A
    845693 8k23:A (3.75) BS03 MN N/A GO:0046872 ... A0ACD6B8J7 N/A
    845694 8k23:A (3.75) BS04 MN N/A GO:0046872 ... A0ACD6B8J7 N/A
    845695 8k23:B (3.75) BS01 rna N/A N/A A0ACD6B8J6 N/A
    845696 8k23:B (3.75) BS02 dna N/A N/A A0ACD6B8J6 N/A
    845697 8k23:B (3.75) BS03 dna N/A N/A A0ACD6B8J6 N/A
    845698 8k23:C (3.75) BS01 rna N/A N/A A0ACD6B8J5 N/A
    845699 8k23:C (3.75) BS02 dna N/A N/A A0ACD6B8J5 N/A
    845700 8k23:C (3.75) BS03 dna N/A N/A A0ACD6B8J5 N/A
    845701 8k23:D (3.75) BS01 dna N/A GO:0003676 ... A0ACD6B8J8 N/A
    845702 8k23:E (3.75) BS01 dna N/A GO:0003676 ... A0ACD6B8J8 N/A
    845703 8k23:E (3.75) BS02 dna N/A GO:0003676 ... A0ACD6B8J8 N/A
    845704 8k23:G (3.75) BS01 rna N/A N/A A0ACD6B8J4 N/A
    845705 8k23:G (3.75) BS02 dna N/A N/A A0ACD6B8J4 N/A
    845706 8k23:H (3.75) BS01 rna N/A GO:0004519 ... A0ACD6B8J3 N/A
    845707 8k23:I (3.75) BS01 rna N/A N/A A0ACD6B8J4 N/A
    845708 8k23:I (3.75) BS02 dna N/A N/A A0ACD6B8J4 N/A
    845709 8k23:J (3.75) BS01 rna N/A N/A A0ACD6B8J4 N/A
    845710 8k23:J (3.75) BS02 dna N/A N/A A0ACD6B8J4 N/A
    845711 8k23:K (3.75) BS01 rna N/A N/A A0ACD6B8J4 N/A
    845712 8k23:K (3.75) BS02 dna N/A N/A A0ACD6B8J4 N/A
    845713 8k23:K (3.75) BS03 dna N/A N/A A0ACD6B8J4 N/A
    845714 8k23:L (3.75) BS01 rna N/A N/A A0ACD6B8J4 N/A
    845715 8k23:L (3.75) BS02 dna N/A N/A A0ACD6B8J4 N/A
    845716 8k23:M (3.75) BS01 rna N/A N/A A0ACD6B8J4 N/A
    845717 8k23:M (3.75) BS02 dna N/A N/A A0ACD6B8J4 N/A
    845718 8k23:a (3.75) BS01 dna N/A GO:0046872 ... A0ACD6B8J7 N/A
    845719 8k23:a (3.75) BS02 dna N/A GO:0046872 ... A0ACD6B8J7 N/A
    845720 8k23:a (3.75) BS03 MN N/A GO:0046872 ... A0ACD6B8J7 N/A
    845721 8k23:a (3.75) BS04 MN N/A GO:0046872 ... A0ACD6B8J7 N/A
    845722 8k23:b (3.75) BS01 rna N/A N/A A0ACD6B8J6 N/A
    845723 8k23:b (3.75) BS02 dna N/A N/A A0ACD6B8J6 N/A
    845724 8k23:b (3.75) BS03 dna N/A N/A A0ACD6B8J6 N/A
    845725 8k23:c (3.75) BS01 rna N/A N/A A0ACD6B8J5 N/A
    845726 8k23:c (3.75) BS02 dna N/A N/A A0ACD6B8J5 N/A
    845727 8k23:c (3.75) BS03 dna N/A N/A A0ACD6B8J5 N/A
    845728 8k23:d (3.75) BS01 dna N/A GO:0003676 ... A0ACD6B8J8 N/A
    845729 8k23:e (3.75) BS01 dna N/A GO:0003676 ... A0ACD6B8J8 N/A
    845730 8k23:g (3.75) BS01 rna N/A N/A A0ACD6B8J4 N/A
    845731 8k23:g (3.75) BS02 dna N/A N/A A0ACD6B8J4 N/A
    845732 8k23:h (3.75) BS01 rna N/A GO:0004519 ... A0ACD6B8J3 N/A
    845733 8k23:i (3.75) BS01 rna N/A N/A A0ACD6B8J4 N/A
    845734 8k23:i (3.75) BS02 dna N/A N/A A0ACD6B8J4 N/A
    845735 8k23:j (3.75) BS01 rna N/A N/A A0ACD6B8J4 N/A
    845736 8k23:j (3.75) BS02 dna N/A N/A A0ACD6B8J4 N/A
    845737 8k23:k (3.75) BS01 rna N/A N/A A0ACD6B8J4 N/A
    845738 8k23:k (3.75) BS02 dna N/A N/A A0ACD6B8J4 N/A
    845739 8k23:k (3.75) BS03 dna N/A N/A A0ACD6B8J4 N/A
    845740 8k23:l (3.75) BS01 rna N/A N/A A0ACD6B8J4 N/A
    845741 8k23:l (3.75) BS02 dna N/A N/A A0ACD6B8J4 N/A
    845742 8k23:m (3.75) BS01 rna N/A N/A A0ACD6B8J4 N/A
    845743 8k23:m (3.75) BS02 dna N/A N/A A0ACD6B8J4 N/A
    845744 8k24:A (3.72) BS01 dna N/A GO:0046872 ... A0ACD6B8J7 N/A
    845745 8k24:A (3.72) BS02 dna N/A GO:0046872 ... A0ACD6B8J7 N/A
    845746 8k24:A (3.72) BS03 MN N/A GO:0046872 ... A0ACD6B8J7 N/A
