SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    847201 8k9r:A (2.68) BS01 peptide 3.1.-.- GO:0005783 ... G0S652 38167496
    847202 8k9r:A (2.68) BS02 MAN 3.1.-.- GO:0005783 ... G0S652 38167496
    847203 8k9r:A (2.68) BS03 05E 3.1.-.- GO:0005783 ... G0S652 38167496
    847204 8k9r:A (2.68) BS04 PA1 3.1.-.- GO:0005783 ... G0S652 38167496
    847205 8k9r:A (2.68) BS05 L9H 3.1.-.- GO:0005783 ... G0S652 38167496
    847206 8k9r:A (2.68) BS06 CLR 3.1.-.- GO:0005783 ... G0S652 38167496
    847207 8k9r:A (2.68) BS07 80Y 3.1.-.- GO:0005783 ... G0S652 38167496
    847208 8k9s:A (2.35) BS01 LYS N/A GO:0000166 ... A0A024X378 38890421
    847209 8k9s:A (2.35) BS02 JRU N/A GO:0000166 ... A0A024X378 38890421
    847210 8k9s:B (2.35) BS01 LYS N/A GO:0000166 ... A0A024X378 38890421
    847211 8k9s:B (2.35) BS02 JRU N/A GO:0000166 ... A0A024X378 38890421
    847212 8k9t:A (2.66) BS01 peptide 3.1.-.- GO:0005783 ... G0S652 38167496
    847213 8k9t:A (2.66) BS02 MAN 3.1.-.- GO:0005783 ... G0S652 38167496
    847214 8k9t:A (2.66) BS03 05E 3.1.-.- GO:0005783 ... G0S652 38167496
    847215 8k9t:A (2.66) BS04 PA1 3.1.-.- GO:0005783 ... G0S652 38167496
    847216 8k9t:A (2.66) BS05 LYI 3.1.-.- GO:0005783 ... G0S652 38167496
    847217 8k9t:A (2.66) BS06 CLR 3.1.-.- GO:0005783 ... G0S652 38167496
    847218 8k9t:A (2.66) BS07 CLR 3.1.-.- GO:0005783 ... G0S652 38167496
    847219 8k9t:A (2.66) BS08 80Y 3.1.-.- GO:0005783 ... G0S652 38167496
    847220 8k9u:A (2.83) BS01 LYS N/A GO:0000166 ... A0A024X378 38890421
    847221 8k9u:A (2.83) BS02 JSL N/A GO:0000166 ... A0A024X378 38890421
    847222 8k9u:B (2.83) BS01 LYS N/A GO:0000166 ... A0A024X378 38890421
    847223 8k9u:B (2.83) BS02 JSL N/A GO:0000166 ... A0A024X378 38890421
    847224 8k9v:A (1.92) BS01 LYS N/A GO:0000166 ... A0A024X378 38890421
    847225 8k9v:A (1.92) BS02 JT4 N/A GO:0000166 ... A0A024X378 38890421
    847226 8k9v:B (1.92) BS01 LYS N/A GO:0000166 ... A0A024X378 38890421
    847227 8k9v:B (1.92) BS02 JT4 N/A GO:0000166 ... A0A024X378 38890421
    847228 8k9w:A (2.3) BS01 JTR N/A GO:0000166 ... A0A024X378 38890421
    847229 8k9w:B (2.3) BS01 JTR N/A GO:0000166 ... A0A024X378 38890421
    847230 8k9x:A (2.35) BS01 JUA N/A GO:0000166 ... A0A024X378 38890421
    847231 8k9x:B (2.35) BS01 JUA N/A GO:0000166 ... A0A024X378 38890421
    847232 8k9y:A (1.82) BS01 A3P 2.8.2.24 GO:0005737 ... Q9C9D0 37586213
    847233 8k9y:B (1.82) BS01 A3P 2.8.2.24 GO:0005737 ... Q9C9D0 37586213
    847234 8k9z:B (2.9) BS01 CA N/A GO:0000922 ... P0DP24 39043696
    847235 8k9z:B (2.9) BS02 CA N/A GO:0000922 ... P0DP24 39043696
    847236 8k9z:B (2.9) BS03 CA N/A GO:0000922 ... P0DP24 39043696
    847237 8k9z:B (2.9) BS04 CA N/A GO:0000922 ... P0DP24 39043696
    847238 8k9z:D (2.9) BS01 CA N/A GO:0000922 ... P0DP24 39043696
    847239 8k9z:D (2.9) BS02 CA N/A GO:0000922 ... P0DP24 39043696
