SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    847001 8k82:Lp (3.0) BS02 ZN N/A GO:0002181 ... P0CX25 38942792
    847002 8k82:P0 (3.0) BS01 rna N/A GO:0000027 ... P05317 38942792
    847003 8k82:SA (3.0) BS01 rna N/A GO:0000028 ... P32905 38942792
    847004 8k82:SB (3.0) BS01 rna N/A GO:0000462 ... P33442 38942792
    847005 8k82:SC (3.0) BS01 rna N/A GO:0000054 ... P25443 38942792
    847006 8k82:SD (3.0) BS01 rna N/A GO:0000054 ... P05750 38942792
    847007 8k82:SE (3.0) BS01 rna N/A GO:0002181 ... P0CX35 38942792
    847008 8k82:SF (3.0) BS01 rna N/A GO:0000054 ... P26783 38942792
    847009 8k82:SG (3.0) BS01 rna N/A GO:0000462 ... P0CX37 38942792
    847010 8k82:SH (3.0) BS01 rna N/A GO:0002181 ... P26786 38942792
    847011 8k82:SI (3.0) BS01 rna N/A GO:0000462 ... P0CX39 38942792
    847012 8k82:SI (3.0) BS02 rna N/A GO:0000462 ... P0CX39 38942792
    847013 8k82:SJ (3.0) BS01 rna N/A GO:0000462 ... O13516 38942792
    847014 8k82:SK (3.0) BS01 rna N/A GO:0000054 ... Q08745 38942792
    847015 8k82:SL (3.0) BS01 rna N/A GO:0000028 ... P0CX47 38942792
    847016 8k82:SM (3.0) BS01 rna N/A GO:0000028 ... P48589 38942792
    847017 8k82:SN (3.0) BS01 rna N/A GO:0000462 ... P05756 38942792
    847018 8k82:SN (3.0) BS02 rna N/A GO:0000462 ... P05756 38942792
    847019 8k82:SO (3.0) BS01 rna N/A GO:0000028 ... P06367 38942792
    847020 8k82:SP (3.0) BS01 rna N/A GO:0000054 ... Q01855 38942792
    847021 8k82:SQ (3.0) BS01 rna N/A GO:0000462 ... P0CX51 38942792
    847022 8k82:SR (3.0) BS01 rna N/A GO:0000028 ... P02407 38942792
    847023 8k82:SS (3.0) BS01 rna N/A GO:0000054 ... P0CX55 38942792
    847024 8k82:ST (3.0) BS01 rna N/A GO:0000054 ... P07280 38942792
    847025 8k82:SU (3.0) BS01 rna N/A GO:0000462 ... P38701 38942792
    847026 8k82:SV (3.0) BS01 rna N/A GO:0000447 ... P0C0V8 38942792
    847027 8k82:SW (3.0) BS01 rna N/A GO:0002181 ... P0C0W1 38942792
    847028 8k82:SX (3.0) BS01 rna N/A GO:0000462 ... P0CX29 38942792
    847029 8k82:SY (3.0) BS01 rna N/A GO:0000462 ... P0CX31 38942792
    847030 8k82:SZ (3.0) BS01 rna N/A GO:0002181 ... Q3E792 38942792
    847031 8k82:Sa (3.0) BS01 rna N/A GO:0000054 ... P39939 38942792
    847032 8k82:Sa (3.0) BS02 ZN N/A GO:0000054 ... P39939 38942792
    847033 8k82:Sb (3.0) BS01 rna N/A GO:0000028 ... P35997 38942792
    847034 8k82:Sb (3.0) BS02 ZN N/A GO:0000028 ... P35997 38942792
    847035 8k82:Sc (3.0) BS01 rna N/A GO:0000028 ... Q3E7X9 38942792
    847036 8k82:Sd (3.0) BS01 rna N/A GO:0002181 ... P41057 38942792
    847037 8k82:Sd (3.0) BS02 ZN N/A GO:0002181 ... P41057 38942792
    847038 8k82:Se (3.0) BS01 rna N/A GO:0002181 ... P0CX33 38942792
