SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    845801 8k25:d (3.4) BS01 dna N/A GO:0003676 ... A0ACD6B8J8 N/A
    845802 8k27:A (3.6) BS01 rna N/A N/A A0ACD6B8J6 N/A
    845803 8k27:A (3.6) BS02 dna N/A N/A A0ACD6B8J6 N/A
    845804 8k27:A (3.6) BS03 dna N/A N/A A0ACD6B8J6 N/A
    845805 8k27:B (3.6) BS01 rna N/A N/A A0ACD6B8J5 N/A
    845806 8k27:B (3.6) BS02 dna N/A N/A A0ACD6B8J5 N/A
    845807 8k27:B (3.6) BS03 dna N/A N/A A0ACD6B8J5 N/A
    845808 8k27:C (3.6) BS01 rna N/A N/A A0ACD6B8J4 N/A
    845809 8k27:C (3.6) BS02 dna N/A N/A A0ACD6B8J4 N/A
    845810 8k27:D (3.6) BS01 rna N/A N/A A0ACD6B8J4 N/A
    845811 8k27:D (3.6) BS02 dna N/A N/A A0ACD6B8J4 N/A
    845812 8k27:E (3.6) BS01 rna N/A N/A A0ACD6B8J4 N/A
    845813 8k27:E (3.6) BS02 dna N/A N/A A0ACD6B8J4 N/A
    845814 8k27:F (3.6) BS01 rna N/A N/A A0ACD6B8J4 N/A
    845815 8k27:F (3.6) BS02 dna N/A N/A A0ACD6B8J4 N/A
    845816 8k27:G (3.6) BS01 rna N/A N/A A0ACD6B8J4 N/A
    845817 8k27:G (3.6) BS02 dna N/A N/A A0ACD6B8J4 N/A
    845818 8k27:H (3.6) BS01 rna N/A N/A A0ACD6B8J4 N/A
    845819 8k27:H (3.6) BS02 dna N/A N/A A0ACD6B8J4 N/A
    845820 8k27:I (3.6) BS01 rna N/A GO:0004519 ... A0ACD6B8J3 N/A
    845821 8k28:A (3.54) BS01 dna N/A N/A A0ACD6B8J6 38977786
    845822 8k28:A (3.54) BS02 dna N/A N/A A0ACD6B8J6 38977786
    845823 8k28:A (3.54) BS03 rna N/A N/A A0ACD6B8J6 38977786
    845824 8k28:B (3.54) BS01 dna N/A N/A A0ACD6B8J5 38977786
    845825 8k28:B (3.54) BS02 dna N/A N/A A0ACD6B8J5 38977786
    845826 8k28:B (3.54) BS03 rna N/A N/A A0ACD6B8J5 38977786
    845827 8k28:C (3.54) BS01 dna N/A N/A A0ACD6B8J4 38977786
    845828 8k28:C (3.54) BS02 rna N/A N/A A0ACD6B8J4 38977786
    845829 8k28:D (3.54) BS01 dna N/A N/A A0ACD6B8J4 38977786
    845830 8k28:D (3.54) BS02 rna N/A N/A A0ACD6B8J4 38977786
    845831 8k28:E (3.54) BS01 dna N/A N/A A0ACD6B8J4 38977786
    845832 8k28:E (3.54) BS02 rna N/A N/A A0ACD6B8J4 38977786
    845833 8k28:F (3.54) BS01 rna N/A N/A A0ACD6B8J4 38977786
    845834 8k28:G (3.54) BS01 rna N/A N/A A0ACD6B8J4 38977786
    845835 8k28:H (3.54) BS01 rna N/A N/A A0ACD6B8J4 38977786
    845836 8k28:I (3.54) BS01 rna N/A GO:0004519 ... A0ACD6B8J3 38977786
    845837 8k29:A (3.18) BS01 rna N/A N/A A0ACD6B8J6 N/A
    845838 8k29:A (3.18) BS02 dna N/A N/A A0ACD6B8J6 N/A
    845839 8k29:A (3.18) BS03 dna N/A N/A A0ACD6B8J6 N/A
    845840 8k29:B (3.18) BS01 rna N/A N/A A0ACD6B8J5 N/A
    845841 8k29:B (3.18) BS02 dna N/A N/A A0ACD6B8J5 N/A
    845842 8k29:B (3.18) BS03 dna N/A N/A A0ACD6B8J5 N/A
    845843 8k29:C (3.18) BS01 rna N/A N/A A0ACD6B8J4 N/A
    845844 8k29:C (3.18) BS02 dna N/A N/A A0ACD6B8J4 N/A