    847240 8k9z:D (2.9) BS03 CA N/A GO:0000922 ... P0DP24 39043696
    847241 8k9z:D (2.9) BS04 CA N/A GO:0000922 ... P0DP24 39043696
    847242 8ka0:A (2.35) BS01 NAD N/A N/A A0A2S3R7M0 39043696
    847243 8ka0:B (2.35) BS01 CA N/A GO:0000922 ... P0DP24 39043696
    847244 8ka0:B (2.35) BS02 CA N/A GO:0000922 ... P0DP24 39043696
    847245 8ka0:C (2.35) BS01 NAD N/A N/A A0A2S3R7M0 39043696
    847246 8ka0:D (2.35) BS01 CA N/A GO:0000922 ... P0DP24 39043696
    847247 8ka0:D (2.35) BS02 CA N/A GO:0000922 ... P0DP24 39043696
    847248 8ka0:E (2.35) BS01 NAD N/A N/A A0A2S3R7M0 39043696
    847249 8ka0:F (2.35) BS01 CA N/A GO:0000922 ... P0DP24 39043696
    847250 8ka0:F (2.35) BS02 CA N/A GO:0000922 ... P0DP24 39043696
    847251 8ka0:G (2.35) BS01 NAD N/A N/A A0A2S3R7M0 39043696
    847252 8ka0:H (2.35) BS01 CA N/A GO:0000922 ... P0DP24 39043696
    847253 8ka0:H (2.35) BS02 CA N/A GO:0000922 ... P0DP24 39043696
    847254 8ka1:F (2.82) BS01 MG N/A GO:0000922 ... P0DP24 39043696
    847255 8ka1:F (2.82) BS02 MG N/A GO:0000922 ... P0DP24 39043696
    847256 8ka1:F (2.82) BS03 MG N/A GO:0000922 ... P0DP24 39043696
    847257 8ka3:A (3.0) BS01 dna 3.1.11.2 GO:0003677 ... P45951 38503293
    847258 8ka3:A (3.0) BS02 dna 3.1.11.2 GO:0003677 ... P45951 38503293
    847259 8ka3:A (3.0) BS03 dna 3.1.11.2 GO:0003677 ... P45951 38503293
    847260 8ka3:A (3.0) BS04 3DR 3.1.11.2 GO:0003677 ... P45951 38503293
    847261 8ka4:B (2.3) BS01 DG 3.1.11.2 GO:0003677 ... P45951 38503293
    847262 8ka4:C (2.3) BS01 DG 3.1.11.2 GO:0003677 ... P45951 38503293
    847263 8ka5:A (2.8) BS01 dna 3.1.11.2 GO:0003677 ... P45951 38503293
    847264 8ka5:A (2.8) BS02 dna 3.1.11.2 GO:0003677 ... P45951 38503293
    847265 8ka5:A (2.8) BS03 dna 3.1.11.2 GO:0003677 ... P45951 38503293
    847266 8ka5:A (2.8) BS04 3DR 3.1.11.2 GO:0003677 ... P45951 38503293
    847267 8ka8:A (2.96) BS01 ZN 3.4.-.-
    3.4.17.23
    GO:0006508 ... A0A1U7QTA1 38305152
    847268 8kab:C (3.3) BS01 rna N/A GO:0002181 ... A0QSD4 39029461
    847269 8kab:D (3.3) BS01 rna N/A GO:0003735 ... A0QSD1 39029461
    847270 8kab:E (3.3) BS01 rna N/A GO:0003735 ... A0QSD2 39029461
    847271 8kab:F (3.3) BS01 rna N/A GO:0000049 ... A0QSG1 39029461
    847272 8kab:F (3.3) BS02 rna N/A GO:0000049 ... A0QSG1 39029461
    847273 8kab:G (3.3) BS01 rna N/A GO:0002181 ... A0QSG4 39029461
    847274 8kab:H (3.3) BS01 rna N/A GO:0003735 ... A0R7F6 39029461
    847275 8kab:I (3.3) BS01 rna N/A GO:0003735 ... A0QS62 39029461
    847276 8kab:J (3.3) BS01 rna N/A GO:0003735 ... A0QS45 39029461
    847277 8kab:K (3.3) BS01 rna N/A GO:0003729 ... A0QSP8 39029461
    847278 8kab:L (3.3) BS01 rna N/A GO:0003735 ... A0QSF9 39029461
    847279 8kab:M (3.3) BS01 rna N/A GO:0003735 ... A0QSG8 39029461
    847280 8kab:N (3.3) BS01 rna N/A GO:0003735 ... A0QSD8 39029461
    847281 8kab:O (3.3) BS01 rna N/A GO:0003735 ... A0QSL9 39029461