    845747 8k24:A (3.72) BS04 MN N/A GO:0046872 ... A0ACD6B8J7 N/A
    845748 8k24:B (3.72) BS01 rna N/A N/A A0ACD6B8J6 N/A
    845749 8k24:B (3.72) BS02 dna N/A N/A A0ACD6B8J6 N/A
    845750 8k24:B (3.72) BS03 dna N/A N/A A0ACD6B8J6 N/A
    845751 8k24:C (3.72) BS01 rna N/A N/A A0ACD6B8J5 N/A
    845752 8k24:C (3.72) BS02 dna N/A N/A A0ACD6B8J5 N/A
    845753 8k24:C (3.72) BS03 dna N/A N/A A0ACD6B8J5 N/A
    845754 8k24:D (3.72) BS01 dna N/A GO:0003676 ... A0ACD6B8J8 N/A
    845755 8k24:E (3.72) BS01 dna N/A GO:0003676 ... A0ACD6B8J8 N/A
    845756 8k24:E (3.72) BS02 dna N/A GO:0003676 ... A0ACD6B8J8 N/A
    845757 8k24:G (3.72) BS01 rna N/A N/A A0ACD6B8J4 N/A
    845758 8k24:G (3.72) BS02 dna N/A N/A A0ACD6B8J4 N/A
    845759 8k24:H (3.72) BS01 rna N/A GO:0004519 ... A0ACD6B8J3 N/A
    845760 8k24:I (3.72) BS01 rna N/A N/A A0ACD6B8J4 N/A
    845761 8k24:I (3.72) BS02 dna N/A N/A A0ACD6B8J4 N/A
    845762 8k24:J (3.72) BS01 rna N/A N/A A0ACD6B8J4 N/A
    845763 8k24:J (3.72) BS02 dna N/A N/A A0ACD6B8J4 N/A
    845764 8k24:K (3.72) BS01 rna N/A N/A A0ACD6B8J4 N/A
    845765 8k24:K (3.72) BS02 dna N/A N/A A0ACD6B8J4 N/A
    845766 8k24:K (3.72) BS03 dna N/A N/A A0ACD6B8J4 N/A
    845767 8k24:L (3.72) BS01 rna N/A N/A A0ACD6B8J4 N/A
    845768 8k24:L (3.72) BS02 dna N/A N/A A0ACD6B8J4 N/A
    845769 8k24:M (3.72) BS01 rna N/A N/A A0ACD6B8J4 N/A
    845770 8k24:M (3.72) BS02 dna N/A N/A A0ACD6B8J4 N/A
    845771 8k24:a (3.72) BS01 dna N/A GO:0046872 ... A0ACD6B8J7 N/A
    845772 8k24:a (3.72) BS02 dna N/A GO:0046872 ... A0ACD6B8J7 N/A
    845773 8k24:a (3.72) BS03 dna N/A GO:0046872 ... A0ACD6B8J7 N/A
    845774 8k24:a (3.72) BS04 MN N/A GO:0046872 ... A0ACD6B8J7 N/A
    845775 8k24:a (3.72) BS05 MN N/A GO:0046872 ... A0ACD6B8J7 N/A
    845776 8k24:b (3.72) BS01 rna N/A N/A A0ACD6B8J6 N/A
    845777 8k24:b (3.72) BS02 dna N/A N/A A0ACD6B8J6 N/A
    845778 8k24:b (3.72) BS03 dna N/A N/A A0ACD6B8J6 N/A
    845779 8k24:c (3.72) BS01 rna N/A N/A A0ACD6B8J5 N/A
    845780 8k24:c (3.72) BS02 dna N/A N/A A0ACD6B8J5 N/A
    845781 8k24:c (3.72) BS03 dna N/A N/A A0ACD6B8J5 N/A
    845782 8k24:d (3.72) BS01 dna N/A GO:0003676 ... A0ACD6B8J8 N/A
    845783 8k24:e (3.72) BS01 dna N/A GO:0003676 ... A0ACD6B8J8 N/A
    845784 8k24:g (3.72) BS01 rna N/A N/A A0ACD6B8J4 N/A
    845785 8k24:g (3.72) BS02 dna N/A N/A A0ACD6B8J4 N/A
    845786 8k24:h (3.72) BS01 rna N/A GO:0004519 ... A0ACD6B8J3 N/A
    845787 8k24:i (3.72) BS01 rna N/A N/A A0ACD6B8J4 N/A
    845788 8k24:i (3.72) BS02 dna N/A N/A A0ACD6B8J4 N/A
    845789 8k24:j (3.72) BS01 rna N/A N/A A0ACD6B8J4 N/A
    845790 8k24:j (3.72) BS02 dna N/A N/A A0ACD6B8J4 N/A
    845791 8k24:k (3.72) BS01 rna N/A N/A A0ACD6B8J4 N/A
    845792 8k24:k (3.72) BS02 dna N/A N/A A0ACD6B8J4 N/A
    845793 8k24:k (3.72) BS03 dna N/A N/A A0ACD6B8J4 N/A
    845794 8k24:l (3.72) BS01 rna N/A N/A A0ACD6B8J4 N/A
    845795 8k24:l (3.72) BS02 dna N/A N/A A0ACD6B8J4 N/A
    845796 8k24:m (3.72) BS01 rna N/A N/A A0ACD6B8J4 N/A
    845797 8k24:m (3.72) BS02 dna N/A N/A A0ACD6B8J4 N/A
    845798 8k25:A (3.4) BS01 dna N/A N/A A0ACD6B8J7 N/A
    845799 8k25:A (3.4) BS02 dna N/A N/A A0ACD6B8J7 N/A
    845800 8k25:a (3.4) BS01 dna N/A N/A A0ACD6B8J7 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).