SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    847001 8onz:LR (2.94) BS01 rna ? GO:0003735 ... G0S9T3 38267453
    847002 8onz:LX (2.94) BS01 rna ? GO:0003735 ... G0S507 38267453
    847003 8onz:LX (2.94) BS02 rna ? GO:0003735 ... G0S507 38267453
    847004 8onz:LY (2.94) BS01 rna ? GO:0003723 ... G0RYN9 38267453
    847005 8onz:LY (2.94) BS02 rna ? GO:0003723 ... G0RYN9 38267453
    847006 8onz:Lh (2.94) BS01 rna 2.4.99.18 GO:0003735 ... G0S0D7 38267453
    847007 8onz:Lk (2.94) BS01 rna ? GO:0003735 ... G0SG89 38267453
    847008 8oo0:A (3.1) BS01 rna ? GO:0006417 ... G0S9U0 38267453
    847009 8oo0:B (3.1) BS01 rna ? GO:0003676 ... G0S428 38267453
    847010 8oo0:C (3.1) BS01 rna 3.6.4.10 GO:0005524 ... G0SCU5 38267453
    847011 8oo0:D (3.1) BS01 rna 3.4.11.18 GO:0006508 ... G0SEA9 38267453
    847012 8oo0:LA (3.1) BS01 rna ? GO:0002181 ... G0S4P8 38267453
    847013 8oo0:LB (3.1) BS01 rna ? GO:0003723 ... G0RXW1 38267453
    847014 8oo0:LC (3.1) BS01 rna ? GO:0003735 ... G0SFC3 38267453
    847015 8oo0:LC (3.1) BS02 rna ? GO:0003735 ... G0SFC3 38267453
    847016 8oo0:LD (3.1) BS01 rna ? GO:0000027 ... G0SEG2 38267453
    847017 8oo0:LD (3.1) BS02 rna ? GO:0000027 ... G0SEG2 38267453
    847018 8oo0:LE (3.1) BS01 rna ? GO:0000027 ... G0S0D6 38267453
    847019 8oo0:LF (3.1) BS01 rna ? GO:0000463 ... G0SFL0 38267453
    847020 8oo0:LG (3.1) BS01 rna ? GO:0003723 ... G0SAJ9 38267453
    847021 8oo0:LG (3.1) BS02 rna ? GO:0003723 ... G0SAJ9 38267453
    847022 8oo0:LH (3.1) BS01 rna ? GO:0003735 ... G0S0E5 38267453
    847023 8oo0:LI (3.1) BS01 rna ? GO:0003735 ... G0SEI1 38267453
    847024 8oo0:LI (3.1) BS02 rna ? GO:0003735 ... G0SEI1 38267453
    847025 8oo0:LJ (3.1) BS01 rna ? GO:0003735 ... G0SHQ2 38267453
    847026 8oo0:LJ (3.1) BS02 rna ? GO:0003735 ... G0SHQ2 38267453
    847027 8oo0:LK (3.1) BS01 rna ? GO:0003735 ... G0SGH8 38267453
    847028 8oo0:LL (3.1) BS01 rna ? GO:0003723 ... G0S992 38267453
    847029 8oo0:LM (3.1) BS01 rna ? GO:0003723 ... G0S1R0 38267453
    847030 8oo0:LN (3.1) BS01 rna ? GO:0002181 ... G0RZ88 38267453
    847031 8oo0:LN (3.1) BS02 rna ? GO:0002181 ... G0RZ88 38267453
    847032 8oo0:LO (3.1) BS01 rna ? GO:0003729 ... G0SH61 38267453
    847033 8oo0:LP (3.1) BS01 rna ? GO:0002181 ... G0SGY1 38267453
    847034 8oo0:LP (3.1) BS02 rna ? GO:0002181 ... G0SGY1 38267453
    847035 8oo0:LQ (3.1) BS01 rna ? GO:0003723 ... G0S9B5 38267453
    847036 8oo0:LR (3.1) BS01 rna ? GO:0003723 ... G0S9T3 38267453
    847037 8oo0:LR (3.1) BS02 rna ? GO:0003723 ... G0S9T3 38267453
    847038 8oo0:LS (3.1) BS01 rna ? GO:0003735 ... G0SCE2 38267453
    847039 8oo0:LS (3.1) BS02 rna ? GO:0003735 ... G0SCE2 38267453
    847040 8oo0:LT (3.1) BS01 rna ? GO:0003735 ... G0S0Z3 38267453
