SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    846001 8oj0:Le (3.3) BS01 rna ? GO:0002181 ... P62910 38383785
    846002 8oj0:Lf (3.3) BS01 rna ? GO:0000049 ... P18077 38383785
    846003 8oj0:Lg (3.3) BS01 rna ? GO:0002181 ... P49207 38383785
    846004 8oj0:Lg (3.3) BS02 ZN ? GO:0002181 ... P49207 38383785
    846005 8oj0:Lh (3.3) BS01 rna ? GO:0000463 ... P42766 38383785
    846006 8oj0:Lh (3.3) BS02 rna ? GO:0000463 ... P42766 38383785
    846007 8oj0:Li (3.3) BS01 rna ? GO:0002181 ... Q9Y3U8 38383785
    846008 8oj0:Lj (3.3) BS01 rna ? GO:0002181 ... P61927 38383785
    846009 8oj0:Lj (3.3) BS02 rna ? GO:0002181 ... P61927 38383785
    846010 8oj0:Lj (3.3) BS03 ZN ? GO:0002181 ... P61927 38383785
    846011 8oj0:Lk (3.3) BS01 rna ? GO:0001501 ... P63173 38383785
    846012 8oj0:Ll (3.3) BS01 rna ? GO:0002181 ... P62891 38383785
    846013 8oj0:Ll (3.3) BS02 rna ? GO:0002181 ... P62891 38383785
    846014 8oj0:Lm (3.3) BS01 rna ? GO:0002181 ... P62987 38383785
    846015 8oj0:Lm (3.3) BS02 ZN ? GO:0002181 ... P62987 38383785
    846016 8oj0:Lo (3.3) BS01 rna ? GO:0002181 ... P83881 38383785
    846017 8oj0:Lo (3.3) BS02 ZN ? GO:0002181 ... P83881 38383785
    846018 8oj0:Lp (3.3) BS01 rna ? GO:0002181 ... P61513 38383785
    846019 8oj0:Lp (3.3) BS02 ZN ? GO:0002181 ... P61513 38383785
    846020 8oj0:Lr (3.3) BS01 rna ? GO:0002181 ... P46779 38383785
    846021 8oj0:Lz (3.3) BS01 rna ? GO:0002181 ... P62906 38383785
    846022 8oj1:A (2.57) BS01 dna ? GO:0003677 ... A0A0G3FH20 N/A
    846023 8oj2:A (2.56) BS01 dna ? GO:0003677 ... A0A176WDW1 N/A
    846024 8oj3:0 (3.5) BS01 rna N/A GO:0002181 ... A0A1D8PLC9 N/A
    846025 8oj3:0 (3.5) BS02 rna N/A GO:0002181 ... A0A1D8PLC9 N/A
    846026 8oj3:12 (3.5) BS01 rna N/A GO:0003735 ... Q5AJF7 N/A
    846027 8oj3:2 (3.5) BS01 rna N/A GO:0003735 ... A0A1D8PGY0 N/A
    846028 8oj3:2 (3.5) BS02 rna N/A GO:0003735 ... A0A1D8PGY0 N/A
    846029 8oj3:2 (3.5) BS03 MG N/A GO:0003735 ... A0A1D8PGY0 N/A
    846030 8oj3:5 (3.5) BS01 rna N/A GO:0002181 ... A0A1D8PM41 N/A
    846031 8oj3:6 (3.5) BS01 rna N/A GO:0003735 ... A0A1D8PPT5 N/A
    846032 8oj3:6 (3.5) BS02 MG N/A GO:0003735 ... A0A1D8PPT5 N/A
    846033 8oj3:7 (3.5) BS01 rna N/A GO:0002181 ... Q5A6A1 N/A