    845845 8k29:D (3.18) BS01 rna N/A N/A A0ACD6B8J4 N/A
    845846 8k29:D (3.18) BS02 dna N/A N/A A0ACD6B8J4 N/A
    845847 8k29:E (3.18) BS01 rna N/A N/A A0ACD6B8J4 N/A
    845848 8k29:E (3.18) BS02 dna N/A N/A A0ACD6B8J4 N/A
    845849 8k29:F (3.18) BS01 rna N/A N/A A0ACD6B8J4 N/A
    845850 8k29:F (3.18) BS02 dna N/A N/A A0ACD6B8J4 N/A
    845851 8k29:G (3.18) BS01 rna N/A N/A A0ACD6B8J4 N/A
    845852 8k29:G (3.18) BS02 dna N/A N/A A0ACD6B8J4 N/A
    845853 8k29:H (3.18) BS01 rna N/A N/A A0ACD6B8J4 N/A
    845854 8k29:H (3.18) BS02 dna N/A N/A A0ACD6B8J4 N/A
    845855 8k29:I (3.18) BS01 rna N/A GO:0004519 ... A0ACD6B8J3 N/A
    845856 8k2a:L4 (2.9) BS01 rna N/A GO:0003723 ... Q6P161 38942792
    845857 8k2a:L6 (2.9) BS01 rna N/A GO:0003735 ... Q9BQC6 38942792
    845858 8k2a:L8 (2.9) BS01 rna N/A GO:0003735 ... Q8TAE8 38942792
    845859 8k2a:LB (2.9) BS01 rna N/A GO:0003723 ... Q5T653 38942792
    845860 8k2a:LB (2.9) BS02 MG N/A GO:0003723 ... Q5T653 38942792
    845861 8k2a:LC (2.9) BS01 rna N/A GO:0003723 ... P09001 38942792
    845862 8k2a:LD (2.9) BS01 rna N/A GO:0003723 ... Q9BYD3 38942792
    845863 8k2a:LI (2.9) BS01 rna N/A GO:0003723 ... Q9BYD2 38942792
    845864 8k2a:LJ (2.9) BS01 rna N/A GO:0003723 ... Q7Z7H8 38942792
    845865 8k2a:LK (2.9) BS01 rna N/A GO:0003723 ... Q9Y3B7 38942792
    845866 8k2a:LM (2.9) BS01 rna N/A GO:0003723 ... Q9BYD1 38942792
    845867 8k2a:LN (2.9) BS01 rna N/A GO:0003723 ... Q6P1L8 38942792
    845868 8k2a:LN (2.9) BS02 rna N/A GO:0003723 ... Q6P1L8 38942792
    845869 8k2a:LO (2.9) BS01 rna N/A GO:0003723 ... Q9P015 38942792
    845870 8k2a:LP (2.9) BS01 rna N/A GO:0003735 ... Q9NX20 38942792
    845871 8k2a:LP (2.9) BS02 MG N/A GO:0003735 ... Q9NX20 38942792
    845872 8k2a:LQ (2.9) BS01 rna N/A GO:0003735 ... Q9NRX2 38942792
    845873 8k2a:LR (2.9) BS01 rna N/A GO:0003735 ... Q9H0U6 38942792
    845874 8k2a:LR (2.9) BS02 rna N/A GO:0003735 ... Q9H0U6 38942792
    845875 8k2a:LS (2.9) BS01 rna N/A GO:0003735 ... P49406 38942792
    845876 8k2a:LT (2.9) BS01 rna N/A GO:0003723 ... Q9BYC9 38942792
    845877 8k2a:LU (2.9) BS01 rna N/A GO:0003723 ... Q7Z2W9 38942792
    845878 8k2a:LV (2.9) BS01 rna N/A GO:0003735 ... Q9NWU5 38942792
    845879 8k2a:LW (2.9) BS01 rna N/A GO:0003723 ... Q16540 38942792
    845880 8k2a:LX (2.9) BS01 rna N/A GO:0003723 ... Q96A35 38942792
    845881 8k2a:La (2.9) BS01 rna N/A GO:0003723 ... Q9P0M9 38942792
    845882 8k2a:Lb (2.9) BS01 rna N/A GO:0003723 ... Q13084 38942792
    845883 8k2a:Ld (2.9) BS01 rna N/A GO:0003735 ... Q8TCC3 38942792
    845884 8k2a:Lf (2.9) BS01 rna N/A GO:0003723 ... Q9BYC8 38942792
    845885 8k2a:Lf (2.9) BS02 ZN N/A GO:0003723 ... Q9BYC8 38942792