    847041 8oo0:LT (3.1) BS02 rna ? GO:0003735 ... G0S0Z3 38267453
    847042 8oo0:LU (3.1) BS01 rna ? GO:0002181 ... G0SDS8 38267453
    847043 8oo0:LV (3.1) BS01 rna ? GO:0003735 ... G0SI44 38267453
    847044 8oo0:LW (3.1) BS01 rna ? GO:0003735 ... G0S1P9 38267453
    847045 8oo0:LW (3.1) BS02 rna ? GO:0003735 ... G0S1P9 38267453
    847046 8oo0:LX (3.1) BS01 rna ? GO:0003735 ... G0S507 38267453
    847047 8oo0:LX (3.1) BS02 rna ? GO:0003735 ... G0S507 38267453
    847048 8oo0:LY (3.1) BS01 rna ? GO:0003723 ... G0RYN9 38267453
    847049 8oo0:LY (3.1) BS02 rna ? GO:0003723 ... G0RYN9 38267453
    847050 8oo0:LZ (3.1) BS01 rna ? GO:0003735 ... G0RZE9 38267453
    847051 8oo0:La (3.1) BS01 rna ? GO:0003735 ... G0SGT6 38267453
    847052 8oo0:Lb (3.1) BS01 rna ? GO:0002181 ... Q2H9W4 38267453
    847053 8oo0:Lc (3.1) BS01 rna ? GO:0003723 ... G0SEI0 38267453
    847054 8oo0:Ld (3.1) BS01 rna ? GO:0002181 ... G0SD68 38267453
    847055 8oo0:Le (3.1) BS01 rna ? GO:0003735 ... G0S6V4 38267453
    847056 8oo0:Lf (3.1) BS01 rna ? GO:0003735 ... G0SCL3 38267453
    847057 8oo0:Lg (3.1) BS01 rna ? GO:0003735 ... G0SFN0 38267453
    847058 8oo0:Lg (3.1) BS02 ZN ? GO:0003735 ... G0SFN0 38267453
    847059 8oo0:Lh (3.1) BS01 rna 2.4.99.18 GO:0000463 ... G0S0D7 38267453
    847060 8oo0:Lh (3.1) BS02 rna 2.4.99.18 GO:0000463 ... G0S0D7 38267453
    847061 8oo0:Li (3.1) BS01 rna ? GO:0003735 ... G0SBN1 38267453
    847062 8oo0:Lj (3.1) BS01 rna ? GO:0003723 ... G0S101 38267453
    847063 8oo0:Lj (3.1) BS02 rna ? GO:0003723 ... G0S101 38267453
    847064 8oo0:Lj (3.1) BS03 ZN ? GO:0003723 ... G0S101 38267453
    847065 8oo0:Lk (3.1) BS01 rna ? GO:0003735 ... G0SG89 38267453
    847066 8oo0:Ll (3.1) BS01 rna ? GO:0003735 ... Q2H9R2 38267453
    847067 8oo0:Ll (3.1) BS02 rna ? GO:0003735 ... Q2H9R2 38267453
    847068 8oo0:Lm (3.1) BS01 rna ? GO:0003735 ... G0S8G4 38267453
    847069 8oo0:Lm (3.1) BS02 ZN ? GO:0003735 ... G0S8G4 38267453
    847070 8oo0:Lo (3.1) BS01 rna ? GO:0003735 ... G0SBZ6 38267453
    847071 8oo0:Lo (3.1) BS02 ZN ? GO:0003735 ... G0SBZ6 38267453
    847072 8oo0:Lp (3.1) BS01 rna ? GO:0003735 ... G0S6B0 38267453
    847073 8oo0:Lp (3.1) BS02 ZN ? GO:0003735 ... G0S6B0 38267453
    847074 8oo0:Lq (3.1) BS01 rna ? GO:0003735 ... G0SHJ6 38267453
    847075 8oo0:Ls (3.1) BS01 rna ? GO:0000027 ... G0SGP3 38267453
    847076 8oo0:SA (3.1) BS01 rna ? GO:0000028 ... G0RYF9 38267453
    847077 8oo0:SB (3.1) BS01 rna ? GO:0003735 ... G0S7T8 38267453
    847078 8oo0:SC (3.1) BS01 rna ? GO:0003723 ... G0SAV4 38267453
    847079 8oo0:SD (3.1) BS01 rna ? GO:0003723 ... G0S6I7 38267453
    847080 8oo0:SE (3.1) BS01 rna ? GO:0003723 ... G0S1A6 38267453
    847081 8oo0:SF (3.1) BS01 rna ? GO:0003723 ... G0S1Z0 38267453
    847082 8oo0:SG (3.1) BS01 rna ? GO:0003735 ... G0RY43 38267453