    846034 8oj3:7 (3.5) BS02 rna N/A GO:0002181 ... Q5A6A1 N/A
    846035 8oj3:8 (3.5) BS01 rna N/A GO:0003735 ... A0A1D8PPS1 N/A
    846036 8oj3:8 (3.5) BS02 rna N/A GO:0003735 ... A0A1D8PPS1 N/A
    846037 8oj3:9 (3.5) BS01 rna N/A GO:0002181 ... A0A1D8PCQ5 N/A
    846038 8oj3:9 (3.5) BS02 rna N/A GO:0002181 ... A0A1D8PCQ5 N/A
    846039 8oj3:AA (3.5) BS01 rna N/A GO:0003735 ... A0A1D8PFG4 N/A
    846040 8oj3:AB (3.5) BS01 rna N/A GO:0003723 ... A0A1D8PSC5 N/A
    846041 8oj3:AB (3.5) BS02 MG N/A GO:0003723 ... A0A1D8PSC5 N/A
    846042 8oj3:AC (3.5) BS01 rna N/A GO:0002181 ... A0A1D8PF57 N/A
    846043 8oj3:AD (3.5) BS01 rna N/A GO:0003723 ... A0A1D8PM75 N/A
    846044 8oj3:AE (3.5) BS01 rna N/A GO:0002181 ... A0A1D8PHF5 N/A
    846045 8oj3:AF (3.5) BS01 rna N/A GO:0003735 ... A0A1D8PPN6 N/A
    846046 8oj3:AG (3.5) BS01 rna N/A GO:0002181 ... A0A1D8PHH4 N/A
    846047 8oj3:AH (3.5) BS01 rna N/A GO:0003735 ... A0A1D8PDZ1 N/A
    846048 8oj3:AH (3.5) BS02 ZN N/A GO:0003735 ... A0A1D8PDZ1 N/A
    846049 8oj3:AI (3.5) BS01 rna N/A GO:0000463 ... A0A1D8PK30 N/A
    846050 8oj3:AI (3.5) BS02 rna N/A GO:0000463 ... A0A1D8PK30 N/A
    846051 8oj3:AJ (3.5) BS01 rna N/A GO:0002181 ... A0A1D8PH21 N/A
    846052 8oj3:AJ (3.5) BS02 MG N/A GO:0002181 ... A0A1D8PH21 N/A
    846053 8oj3:AJ (3.5) BS03 MG N/A GO:0002181 ... A0A1D8PH21 N/A
    846054 8oj3:AK (3.5) BS01 rna N/A GO:0003723 ... A0A1D8PF45 N/A
    846055 8oj3:AK (3.5) BS02 rna N/A GO:0003723 ... A0A1D8PF45 N/A
    846056 8oj3:AK (3.5) BS03 ZN N/A GO:0003723 ... A0A1D8PF45 N/A
    846057 8oj3:AL (3.5) BS01 rna N/A GO:0003735 ... A0A1D8PG16 N/A
    846058 8oj3:AM (3.5) BS01 rna N/A GO:0005737 ... A0A1D8PDT4 N/A
    846059 8oj3:AM (3.5) BS02 rna N/A GO:0005737 ... A0A1D8PDT4 N/A
    846060 8oj3:AN (3.5) BS01 rna N/A GO:0005737 ... A0A1D8PL68 N/A
    846061 8oj3:AN (3.5) BS02 ZN N/A GO:0005737 ... A0A1D8PL68 N/A
    846062 8oj3:AP (3.5) BS01 rna N/A GO:0005737 ... A0A1D8PEV4 N/A
    846063 8oj3:AP (3.5) BS02 3K5 N/A GO:0005737 ... A0A1D8PEV4 N/A
    846064 8oj3:AP (3.5) BS03 ZN N/A GO:0005737 ... A0A1D8PEV4 N/A
    846065 8oj3:AP (3.5) BS04 MG N/A GO:0005737 ... A0A1D8PEV4 N/A
    846066 8oj3:AQ (3.5) BS01 rna N/A GO:0005737 ... A0A1D8PP14 N/A