    845886 8k2a:Lg (2.9) BS01 rna N/A GO:0003735 ... O75394 38942792
    845887 8k2a:Lh (2.9) BS01 rna N/A GO:0003735 ... Q9BQ48 38942792
    845888 8k2a:Li (2.9) BS01 rna N/A GO:0003735 ... Q9NZE8 38942792
    845889 8k2a:Lj (2.9) BS01 rna N/A GO:0003735 ... Q9P0J6 38942792
    845890 8k2a:Lj (2.9) BS02 ZN N/A GO:0003735 ... Q9P0J6 38942792
    845891 8k2a:Lk (2.9) BS01 rna N/A GO:0003723 ... Q9BZE1 38942792
    845892 8k2a:Ll (2.9) BS01 rna N/A GO:0005515 ... Q96DV4 38942792
    845893 8k2a:Ll (2.9) BS02 rna N/A GO:0005515 ... Q96DV4 38942792
    845894 8k2a:Ln (2.9) BS01 rna N/A GO:0003723 ... Q9NQ50 38942792
    845895 8k2a:Lo (2.9) BS01 rna N/A GO:0003723 ... Q8IXM3 38942792
    845896 8k2a:Lp (2.9) BS01 rna N/A GO:0003723 ... Q9Y6G3 38942792
    845897 8k2a:Lq (2.9) BS01 rna N/A GO:0003723 ... Q8N983 38942792
    845898 8k2a:Lr (2.9) BS01 rna N/A GO:0003723 ... Q9H9J2 38942792
    845899 8k2a:Lu (2.9) BS01 rna N/A GO:0003735 ... Q9HD33 38942792
    845900 8k2a:Lv (2.9) BS01 rna N/A GO:0005515 ... Q96GC5 38942792
    845901 8k2a:Lv (2.9) BS02 rna N/A GO:0005515 ... Q96GC5 38942792
    845902 8k2a:Lw (2.9) BS01 rna N/A GO:0003735 ... Q13405 38942792
    845903 8k2a:Ly (2.9) BS01 rna N/A GO:0003735 ... Q4U2R6 38942792
    845904 8k2a:Lz (2.9) BS01 rna N/A GO:0003735 ... A8K7J6 38942792
    845905 8k2a:SB (2.9) BS01 rna N/A GO:0003735 ... Q9Y399 38942792
    845906 8k2a:SB (2.9) BS02 ZN N/A GO:0003735 ... Q9Y399 38942792
    845907 8k2a:SE (2.9) BS01 rna N/A GO:0003723 ... P82675 38942792
    845908 8k2a:SF (2.9) BS01 rna N/A GO:0003735 ... P82932 38942792
    845909 8k2a:SG (2.9) BS01 rna N/A GO:0003723 ... Q9Y2R9 38942792
    845910 8k2a:SI (2.9) BS01 rna N/A GO:0003723 ... P82933 38942792
    845911 8k2a:SJ (2.9) BS01 rna N/A GO:0005739 ... P82664 38942792
    845912 8k2a:SK (2.9) BS01 rna N/A GO:0003723 ... P82912 38942792
    845913 8k2a:SL (2.9) BS01 rna N/A GO:0003723 ... O15235 38942792
    845914 8k2a:SN (2.9) BS01 rna N/A GO:0003723 ... O60783 38942792
    845915 8k2a:SO (2.9) BS01 rna N/A GO:0003723 ... P82914 38942792
    845916 8k2a:SP (2.9) BS01 rna N/A GO:0003735 ... Q9Y3D3 38942792
    845917 8k2a:SQ (2.9) BS01 rna N/A GO:0003735 ... Q9Y2R5 38942792
    845918 8k2a:SR (2.9) BS01 rna N/A GO:0003735 ... Q9NVS2 38942792
    845919 8k2a:SS (2.9) BS01 rna N/A GO:0003735 ... Q9Y676 38942792
    845920 8k2a:SS (2.9) BS02 ZN N/A GO:0003735 ... Q9Y676 38942792
    845921 8k2a:ST (2.9) BS01 rna N/A GO:0003735 ... Q9Y3D5 38942792
    845922 8k2a:ST (2.9) BS02 ZN N/A GO:0003735 ... Q9Y3D5 38942792
    845923 8k2a:SW (2.9) BS01 rna N/A GO:0003723 ... P82921 38942792