    847083 8oo0:SH (3.1) BS01 rna ? GO:0003735 ... G0S8C4 38267453
    847084 8oo0:SI (3.1) BS01 rna ? GO:0003735 ... G0RY45 38267453
    847085 8oo0:SI (3.1) BS02 rna ? GO:0003735 ... G0RY45 38267453
    847086 8oo0:SJ (3.1) BS01 rna ? GO:0003723 ... G0S0Z4 38267453
    847087 8oo0:SK (3.1) BS01 rna ? GO:0003723 ... G0RZD8 38267453
    847088 8oo0:SL (3.1) BS01 rna ? GO:0003735 ... G0SF00 38267453
    847089 8oo0:SM (3.1) BS01 rna ? GO:0003735 ... G0SHH9 38267453
    847090 8oo0:SN (3.1) BS01 rna ? GO:0003735 ... G0RZM9 38267453
    847091 8oo0:SO (3.1) BS01 rna ? GO:0003735 ... G0SFL1 38267453
    847092 8oo0:SP (3.1) BS01 rna ? GO:0000028 ... G0S084 38267453
    847093 8oo0:SQ (3.1) BS01 rna ? GO:0000462 ... G0SBR7 38267453
    847094 8oo0:SR (3.1) BS01 rna ? GO:0003735 ... G0S871 38267453
    847095 8oo0:SS (3.1) BS01 rna ? GO:0003676 ... G0S6J7 38267453
    847096 8oo0:ST (3.1) BS01 rna ? GO:0000028 ... G0SFK8 38267453
    847097 8oo0:SU (3.1) BS01 rna ? GO:0003723 ... G0S379 38267453
    847098 8oo0:SW (3.1) BS01 rna ? GO:0003735 ... G0SHI0 38267453
    847099 8oo0:SX (3.1) BS01 rna ? GO:0003735 ... G0RY17 38267453
    847100 8oo0:SY (3.1) BS01 rna ? GO:0003735 ... P0CU28 38267453
    847101 8oo0:SZ (3.1) BS01 rna ? GO:0005840 ... G0S1Y9 38267453
    847102 8oo0:Sa (3.1) BS01 rna ? GO:0003729 ... G0S2X4 38267453
    847103 8oo0:Sa (3.1) BS02 ZN ? GO:0003729 ... G0S2X4 38267453
    847104 8oo0:Sb (3.1) BS01 rna ? GO:0003735 ... G0S1S4 38267453
    847105 8oo0:Sb (3.1) BS02 ZN ? GO:0003735 ... G0S1S4 38267453
    847106 8oo0:Sc (3.1) BS01 rna ? GO:0000028 ... G0S9M9 38267453
    847107 8oo0:Sd (3.1) BS01 rna ? GO:0002181 ... Q2HB68 38267453
    847108 8oo0:Sd (3.1) BS02 ZN ? GO:0002181 ... Q2HB68 38267453
    847109 8oo0:Se (3.1) BS01 rna ? GO:0003735 ... Q2H4C5 38267453
    847110 8oo0:Sf (3.1) BS01 rna ? GO:0003735 ... G0S2X5 38267453
    847111 8oo1:A (3.7) BS01 URA ? GO:0005886 ... P0AGM7 39209842
    847112 8oo1:A (3.7) BS02 DMU ? GO:0005886 ... P0AGM7 39209842
    847113 8oo1:A (3.7) BS03 DMU ? GO:0005886 ... P0AGM7 39209842
    847114 8oo1:C (3.7) BS01 DMU ? GO:0005886 ... P0AGM7 39209842
    847115 8oo1:C (3.7) BS02 URA ? GO:0005886 ... P0AGM7 39209842
    847116 8oo1:C (3.7) BS03 DMU ? GO:0005886 ... P0AGM7 39209842
    847117 8oo2:A (1.85) BS01 AV8 ? GO:0000976 ... V9XTV0 37466921
    847118 8oo2:B (1.85) BS01 AV8 ? GO:0000976 ... V9XTV0 37466921
    847119 8oo5:P (2.25) BS01 VUF 2.7.11.1 GO:0016567 ... Q9Y4B6 N/A
    847120 8oo5:P (2.25) BS02 VUF 2.7.11.1 GO:0016567 ... Q9Y4B6 N/A
    847121 8oo6:A (4.3) BS01 dna 2.7.7.7 GO:0003676 ... P00582 37620586
    847122 8oo6:A (4.3) BS02 dna 2.7.7.7 GO:0003676 ... P00582 37620586
    847123 8oo6:A (4.3) BS03 dna 2.7.7.7 GO:0003676 ... P00582 37620586