    847039 8k82:Sf (3.0) BS01 rna N/A GO:0000028 ... P05759 38942792
    847040 8k82:Sf (3.0) BS02 ZN N/A GO:0000028 ... P05759 38942792
    847041 8k82:Sg (3.0) BS01 rna N/A GO:0001965 ... P38011 38942792
    847042 8k86:A (2.06) BS01 dna ? GO:0003677 ... Q16649 38382670
    847043 8k86:A (2.06) BS02 dna ? GO:0003677 ... Q16649 38382670
    847044 8k86:B (2.06) BS01 dna ? GO:0003677 ... Q16649 38382670
    847045 8k86:B (2.06) BS02 dna ? GO:0003677 ... Q16649 38382670
    847046 8k87:A (2.9) BS01 dna N/A GO:0003676 ... Q74DF5 38923459
    847047 8k87:A (2.9) BS02 rna N/A GO:0003676 ... Q74DF5 38923459
    847048 8k87:A (2.9) BS03 MG N/A GO:0003676 ... Q74DF5 38923459
    847049 8k87:B (2.9) BS01 dna N/A N/A Q74DF6 38923459
    847050 8k87:B (2.9) BS02 rna N/A N/A Q74DF6 38923459
    847051 8k87:F (2.9) BS01 dna N/A GO:0003676 ... Q74DF5 38923459
    847052 8k87:F (2.9) BS02 rna N/A GO:0003676 ... Q74DF5 38923459
    847053 8k87:F (2.9) BS03 MG N/A GO:0003676 ... Q74DF5 38923459
    847054 8k87:G (2.9) BS01 dna N/A N/A Q74DF6 38923459
    847055 8k87:G (2.9) BS02 rna N/A N/A Q74DF6 38923459
    847056 8k88:A (2.6) BS01 dna N/A GO:0003676 ... Q74DF5 38923459
    847057 8k88:A (2.6) BS02 rna N/A GO:0003676 ... Q74DF5 38923459
    847058 8k88:A (2.6) BS03 MG N/A GO:0003676 ... Q74DF5 38923459
    847059 8k88:B (2.6) BS01 dna N/A N/A Q74DF6 38923459
    847060 8k88:B (2.6) BS02 rna N/A N/A Q74DF6 38923459
    847061 8k8a:A (2.07) BS01 dna ? GO:0003677 ... Q16649 38382670
    847062 8k8a:A (2.07) BS02 dna ? GO:0003677 ... Q16649 38382670
    847063 8k8a:B (2.07) BS01 dna ? GO:0003677 ... Q16649 38382670
    847064 8k8a:B (2.07) BS02 dna ? GO:0003677 ... Q16649 38382670
    847065 8k8c:A (2.06) BS01 dna ? GO:0003700 ... P49715 38382670
    847066 8k8c:A (2.06) BS02 dna ? GO:0003700 ... P49715 38382670
    847067 8k8c:B (2.06) BS01 dna ? GO:0003700 ... P49715 38382670
    847068 8k8c:B (2.06) BS02 dna ? GO:0003700 ... P49715 38382670
    847069 8k8d:A (2.2) BS01 dna ? GO:0003700 ... P17676 38382670
    847070 8k8d:A (2.2) BS02 dna ? GO:0003700 ... P17676 38382670
    847071 8k8d:B (2.2) BS01 dna ? GO:0003700 ... P17676 38382670
    847072 8k8d:B (2.2) BS02 dna ? GO:0003700 ... P17676 38382670
    847073 8k8e:B (2.6) BS01 peptide 3.4.23.- GO:0000122 ... P49768 38349793
    847074 8k8e:C (2.6) BS01 CLR ? GO:0000139 ... Q96BI3 38349793
    847075 8k8j:R (2.88) BS01 J3O ? GO:0004930 ... P0ABE7
    P21554
    38298116
    847076 8k8l:A (1.77) BS01 MOO ? GO:0015689 ... A0A0H3GU89 37751633
    847077 8k8s:A (3.06) BS01 dna N/A GO:0000166 ... A0A7H0DN44 38579705
    847078 8k8s:A (3.06) BS02 dna N/A GO:0000166 ... A0A7H0DN44 38579705