    846067 8oj3:AQ (3.5) BS02 ZN N/A GO:0005737 ... A0A1D8PP14 N/A
    846068 8oj3:AR (3.5) BS01 rna N/A GO:0001403 ... P83774 N/A
    846069 8oj3:AW (3.5) BS01 rna N/A GO:0002181 ... A0A1D8PF08 N/A
    846070 8oj3:AW (3.5) BS02 MG N/A GO:0002181 ... A0A1D8PF08 N/A
    846071 8oj3:AX (3.5) BS01 rna N/A GO:0000027 ... Q59LS1 N/A
    846072 8oj3:AY (3.5) BS01 rna N/A GO:0003723 ... A0A1D8PFV1 N/A
    846073 8oj3:AY (3.5) BS02 rna N/A GO:0003723 ... A0A1D8PFV1 N/A
    846074 8oj3:AY (3.5) BS03 MG N/A GO:0003723 ... A0A1D8PFV1 N/A
    846075 8oj3:AZ (3.5) BS01 rna N/A GO:0000027 ... Q5AGZ7 N/A
    846076 8oj3:AZ (3.5) BS02 rna N/A GO:0000027 ... Q5AGZ7 N/A
    846077 8oj3:BA (3.5) BS01 rna N/A GO:0002181 ... A0A1D8PCX8 N/A
    846078 8oj3:BB (3.5) BS01 rna N/A GO:0000463 ... A0A1D8PDL6 N/A
    846079 8oj3:BB (3.5) BS02 rna N/A GO:0000463 ... A0A1D8PDL6 N/A
    846080 8oj3:BB (3.5) BS03 MG N/A GO:0000463 ... A0A1D8PDL6 N/A
    846081 8oj3:BC (3.5) BS01 rna N/A GO:0000470 ... Q5ANA1 N/A
    846082 8oj3:BC (3.5) BS02 rna N/A GO:0000470 ... Q5ANA1 N/A
    846083 8oj3:BD (3.5) BS01 rna N/A GO:0002181 ... Q5AEN2 N/A
    846084 8oj3:BE (3.5) BS01 rna N/A GO:0003735 ... Q5AIB8 N/A
    846085 8oj3:BE (3.5) BS02 rna N/A GO:0003735 ... Q5AIB8 N/A
    846086 8oj3:BE (3.5) BS03 MG N/A GO:0003735 ... Q5AIB8 N/A
    846087 8oj3:BF (3.5) BS01 rna N/A GO:0003723 ... A0A1D8PHW1 N/A
    846088 8oj3:BF (3.5) BS02 rna N/A GO:0003723 ... A0A1D8PHW1 N/A
    846089 8oj3:BG (3.5) BS01 rna N/A GO:0003723 ... O59931 N/A
    846090 8oj3:BG (3.5) BS02 rna N/A GO:0003723 ... O59931 N/A
    846091 8oj3:BG (3.5) BS03 rna N/A GO:0003723 ... O59931 N/A
    846092 8oj3:BH (3.5) BS01 rna N/A GO:0003723 ... A0A1D8PFL9 N/A
    846093 8oj3:BI (3.5) BS01 rna N/A GO:0002181 ... Q5A6R1 N/A
    846094 8oj3:BI (3.5) BS02 rna N/A GO:0002181 ... Q5A6R1 N/A
    846095 8oj3:BJ (3.5) BS01 rna N/A GO:0003729 ... Q5AB87 N/A
    846096 8oj3:BK (3.5) BS01 rna N/A GO:0002181 ... Q59TE0 N/A
    846097 8oj3:BK (3.5) BS02 rna N/A GO:0002181 ... Q59TE0 N/A
    846098 8oj3:BK (3.5) BS03 MG N/A GO:0002181 ... Q59TE0 N/A
    846099 8oj3:BL (3.5) BS01 rna N/A GO:0003723 ... A0A1D8PK43 N/A
    846100 8oj3:BM (3.5) BS01 rna N/A GO:0003723 ... A0A1D8PK40 N/A