    847124 8oo7:A (2.8) BS01 ADP 3.6.4.12 GO:0004386 ... G0RYI5 37384673
    847125 8oo7:B (2.8) BS01 ADP 3.6.4.12 GO:0004386 ... G0RYI5 37384673
    847126 8oo7:C (2.8) BS01 ADP 3.6.4.12 GO:0004386 ... G0RYI5 37384673
    847127 8oo7:D (2.8) BS01 ADP 3.6.4.12 GO:0004386 ... G0RYC2 37384673
    847128 8oo7:E (2.8) BS01 ADP 3.6.4.12 GO:0004386 ... G0RYC2 37384673
    847129 8oo7:F (2.8) BS01 ADP 3.6.4.12 GO:0004386 ... G0RYC2 37384673
    847130 8oo7:G (2.8) BS01 dna N/A GO:0003677 ... N/A 37384673
    847131 8oo7:G (2.8) BS02 dna N/A GO:0003677 ... N/A 37384673
    847132 8oo7:G (2.8) BS03 ALF N/A GO:0003677 ... N/A 37384673
    847133 8oo7:G (2.8) BS04 ADP N/A GO:0003677 ... N/A 37384673
    847134 8oo7:J (2.8) BS01 dna ? N/A G0S589 37384673
    847135 8oo7:J (2.8) BS02 dna ? N/A G0S589 37384673
    847136 8oo7:J (2.8) BS03 ATP ? N/A G0S589 37384673
    847137 8oo7:M (2.8) BS01 dna ? GO:0000786 ... P68431 37384673
    847138 8oo7:M (2.8) BS02 dna ? GO:0000786 ... P68431 37384673
    847139 8oo7:N (2.8) BS01 dna ? GO:0000781 ... P62805 37384673
    847140 8oo7:N (2.8) BS02 dna ? GO:0000781 ... P62805 37384673
    847141 8oo7:O (2.8) BS01 dna ? GO:0000786 ... Q93077 37384673
    847142 8oo7:O (2.8) BS02 dna ? GO:0000786 ... Q93077 37384673
    847143 8oo7:P (2.8) BS01 dna ? GO:0000786 ... P62807 37384673
    847144 8oo7:P (2.8) BS02 dna ? GO:0000786 ... P62807 37384673
    847145 8oo7:Q (2.8) BS01 dna ? GO:0000786 ... P68431 37384673
    847146 8oo7:Q (2.8) BS02 dna ? GO:0000786 ... P68431 37384673
    847147 8oo7:R (2.8) BS01 dna ? GO:0000781 ... P62805 37384673
    847148 8oo7:R (2.8) BS02 dna ? GO:0000781 ... P62805 37384673
    847149 8oo8:A (1.4) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 39688904
    847150 8oo8:A (1.4) BS02 VV8 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 39688904
    847151 8oo9:G (3.2) BS01 dna N/A GO:0003677 ... N/A 37384673
    847152 8oo9:G (3.2) BS02 dna N/A GO:0003677 ... N/A 37384673
    847153 8oo9:G (3.2) BS03 ADP N/A GO:0003677 ... N/A 37384673
    847154 8oo9:G (3.2) BS04 ALF N/A GO:0003677 ... N/A 37384673
    847155 8ooa:M (3.18) BS01 dna ? GO:0000786 ... P68431 37384673
    847156 8ooa:M (3.18) BS02 dna ? GO:0000786 ... P68431 37384673
    847157 8ooa:N (3.18) BS01 dna ? GO:0000781 ... P62805 37384673
    847158 8ooa:N (3.18) BS02 dna ? GO:0000781 ... P62805 37384673
    847159 8ooa:O (3.18) BS01 dna ? GO:0000786 ... Q93077 37384673
    847160 8ooa:O (3.18) BS02 dna ? GO:0000786 ... Q93077 37384673
    847161 8ooa:P (3.18) BS01 dna ? GO:0000786 ... P62807 37384673
    847162 8ooa:P (3.18) BS02 dna ? GO:0000786 ... P62807 37384673
    847163 8ooa:Q (3.18) BS01 dna ? GO:0000786 ... P68431 37384673
    847164 8ooa:Q (3.18) BS02 dna ? GO:0000786 ... P68431 37384673