    847079 8k8s:A (3.06) BS03 MG N/A GO:0000166 ... A0A7H0DN44 38579705
    847080 8k8s:A (3.06) BS04 HF4 N/A GO:0000166 ... A0A7H0DN44 38579705
    847081 8k8u:A (3.05) BS01 dna N/A GO:0000166 ... A0A7H0DN44 38579705
    847082 8k8u:A (3.05) BS02 dna N/A GO:0000166 ... A0A7H0DN44 38579705
    847083 8k8u:A (3.05) BS03 MG N/A GO:0000166 ... A0A7H0DN44 38579705
    847084 8k8u:A (3.05) BS04 MG N/A GO:0000166 ... A0A7H0DN44 38579705
    847085 8k8u:A (3.05) BS05 CTP N/A GO:0000166 ... A0A7H0DN44 38579705
    847086 8k8y:A (2.54) BS01 TS6 N/A GO:0004176 ... C9DRU9 N/A
    847087 8k8y:B (2.54) BS01 TS6 N/A GO:0004176 ... C9DRU9 N/A
    847088 8k8y:C (2.54) BS01 TS6 N/A GO:0004176 ... C9DRU9 N/A
    847089 8k8y:D (2.54) BS01 TS6 N/A GO:0004176 ... C9DRU9 N/A
    847090 8k8y:E (2.54) BS01 TS6 N/A GO:0004176 ... C9DRU9 N/A
    847091 8k8y:F (2.54) BS01 TS6 N/A GO:0004176 ... C9DRU9 N/A
    847092 8k8y:G (2.54) BS01 TS6 N/A GO:0004176 ... C9DRU9 N/A
    847093 8k8z:A (2.83) BS01 TS6 N/A GO:0004176 ... C9DRU9 N/A
    847094 8k8z:B (2.83) BS01 TS6 N/A GO:0004176 ... C9DRU9 N/A
    847095 8k8z:C (2.83) BS01 TS6 N/A GO:0004176 ... C9DRU9 N/A
    847096 8k8z:D (2.83) BS01 TS6 N/A GO:0004176 ... C9DRU9 N/A
    847097 8k8z:E (2.83) BS01 TS6 N/A GO:0004176 ... C9DRU9 N/A
    847098 8k8z:F (2.83) BS01 TS6 N/A GO:0004176 ... C9DRU9 N/A
    847099 8k90:B (3.43) BS01 TS6 N/A GO:0004176 ... C9DRU9 N/A
    847100 8k90:C (3.43) BS01 TS6 N/A GO:0004176 ... C9DRU9 N/A
    847101 8k90:D (3.43) BS01 TS6 N/A GO:0004176 ... C9DRU9 N/A
    847102 8k91:A (3.03) BS01 TS6 N/A GO:0004176 ... C9DRU9 N/A
    847103 8k91:B (3.03) BS01 TS6 N/A GO:0004176 ... C9DRU9 N/A
    847104 8k91:C (3.03) BS01 TS6 N/A GO:0004176 ... C9DRU9 N/A
    847105 8k91:D (3.03) BS01 TS6 N/A GO:0004176 ... C9DRU9 N/A
    847106 8k91:E (3.03) BS01 TS6 N/A GO:0004176 ... C9DRU9 N/A
    847107 8k91:F (3.03) BS01 TS6 N/A GO:0004176 ... C9DRU9 N/A
    847108 8k91:G (3.03) BS01 TS6 N/A GO:0004176 ... C9DRU9 N/A
    847109 8k92:A (3.31) BS01 TS6 N/A GO:0004176 ... C9DRU9 N/A
    847110 8k92:B (3.31) BS01 TS6 N/A GO:0004176 ... C9DRU9 N/A
    847111 8k92:C (3.31) BS01 TS6 N/A GO:0004176 ... C9DRU9 N/A
    847112 8k92:D (3.31) BS01 TS6 N/A GO:0004176 ... C9DRU9 N/A
    847113 8k92:E (3.31) BS01 TS6 N/A GO:0004176 ... C9DRU9 N/A
    847114 8k92:F (3.31) BS01 TS6 N/A GO:0004176 ... C9DRU9 N/A
    847115 8k93:B (3.23) BS01 TS6 N/A GO:0004176 ... C9DRU9 N/A
    847116 8k93:C (3.23) BS01 TS6 N/A GO:0004176 ... C9DRU9 N/A
    847117 8k93:D (3.23) BS01 TS6 N/A GO:0004176 ... C9DRU9 N/A
    847118 8k93:E (3.23) BS01 TS6 N/A GO:0004176 ... C9DRU9 N/A
    847119 8k94:B (3.4) BS01 TS6 N/A GO:0004176 ... C9DRU9 N/A