    846101 8oj3:BM (3.5) BS02 rna N/A GO:0003723 ... A0A1D8PK40 N/A
    846102 8oj3:BN (3.5) BS01 rna N/A GO:0002181 ... A0A1D8PLC9 N/A
    846103 8oj3:BN (3.5) BS02 rna N/A GO:0002181 ... A0A1D8PLC9 N/A
    846104 8oj3:BO (3.5) BS01 rna N/A GO:0003735 ... A0A1D8PGY0 N/A
    846105 8oj3:BO (3.5) BS02 rna N/A GO:0003735 ... A0A1D8PGY0 N/A
    846106 8oj3:BO (3.5) BS03 MG N/A GO:0003735 ... A0A1D8PGY0 N/A
    846107 8oj3:BP (3.5) BS01 rna N/A GO:0002181 ... A0A1D8PM41 N/A
    846108 8oj3:BQ (3.5) BS01 rna N/A GO:0003735 ... A0A1D8PPT5 N/A
    846109 8oj3:BQ (3.5) BS02 rna N/A GO:0003735 ... A0A1D8PPT5 N/A
    846110 8oj3:BQ (3.5) BS03 MG N/A GO:0003735 ... A0A1D8PPT5 N/A
    846111 8oj3:BR (3.5) BS01 rna N/A GO:0002181 ... Q5A6A1 N/A
    846112 8oj3:BR (3.5) BS02 rna N/A GO:0002181 ... Q5A6A1 N/A
    846113 8oj3:BS (3.5) BS01 rna N/A GO:0003735 ... A0A1D8PPS1 N/A
    846114 8oj3:BS (3.5) BS02 rna N/A GO:0003735 ... A0A1D8PPS1 N/A
    846115 8oj3:BT (3.5) BS01 rna N/A GO:0002181 ... A0A1D8PCQ5 N/A
    846116 8oj3:BT (3.5) BS02 rna N/A GO:0002181 ... A0A1D8PCQ5 N/A
    846117 8oj3:BU (3.5) BS01 rna N/A GO:0003735 ... A0A1D8PFG4 N/A
    846118 8oj3:BV (3.5) BS01 rna N/A GO:0003723 ... A0A1D8PSC5 N/A
    846119 8oj3:BW (3.5) BS01 rna N/A GO:0002181 ... A0A1D8PF57 N/A
    846120 8oj3:BX (3.5) BS01 rna N/A GO:0003723 ... A0A1D8PM75 N/A
    846121 8oj3:BY (3.5) BS01 rna N/A GO:0002181 ... A0A1D8PHF5 N/A
    846122 8oj3:BZ (3.5) BS01 rna N/A GO:0003735 ... A0A1D8PPN6 N/A
    846123 8oj3:C (3.5) BS01 rna N/A GO:0000028 ... O42817 N/A
    846124 8oj3:CA (3.5) BS01 rna N/A GO:0002181 ... A0A1D8PHH4 N/A
    846125 8oj3:CB (3.5) BS01 rna N/A GO:0003735 ... A0A1D8PDZ1 N/A
    846126 8oj3:CC (3.5) BS01 rna N/A GO:0000463 ... A0A1D8PK30 N/A
    846127 8oj3:CC (3.5) BS02 rna N/A GO:0000463 ... A0A1D8PK30 N/A
    846128 8oj3:CD (3.5) BS01 rna N/A GO:0002181 ... A0A1D8PH21 N/A
    846129 8oj3:CE (3.5) BS01 rna N/A GO:0003723 ... A0A1D8PF45 N/A
    846130 8oj3:CE (3.5) BS02 rna N/A GO:0003723 ... A0A1D8PF45 N/A
    846131 8oj3:CE (3.5) BS03 ZN N/A GO:0003723 ... A0A1D8PF45 N/A
    846132 8oj3:CF (3.5) BS01 rna N/A GO:0003735 ... A0A1D8PG16 N/A
    846133 8oj3:CG (3.5) BS01 rna N/A GO:0005737 ... A0A1D8PDT4 N/A