    845924 8k2a:SY (2.9) BS01 rna N/A GO:0003723 ... Q9Y3D9 38942792
    845925 8k2a:SZ (2.9) BS01 rna N/A GO:0003723 ... Q96EL2 38942792
    845926 8k2a:Sa (2.9) BS01 rna N/A GO:0003735 ... P82663 38942792
    845927 8k2a:Sa (2.9) BS02 ZN N/A GO:0003735 ... P82663 38942792
    845928 8k2a:Sb (2.9) BS01 rna N/A GO:0003723 ... Q9BYN8 38942792
    845929 8k2a:Sc (2.9) BS01 rna N/A GO:0000049 ... Q92552 38942792
    845930 8k2a:Se (2.9) BS01 rna N/A GO:0003723 ... P51398 38942792
    845931 8k2a:Se (2.9) BS02 GDP N/A GO:0003723 ... P51398 38942792
    845932 8k2a:Sf (2.9) BS01 rna N/A GO:0003723 ... Q9NP92 38942792
    845933 8k2a:Si (2.9) BS01 rna N/A GO:0003735 ... Q9Y291 38942792
    845934 8k2a:Sj (2.9) BS01 rna N/A GO:0003735 ... P82930 38942792
    845935 8k2a:Sk (2.9) BS01 rna N/A GO:0003723 ... P82673 38942792
    845936 8k2a:Sm (2.9) BS01 rna N/A GO:0001650 ... Q96BP2 38942792
    845937 8k2a:Sn (2.9) BS01 rna N/A GO:0005515 ... Q9NWT8 38942792
    845938 8k2a:Sn (2.9) BS02 rna N/A GO:0005515 ... Q9NWT8 38942792
    845939 8k2b:L4 (3.4) BS01 rna N/A GO:0003723 ... Q6P161 38942792
    845940 8k2b:L6 (3.4) BS01 rna N/A GO:0003735 ... Q9BQC6 38942792
    845941 8k2b:L8 (3.4) BS01 rna N/A GO:0003735 ... Q8TAE8 38942792
    845942 8k2b:LB (3.4) BS01 rna N/A GO:0003723 ... Q5T653 38942792
    845943 8k2b:LC (3.4) BS01 rna N/A GO:0003723 ... P09001 38942792
    845944 8k2b:LD (3.4) BS01 rna N/A GO:0003723 ... Q9BYD3 38942792
    845945 8k2b:LI (3.4) BS01 rna N/A GO:0003723 ... Q9BYD2 38942792
    845946 8k2b:LJ (3.4) BS01 rna N/A GO:0003723 ... Q7Z7H8 38942792
    845947 8k2b:LK (3.4) BS01 rna N/A GO:0003723 ... Q9Y3B7 38942792
    845948 8k2b:LM (3.4) BS01 rna N/A GO:0003723 ... Q9BYD1 38942792
    845949 8k2b:LN (3.4) BS01 rna N/A GO:0003723 ... Q6P1L8 38942792
    845950 8k2b:LO (3.4) BS01 rna N/A GO:0003723 ... Q9P015 38942792
    845951 8k2b:LP (3.4) BS01 rna N/A GO:0003735 ... Q9NX20 38942792
    845952 8k2b:LQ (3.4) BS01 rna N/A GO:0003735 ... Q9NRX2 38942792
    845953 8k2b:LR (3.4) BS01 rna N/A GO:0003735 ... Q9H0U6 38942792
    845954 8k2b:LR (3.4) BS02 rna N/A GO:0003735 ... Q9H0U6 38942792
    845955 8k2b:LS (3.4) BS01 rna N/A GO:0003735 ... P49406 38942792
    845956 8k2b:LT (3.4) BS01 rna N/A GO:0003723 ... Q9BYC9 38942792
    845957 8k2b:LU (3.4) BS01 rna N/A GO:0003723 ... Q7Z2W9 38942792
    845958 8k2b:LV (3.4) BS01 rna N/A GO:0003735 ... Q9NWU5 38942792
    845959 8k2b:LW (3.4) BS01 rna N/A GO:0003723 ... Q16540 38942792
    845960 8k2b:LX (3.4) BS01 rna N/A GO:0003723 ... Q96A35 38942792
    845961 8k2b:La (3.4) BS01 rna N/A GO:0003723 ... Q9P0M9 38942792
    845962 8k2b:Lb (3.4) BS01 rna N/A GO:0003723 ... Q13084 38942792