    847120 8k94:C (3.4) BS01 TS6 N/A GO:0004176 ... C9DRU9 N/A
    847121 8k94:D (3.4) BS01 TS6 N/A GO:0004176 ... C9DRU9 N/A
    847122 8k95:A (3.05) BS01 TS6 N/A GO:0004176 ... C9DRU9 N/A
    847123 8k95:B (3.05) BS01 TS6 N/A GO:0004176 ... C9DRU9 N/A
    847124 8k95:C (3.05) BS01 TS6 N/A GO:0004176 ... C9DRU9 N/A
    847125 8k95:D (3.05) BS01 TS6 N/A GO:0004176 ... C9DRU9 N/A
    847126 8k95:E (3.05) BS01 TS6 N/A GO:0004176 ... C9DRU9 N/A
    847127 8k96:A (2.89) BS01 BO2 N/A GO:0004176 ... C9DRU9 N/A
    847128 8k96:B (2.89) BS01 BO2 N/A GO:0004176 ... C9DRU9 N/A
    847129 8k96:C (2.89) BS01 BO2 N/A GO:0004176 ... C9DRU9 N/A
    847130 8k96:D (2.89) BS01 BO2 N/A GO:0004176 ... C9DRU9 N/A
    847131 8k96:E (2.89) BS01 BO2 N/A GO:0004176 ... C9DRU9 N/A
    847132 8k96:F (2.89) BS01 BO2 N/A GO:0004176 ... C9DRU9 N/A
    847133 8k96:G (2.89) BS01 BO2 N/A GO:0004176 ... C9DRU9 N/A
    847134 8k97:A (2.73) BS01 BO2 N/A GO:0004176 ... C9DRU9 N/A
    847135 8k97:B (2.73) BS01 BO2 N/A GO:0004176 ... C9DRU9 N/A
    847136 8k97:C (2.73) BS01 BO2 N/A GO:0004176 ... C9DRU9 N/A
    847137 8k97:D (2.73) BS01 BO2 N/A GO:0004176 ... C9DRU9 N/A
    847138 8k97:E (2.73) BS01 BO2 N/A GO:0004176 ... C9DRU9 N/A
    847139 8k97:F (2.73) BS01 BO2 N/A GO:0004176 ... C9DRU9 N/A
    847140 8k9e:A (3.33) BS01 HEC ? N/A A9WEV2 38299372
    847141 8k9e:A (3.33) BS02 HEC ? N/A A9WEV2 38299372
    847142 8k9e:A (3.33) BS03 HEC ? N/A A9WEV2 38299372
    847143 8k9e:A (3.33) BS04 HEC ? N/A A9WEV2 38299372
    847144 8k9e:A (3.33) BS05 HEC ? N/A A9WEV2 38299372
    847145 8k9e:A (3.33) BS06 EL6 ? N/A A9WEV2 38299372
    847146 8k9e:B (3.33) BS01 HEC ? GO:0016491 ... A9WEV3 38299372
    847147 8k9e:B (3.33) BS02 HEC ? GO:0016491 ... A9WEV3 38299372
    847148 8k9e:B (3.33) BS03 SF4 ? GO:0016491 ... A9WEV3 38299372
    847149 8k9e:B (3.33) BS04 SF4 ? GO:0016491 ... A9WEV3 38299372
    847150 8k9e:B (3.33) BS05 SF4 ? GO:0016491 ... A9WEV3 38299372
    847151 8k9e:B (3.33) BS06 F3S ? GO:0016491 ... A9WEV3 38299372
    847152 8k9e:C (3.33) BS01 JLQ ? GO:0005886 ... A9WEV4 38299372
    847153 8k9e:C (3.33) BS02 JM9 ? GO:0005886 ... A9WEV4 38299372
    847154 8k9e:D (3.33) BS01 JM9 ? N/A A9WEV5 38299372
    847155 8k9e:E (3.33) BS01 HEC ? GO:0009055 ... A9WEV6 38299372
    847156 8k9e:E (3.33) BS02 HEC ? GO:0009055 ... A9WEV6 38299372
    847157 8k9e:F (3.33) BS01 JLQ ? N/A A9WEV7 38299372
    847158 8k9e:F (3.33) BS02 JL3 ? N/A A9WEV7 38299372
    847159 8k9e:F (3.33) BS03 JM9 ? N/A A9WEV7 38299372
    847160 8k9f:A (2.9) BS01 HEC ? N/A A9WEV2 38299372
    847161 8k9f:A (2.9) BS02 HEC ? N/A A9WEV2 38299372