    847282 8kab:P (3.3) BS01 rna N/A GO:0003735 ... A0QSG5 39029461
    847283 8kab:P (3.3) BS02 rna N/A GO:0003735 ... A0QSG5 39029461
    847284 8kab:Q (3.3) BS01 rna N/A GO:0003735 ... A0QV42 39029461
    847285 8kab:R (3.3) BS01 rna N/A GO:0000027 ... A0QYU6 39029461
    847286 8kab:S (3.3) BS01 rna N/A GO:0003723 ... A0R151 39029461
    847287 8kab:T (3.3) BS01 rna N/A GO:0003735 ... A0QSD6 39029461
    847288 8kab:U (3.3) BS01 rna N/A GO:0003735 ... A0QSD3 39029461
    847289 8kab:V (3.3) BS01 rna N/A GO:0003723 ... A0QSG0 39029461
    847290 8kab:W (3.3) BS01 rna N/A GO:0003723 ... A0R3D2 39029461
    847291 8kab:X (3.3) BS01 rna N/A GO:0003735 ... A0R150 39029461
    847292 8kab:Y (3.3) BS01 rna N/A GO:0003735 ... A0QV03 39029461
    847293 8kab:Z (3.3) BS01 rna N/A GO:0003735 ... A0QSD9 39029461
    847294 8kab:a (3.3) BS01 rna N/A GO:0003735 ... A0QSG7 39029461
    847295 8kab:a (3.3) BS02 rna N/A GO:0003735 ... A0QSG7 39029461
    847296 8kab:b (3.3) BS01 rna N/A GO:0003735 ... A0R3I9 39029461
    847297 8kab:c (3.3) BS01 rna N/A GO:0003735 ... A0QS39 39029461
    847298 8kab:d (3.3) BS01 rna N/A GO:0003735 ... A0R7K0 39029461
    847299 8kab:e (3.3) BS01 rna N/A GO:0003735 ... A0QYU7 39029461
    847300 8kab:f (3.3) BS01 rna N/A GO:0003735 ... A0QSL4 39029461
    847301 8kab:g (3.3) BS01 rna N/A GO:0003735 ... A0R215 39029461
    847302 8kab:h (3.3) BS01 rna N/A GO:0003924 ... A0QVY1 39029461
    847303 8kab:h (3.3) BS02 GNP N/A GO:0003924 ... A0QVY1 39029461
    847304 8kae:R (3.18) BS01 YUX ? GO:0002920 ... Q8IVW8 38123825
    847305 8kag:B (3.88) BS01 rna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    847306 8kag:B (3.88) BS02 rna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    847307 8kah:B (3.36) BS01 rna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    847308 8kah:B (3.36) BS02 dna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    847309 8kah:B (3.36) BS03 dna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    847310 8kah:B (3.36) BS04 rna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    847311 8kah:F (3.36) BS01 rna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    847312 8kah:F (3.36) BS02 dna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    847313 8kah:F (3.36) BS03 dna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    847314 8kah:F (3.36) BS04 rna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    847315 8kai:B (3.49) BS01 rna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    847316 8kai:B (3.49) BS02 dna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    847317 8kai:B (3.49) BS03 dna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    847318 8kai:B (3.49) BS04 rna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    847319 8kai:F (3.49) BS01 rna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    