    846134 8oj3:CG (3.5) BS02 rna N/A GO:0005737 ... A0A1D8PDT4 N/A
    846135 8oj3:CH (3.5) BS01 rna N/A GO:0005737 ... A0A1D8PL68 N/A
    846136 8oj3:CH (3.5) BS02 ZN N/A GO:0005737 ... A0A1D8PL68 N/A
    846137 8oj3:CJ (3.5) BS01 rna N/A GO:0005737 ... A0A1D8PEV4 N/A
    846138 8oj3:CJ (3.5) BS02 3K5 N/A GO:0005737 ... A0A1D8PEV4 N/A
    846139 8oj3:CJ (3.5) BS03 ZN N/A GO:0005737 ... A0A1D8PEV4 N/A
    846140 8oj3:CK (3.5) BS01 rna N/A GO:0005737 ... A0A1D8PP14 N/A
    846141 8oj3:CK (3.5) BS02 ZN N/A GO:0005737 ... A0A1D8PP14 N/A
    846142 8oj3:CL (3.5) BS01 rna N/A GO:0000723 ... A0A1D8PK71 N/A
    846143 8oj3:CL (3.5) BS02 rna N/A GO:0000723 ... A0A1D8PK71 N/A
    846144 8oj3:CN (3.5) BS01 rna N/A GO:0000028 ... O42817 N/A
    846145 8oj3:CO (3.5) BS01 rna N/A GO:0003735 ... P40910 N/A
    846146 8oj3:CP (3.5) BS01 rna N/A GO:0000054 ... Q5A900 N/A
    846147 8oj3:CQ (3.5) BS01 rna N/A GO:0000054 ... A0A1D8PSV5 N/A
    846148 8oj3:CR (3.5) BS01 rna N/A GO:0003723 ... A0A1D8PCI6 N/A
    846149 8oj3:CS (3.5) BS01 rna N/A GO:0000028 ... Q5AG43 N/A
    846150 8oj3:CT (3.5) BS01 rna N/A GO:0005737 ... A0A1D8PL99 N/A
    846151 8oj3:CU (3.5) BS01 rna N/A GO:0005737 ... Q5AJ93 N/A
    846152 8oj3:CV (3.5) BS01 rna N/A GO:0000462 ... Q59T44 N/A
    846153 8oj3:CV (3.5) BS02 rna N/A GO:0000462 ... Q59T44 N/A
    846154 8oj3:CW (3.5) BS01 rna N/A GO:0003735 ... A0A1D8PGY8 N/A
    846155 8oj3:CX (3.5) BS01 rna N/A GO:0003674 ... A0A1D8PI15 N/A
    846156 8oj3:CY (3.5) BS01 rna N/A GO:0003735 ... A0A1D8PN83 N/A
    846157 8oj3:CZ (3.5) BS01 rna N/A GO:0000028 ... Q5ADQ6 N/A
    846158 8oj3:D (3.5) BS01 rna N/A GO:0003735 ... P40910 N/A
    846159 8oj3:DA (3.5) BS01 rna N/A GO:0003735 ... A0A1D8PPE0 N/A
    846160 8oj3:DB (3.5) BS01 rna N/A GO:0000028 ... A0A1D8PDT3 N/A
    846161 8oj3:DB (3.5) BS02 MG N/A GO:0000028 ... A0A1D8PDT3 N/A
    846162 8oj3:DC (3.5) BS01 rna N/A GO:0000028 ... A0A1D8PK22 N/A
    846163 8oj3:DD (3.5) BS01 rna N/A GO:0000462 ... A0A1D8PCW6 N/A
    846164 8oj3:DE (3.5) BS01 rna N/A GO:0003735 ... A0A1D8PEY9 N/A
    846165 8oj3:DF (3.5) BS01 rna N/A GO:0005737 ... A0A1D8PQQ5 N/A
    846166 8oj3:DG (3.5) BS01 rna N/A GO:0000028 ... A0A1D8PK61 N/A
    846167 8oj3:DG (3.5) BS02 MG N/A GO:0000028 ... A0A1D8PK61 N/A