    847165 8ooa:R (3.18) BS01 dna ? GO:0000781 ... P62805 37384673
    847166 8ooa:R (3.18) BS02 dna ? GO:0000781 ... P62805 37384673
    847167 8ooc:A (2.93) BS01 ADP 3.6.4.12 GO:0004386 ... G0RYI5 37384673
    847168 8ooc:B (2.93) BS01 ADP 3.6.4.12 GO:0004386 ... G0RYI5 37384673
    847169 8ooc:C (2.93) BS01 ADP 3.6.4.12 GO:0004386 ... G0RYI5 37384673
    847170 8ooc:D (2.93) BS01 ADP 3.6.4.12 GO:0004386 ... G0RYC2 37384673
    847171 8ooc:E (2.93) BS01 ADP 3.6.4.12 GO:0004386 ... G0RYC2 37384673
    847172 8ooc:F (2.93) BS01 ADP 3.6.4.12 GO:0004386 ... G0RYC2 37384673
    847173 8ooc:J (2.93) BS01 ATP ? N/A G0S589 37384673
    847174 8ood:A (1.497) BS01 MG 2.7.11.1 GO:0016567 ... Q9Y4B6 N/A
    847175 8ood:A (1.497) BS02 VY3 2.7.11.1 GO:0016567 ... Q9Y4B6 N/A
    847176 8ood:A (1.497) BS03 VY3 2.7.11.1 GO:0016567 ... Q9Y4B6 N/A
    847177 8oof:J (2.9) BS01 ATP ? N/A G0S589 37384673
    847178 8oog:A (1.384) BS01 SAM 2.5.1.6 GO:0004478 ... P31153 37389247
    847179 8oog:A (1.384) BS02 VUO 2.5.1.6 GO:0004478 ... P31153 37389247
    847180 8ooi:A (2.61) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 38326645
    847181 8ooi:A (2.61) BS02 ATP 3.6.4.6 GO:0000502 ... P55072 38326645
    847182 8ooi:A (2.61) BS03 MG 3.6.4.6 GO:0000502 ... P55072 38326645
    847183 8ooi:B (2.61) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 38326645
    847184 8ooi:B (2.61) BS02 ATP 3.6.4.6 GO:0000502 ... P55072 38326645
    847185 8ooi:B (2.61) BS03 MG 3.6.4.6 GO:0000502 ... P55072 38326645
    847186 8ooi:C (2.61) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 38326645
    847187 8ooi:C (2.61) BS02 ATP 3.6.4.6 GO:0000502 ... P55072 38326645
    847188 8ooi:C (2.61) BS03 MG 3.6.4.6 GO:0000502 ... P55072 38326645
    847189 8ooi:D (2.61) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 38326645
    847190 8ooi:D (2.61) BS02 ATP 3.6.4.6 GO:0000502 ... P55072 38326645
    847191 8ooi:D (2.61) BS03 MG 3.6.4.6 GO:0000502 ... P55072 38326645
    847192 8ooi:E (2.61) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 38326645
    847193 8ooi:E (2.61) BS02 ATP 3.6.4.6 GO:0000502 ... P55072 38326645
    847194 8ooi:E (2.61) BS03 MG 3.6.4.6 GO:0000502 ... P55072 38326645
    847195 8ooi:F (2.61) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 38326645
    847196 8ooi:F (2.61) BS02 ATP 3.6.4.6 GO:0000502 ... P55072 38326645
    847197 8ooi:F (2.61) BS03 MG 3.6.4.6 GO:0000502 ... P55072 38326645
    847198 8ooj:A (2.1) BS01 UDP 2.7.1.113
    2.7.1.74
    2.7.1.76
    GO:0004136 ... P27707 38064712
    847199 8ooj:A (2.1) BS02 VVC 2.7.1.113
    2.7.1.74
    2.7.1.76
    GO:0004136 ... P27707 38064712
    847200 8ooj:B (2.1) BS01 UDP 2.7.1.113
    2.7.1.74
    2.7.1.76
    GO:0004136 ... P27707 38064712

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).