    847162 8k9f:A (2.9) BS03 HEC ? N/A A9WEV2 38299372
    847163 8k9f:A (2.9) BS04 HEC ? N/A A9WEV2 38299372
    847164 8k9f:A (2.9) BS05 HEC ? N/A A9WEV2 38299372
    847165 8k9f:B (2.9) BS01 HEC ? GO:0016491 ... A9WEV3 38299372
    847166 8k9f:B (2.9) BS02 HEC ? GO:0016491 ... A9WEV3 38299372
    847167 8k9f:B (2.9) BS03 SF4 ? GO:0016491 ... A9WEV3 38299372
    847168 8k9f:B (2.9) BS04 SF4 ? GO:0016491 ... A9WEV3 38299372
    847169 8k9f:B (2.9) BS05 SF4 ? GO:0016491 ... A9WEV3 38299372
    847170 8k9f:B (2.9) BS06 F3S ? GO:0016491 ... A9WEV3 38299372
    847171 8k9f:B (2.9) BS07 MG ? GO:0016491 ... A9WEV3 38299372
    847172 8k9f:C (2.9) BS01 HEC ? GO:0005886 ... A9WEV4 38299372
    847173 8k9f:C (2.9) BS02 JLQ ? GO:0005886 ... A9WEV4 38299372
    847174 8k9f:C (2.9) BS03 JL3 ? GO:0005886 ... A9WEV4 38299372
    847175 8k9f:C (2.9) BS04 JM9 ? GO:0005886 ... A9WEV4 38299372
    847176 8k9f:D (2.9) BS01 JM9 ? N/A A9WEV5 38299372
    847177 8k9f:E (2.9) BS01 HEC ? GO:0009055 ... A9WEV6 38299372
    847178 8k9f:E (2.9) BS02 HEC ? GO:0009055 ... A9WEV6 38299372
    847179 8k9f:E (2.9) BS03 HEC ? GO:0009055 ... A9WEV6 38299372
    847180 8k9f:F (2.9) BS01 JLQ ? N/A A9WEV7 38299372
    847181 8k9f:F (2.9) BS02 JL3 ? N/A A9WEV7 38299372
    847182 8k9f:F (2.9) BS03 JM9 ? N/A A9WEV7 38299372
    847183 8k9g:A (3.49) BS01 dna ? GO:0003676 ... A0A1I7NFD7 37783228
    847184 8k9g:A (3.49) BS02 rna ? GO:0003676 ... A0A1I7NFD7 37783228
    847185 8k9g:B (3.49) BS01 dna ? GO:0007165 ... A0A1I7NFG5 37783228
    847186 8k9g:B (3.49) BS02 rna ? GO:0007165 ... A0A1I7NFG5 37783228
    847187 8k9g:E (3.49) BS01 dna ? GO:0003676 ... A0A1I7NFD7 37783228
    847188 8k9g:E (3.49) BS02 rna ? GO:0003676 ... A0A1I7NFD7 37783228
    847189 8k9g:F (3.49) BS01 dna ? GO:0007165 ... A0A1I7NFG5 37783228
    847190 8k9g:F (3.49) BS02 rna ? GO:0007165 ... A0A1I7NFG5 37783228
    847191 8k9k:R (2.98) BS01 peptide ? GO:0004930 ... P0ABE7
    P35372
    38740791
    847192 8k9l:R (3.05) BS01 peptide ? GO:0004930 ... P0ABE7
    P35372
    38740791
    847193 8k9l:R (3.05) BS02 VV9 ? GO:0004930 ... P0ABE7
    P35372
    38740791
    847194 8k9n:A (0.86) BS01 CU ? GO:0005507 ... P04377 38232298
    847195 8k9p:A (1.5) BS01 CU ? GO:0042597 ... P04377 38232298
    847196 8k9q:A (2.84) BS01 Y01 3.1.-.- GO:0005783 ... G0S652 38167496
    847197 8k9q:A (2.84) BS02 Y01 3.1.-.- GO:0005783 ... G0S652 38167496
    847198 8k9q:A (2.84) BS03 Y01 3.1.-.- GO:0005783 ... G0S652 38167496
    847199 8k9q:A (2.84) BS04 D39 3.1.-.- GO:0005783 ... G0S652 38167496
    847200 8k9q:A (2.84) BS05 D39 3.1.-.- GO:0005783 ... G0S652 38167496

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).