    846168 8oj3:DH (3.5) BS01 rna N/A GO:0003735 ... Q5A389 N/A
    846169 8oj3:DI (3.5) BS01 rna N/A GO:0000447 ... A0A1D8PCG7 N/A
    846170 8oj3:DJ (3.5) BS01 rna N/A GO:0003735 ... Q96W54 N/A
    846171 8oj3:DK (3.5) BS01 rna N/A GO:0003735 ... A0A1D8PDU3 N/A
    846172 8oj3:DK (3.5) BS02 MG N/A GO:0003735 ... A0A1D8PDU3 N/A
    846173 8oj3:DL (3.5) BS01 rna N/A GO:0005737 ... Q5A7K0 N/A
    846174 8oj3:DM (3.5) BS01 rna N/A GO:0003735 ... A0A1D8PNQ6 N/A
    846175 8oj3:DN (3.5) BS01 rna N/A GO:0003729 ... Q5ALV6 N/A
    846176 8oj3:DN (3.5) BS02 ZN N/A GO:0003729 ... Q5ALV6 N/A
    846177 8oj3:DO (3.5) BS01 rna N/A GO:0000028 ... A0A1D8PTI7 N/A
    846178 8oj3:DP (3.5) BS01 rna N/A GO:0000028 ... A0A1D8PQN0 N/A
    846179 8oj3:DQ (3.5) BS01 rna N/A GO:0002181 ... A0A1D8PTR4 N/A
    846180 8oj3:DR (3.5) BS01 rna N/A GO:0005737 ... A0A1D8PSK2 N/A
    846181 8oj3:DS (3.5) BS01 rna N/A GO:0003735 ... Q5A109 N/A
    846182 8oj3:DT (3.5) BS01 rna N/A GO:0001403 ... P83774 N/A
    846183 8oj3:E (3.5) BS01 rna N/A GO:0000054 ... Q5A900 N/A
    846184 8oj3:F (3.5) BS01 rna N/A GO:0000054 ... A0A1D8PSV5 N/A
    846185 8oj3:G (3.5) BS01 rna N/A GO:0003723 ... A0A1D8PCI6 N/A
    846186 8oj3:H (3.5) BS01 rna N/A GO:0000028 ... Q5AG43 N/A
    846187 8oj3:I (3.5) BS01 rna N/A GO:0005737 ... A0A1D8PL99 N/A
    846188 8oj3:J (3.5) BS01 rna N/A GO:0005737 ... Q5AJ93 N/A
    846189 8oj3:K (3.5) BS01 rna N/A GO:0000462 ... Q59T44 N/A
    846190 8oj3:K (3.5) BS02 rna N/A GO:0000462 ... Q59T44 N/A
    846191 8oj3:K (3.5) BS03 MG N/A GO:0000462 ... Q59T44 N/A
    846192 8oj3:L (3.5) BS01 rna N/A GO:0003735 ... A0A1D8PGY8 N/A
    846193 8oj3:M (3.5) BS01 rna N/A GO:0003674 ... A0A1D8PI15 N/A
    846194 8oj3:N (3.5) BS01 rna N/A GO:0003735 ... A0A1D8PN83 N/A
    846195 8oj3:O (3.5) BS01 rna N/A GO:0000028 ... Q5ADQ6 N/A
    846196 8oj3:P (3.5) BS01 rna N/A GO:0003735 ... A0A1D8PPE0 N/A
    846197 8oj3:P0 (3.5) BS01 rna N/A GO:0002181 ... A0A1D8PQS0 N/A
    846198 8oj3:P0 (3.5) BS02 MG N/A GO:0002181 ... A0A1D8PQS0 N/A
    846199 8oj3:Q (3.5) BS01 rna N/A GO:0000028 ... A0A1D8PDT3 N/A
    846200 8oj3:Q (3.5) BS02 MG N/A GO:0000028 ... A0A1D8PDT3 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).