    845963 8k2b:Ld (3.4) BS01 rna N/A GO:0003735 ... Q8TCC3 38942792
    845964 8k2b:Lf (3.4) BS01 rna N/A GO:0003723 ... Q9BYC8 38942792
    845965 8k2b:Lf (3.4) BS02 ZN N/A GO:0003723 ... Q9BYC8 38942792
    845966 8k2b:Lg (3.4) BS01 rna N/A GO:0003735 ... O75394 38942792
    845967 8k2b:Lh (3.4) BS01 rna N/A GO:0003735 ... Q9BQ48 38942792
    845968 8k2b:Li (3.4) BS01 rna N/A GO:0003735 ... Q9NZE8 38942792
    845969 8k2b:Lj (3.4) BS01 rna N/A GO:0003735 ... Q9P0J6 38942792
    845970 8k2b:Lj (3.4) BS02 ZN N/A GO:0003735 ... Q9P0J6 38942792
    845971 8k2b:Lk (3.4) BS01 rna N/A GO:0003723 ... Q9BZE1 38942792
    845972 8k2b:Ll (3.4) BS01 rna N/A GO:0005515 ... Q96DV4 38942792
    845973 8k2b:Ll (3.4) BS02 rna N/A GO:0005515 ... Q96DV4 38942792
    845974 8k2b:Ln (3.4) BS01 rna N/A GO:0003723 ... Q9NQ50 38942792
    845975 8k2b:Lo (3.4) BS01 rna N/A GO:0003723 ... Q8IXM3 38942792
    845976 8k2b:Lp (3.4) BS01 rna N/A GO:0003723 ... Q9Y6G3 38942792
    845977 8k2b:Lq (3.4) BS01 rna N/A GO:0003723 ... Q8N983 38942792
    845978 8k2b:Lr (3.4) BS01 rna N/A GO:0003723 ... Q9H9J2 38942792
    845979 8k2b:Lu (3.4) BS01 rna N/A GO:0003735 ... Q9HD33 38942792
    845980 8k2b:Lv (3.4) BS01 rna N/A GO:0005515 ... Q96GC5 38942792
    845981 8k2b:Lv (3.4) BS02 rna N/A GO:0005515 ... Q96GC5 38942792
    845982 8k2b:Lw (3.4) BS01 rna N/A GO:0003735 ... Q13405 38942792
    845983 8k2b:Ly (3.4) BS01 rna N/A GO:0003735 ... Q4U2R6 38942792
    845984 8k2b:Lz (3.4) BS01 rna N/A GO:0003735 ... A8K7J6 38942792
    845985 8k2b:SR (3.4) BS01 rna N/A GO:0003735 ... Q9NVS2 38942792
    845986 8k2b:SR (3.4) BS02 ZN N/A GO:0003735 ... Q9NVS2 38942792
    845987 8k2b:Sf (3.4) BS01 rna N/A GO:0003723 ... Q9NP92 38942792
    845988 8k2b:u (3.4) BS01 rna N/A GO:0005515 ... Q96EH3 38942792
    845989 8k2b:v (3.4) BS01 PNS N/A GO:0000266 ... L0R8F8 38942792
    845990 8k2c:CA (2.4) BS01 rna N/A GO:0003676 ... Q9UQ80 38942792
    845991 8k2c:CE (2.4) BS01 rna N/A GO:0003713 ... Q96CT7 38942792
    845992 8k2c:CE (2.4) BS02 rna N/A GO:0003713 ... Q96CT7 38942792
    845993 8k2c:LA (2.4) BS01 rna N/A GO:0002181 ... P62917 38942792
    845994 8k2c:LA (2.4) BS02 rna N/A GO:0002181 ... P62917 38942792
    845995 8k2c:LA (2.4) BS03 MG N/A GO:0002181 ... P62917 38942792
    845996 8k2c:LB (2.4) BS01 rna N/A GO:0002181 ... P39023 38942792
    845997 8k2c:LC (2.4) BS01 rna N/A GO:0002181 ... P36578 38942792
    845998 8k2c:LC (2.4) BS02 rna N/A GO:0002181 ... P36578 38942792
    845999 8k2c:LD (2.4) BS01 rna N/A GO:0000027 ... P46777 38942792
    846000 8k2c:LD (2.4) BS02 rna N/A GO:0000027 ... P46777 38942792

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).