847320 8kai:F (3.49) BS02 dna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    847321 8kai:F (3.49) BS03 dna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    847322 8kai:F (3.49) BS04 rna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    847323 8kaj:B (3.42) BS01 rna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    847324 8kaj:B (3.42) BS02 dna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    847325 8kaj:B (3.42) BS03 dna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    847326 8kaj:B (3.42) BS04 rna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    847327 8kaj:F (3.42) BS01 rna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    847328 8kaj:F (3.42) BS02 dna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    847329 8kaj:F (3.42) BS03 dna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    847330 8kaj:F (3.42) BS04 rna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    847331 8kak:B (3.6) BS01 rna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    847332 8kak:B (3.6) BS02 dna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    847333 8kak:B (3.6) BS03 dna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    847334 8kak:F (3.6) BS01 rna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    847335 8kak:F (3.6) BS02 dna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    847336 8kak:F (3.6) BS03 dna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    847337 8kal:B (3.16) BS01 rna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    847338 8kal:B (3.16) BS02 dna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    847339 8kal:B (3.16) BS03 dna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    847340 8kal:G (3.16) BS01 rna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    847341 8kal:G (3.16) BS02 dna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    847342 8kal:G (3.16) BS03 dna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    847343 8kam:B (3.91) BS01 rna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    847344 8kam:B (3.91) BS02 dna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    847345 8kam:B (3.91) BS03 dna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    847346 8kao:C (2.55) BS01 NAD N/A GO:0004352 ... Q97Y81 40705132
    847347 8kao:C (2.55) BS02 69O N/A GO:0004352 ... Q97Y81 40705132
    847348 8kaq:A () BS01 BGC N/A N/A N/A N/A
    847349 8kaq:A () BS02 BGC N/A N/A N/A N/A
    847350 8kaq:A () BS03 BGC N/A N/A N/A N/A
    847351 8kaq:A () BS04 GLC N/A N/A N/A N/A
    847352 8kaq:B () BS01 GLC N/A N/A N/A N/A
    847353 8kaq:B () BS02 BGC N/A N/A N/A N/A
    847354 8kaq:C () BS01 BGC N/A N/A N/A N/A
    847355 8kaq:C () BS02 BGC N/A N/A N/A N/A
    847356 8kaq:C () BS03 BGC N/A N/A N/A N/A
    847357 8kaq:C () BS04 GLC N/A N/A N/A N/A
    847358 8kaq:D () BS01 BGC N/A N/A N/A N/A
    847359 8kar:A (1.73) BS01 AKG N/A GO:0004352 ... Q97Y81 40705132
    847360 8kar:A (1.73) BS02 NAD N/A GO:0004352 ... Q97Y81 40705132
    847361 8kar:B (1.73) BS01 AKG N/A GO:0004352 ... Q97Y81 40705132
    847362 8kar:B (1.73) BS02 NAD N/A GO:0004352 ... Q97Y81 40705132
    847363 8kar:C (1.73) BS01 AKG N/A GO:0004352 ... Q97Y81 40705132
    847364 8kar:C (1.73) BS02 NAD N/A GO:0004352 ... Q97Y81 40705132
    847365 8kb0:A (2.48) BS01 peptide N/A N/A A0A2Z4U0A8 38636758
    847366 8kb0:D (2.48) BS01 peptide N/A N/A A0A2Z4U0A8 38636758
    847367 8kb1:A (2.46) BS01 peptide N/A N/A A0A2Z4U0D0 38636758
    847368 8kb3:A (1.62) BS01 MN N/A GO:0004784 ... P43019 N/A
    847369 8kb3:B (1.62) BS01 MN N/A GO:0004784 ... P43019 N/A
    847370 8kb5:A (2.26133) BS01 dna ? GO:0000776 ... P84243 37757444
    847371 8kb5:A (2.26133) BS02 dna ? GO:0000776 ... P84243 37757444
    847372 8kb5:B (2.26133) BS01 dna ? GO:0000781 ... P62805 37757444
    847373 8kb5:B (2.26133) BS02 dna ? GO:0000781 ... P62805 37757444
    847374 8kb5:C (2.26133) BS01 dna ? GO:0000786 ... P04908 37757444
    847375 8kb5:C (2.26133) BS02 dna ? GO:0000786 ... P04908 37757444
    847376 8kb5:D (2.26133) BS01 dna ? GO:0000786 ... P06899 37757444
    847377 8kb5:D (2.26133) BS02 dna ? GO:0000786 ... P06899 37757444
    847378 8kb5:E (2.26133) BS01 dna ? GO:0000776 ... P84243 37757444
    847379 8kb5:E (2.26133) BS02 dna ? GO:0000776 ... P84243 37757444
    847380 8kb5:F (2.26133) BS01 dna ? GO:0000781 ... P62805 37757444
    847381 8kb5:F (2.26133) BS02 dna ? GO:0000781 ... P62805 37757444
    847382 8kb5:G (2.26133) BS01 dna ? GO:0000786 ... P04908 37757444
    847383 8kb5:G (2.26133) BS02 dna ? GO:0000786 ... P04908 37757444
    847384 8kb5:H (2.26133) BS01 dna ? GO:0000786 ... P06899 37757444
    847385 8kb5:H (2.26133) BS02 dna ? GO:0000786 ... P06899 37757444
    847386 8kb7:A (2.8) BS01 UDP N/A GO:0001764 ... Q8NAT1 N/A
    847387 8kb7:A (2.8) BS02 MAN N/A GO:0001764 ... Q8NAT1 N/A
    847388 8kb7:B (2.8) BS01 UDP N/A GO:0001764 ... Q8NAT1 N/A
    847389 8kb7:B (2.8) BS02 MAN N/A GO:0001764 ... Q8NAT1 N/A
    847390 8kb7:C (2.8) BS01 UDP N/A GO:0001764 ... Q8NAT1 N/A
    847391 8kb7:C (2.8) BS02 MAN N/A GO:0001764 ... Q8NAT1 N/A
    847392 8kb7:D (2.8) BS01 UDP N/A GO:0001764 ... Q8NAT1 N/A
    847393 8kb7:D (2.8) BS02 MAN N/A GO:0001764 ... Q8NAT1 N/A
    847394 8kb8:C (2.49) BS01 MG N/A GO:0003924 ... P51149 39426373
    847395 8kb8:C (2.49) BS02 GTP N/A GO:0003924 ... P51149 39426373
    847396 8kb8:D (2.49) BS01 MG N/A GO:0003924 ... P51149 39426373
    847397 8kb8:D (2.49) BS02 GTP N/A GO:0003924 ... P51149 39426373
    847398 8kbc:A (2.8) BS01 rna N/A N/A P0DW61 39478223
    847399 8kbc:B (2.8) BS01 rna N/A N/A P0DW61 39478223
    847400 8kbc:C (2.8) BS01 rna N/A N/A P0DW61 39478223

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).