SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    847401 8kbc:D (2.8) BS01 rna N/A N/A P0DW61 39478223
    847402 8kbc:E (2.8) BS01 rna N/A N/A P0DW61 39478223
    847403 8kbc:F (2.8) BS01 rna N/A N/A P0DW61 39478223
    847404 8kbc:G (2.8) BS01 rna N/A N/A P0DW61 39478223
    847405 8kbc:H (2.8) BS01 rna N/A N/A P0DW61 39478223
    847406 8kbc:I (2.8) BS01 rna N/A N/A P0DW61 39478223
    847407 8kbc:J (2.8) BS01 rna N/A N/A P0DW61 39478223
    847408 8kbc:K (2.8) BS01 rna N/A N/A P0DW61 39478223
    847409 8kbc:L (2.8) BS01 rna N/A N/A P0DW61 39478223
    847410 8kbd:A (3.15) BS01 rna N/A N/A P0DW61 39478223
    847411 8kbd:B (3.15) BS01 rna N/A N/A P0DW61 39478223
    847412 8kbd:C (3.15) BS01 rna N/A N/A P0DW61 39478223
    847413 8kbd:D (3.15) BS01 rna N/A N/A P0DW61 39478223
    847414 8kbd:E (3.15) BS01 rna N/A N/A P0DW61 39478223
    847415 8kbd:F (3.15) BS01 rna N/A N/A P0DW61 39478223
    847416 8kbd:G (3.15) BS01 rna N/A N/A P0DW61 39478223
    847417 8kbd:H (3.15) BS01 rna N/A N/A P0DW61 39478223
    847418 8kbd:I (3.15) BS01 rna N/A N/A P0DW61 39478223
    847419 8kbd:J (3.15) BS01 rna N/A N/A P0DW61 39478223
    847420 8kbd:K (3.15) BS01 rna N/A N/A P0DW61 39478223
    847421 8kbd:L (3.15) BS01 rna N/A N/A P0DW61 39478223
    847422 8kbe:A (2.16) BS01 OJC N/A N/A P0DW58 39478223
    847423 8kbe:A (2.16) BS02 OJC N/A N/A P0DW58 39478223
    847424 8kbe:B (2.16) BS01 OJC N/A N/A P0DW58 39478223
    847425 8kbe:B (2.16) BS02 OJC N/A N/A P0DW58 39478223
    847426 8kbf:A (2.31) BS01 rna N/A N/A P0DW58 39478223
    847427 8kbf:A (2.31) BS02 OJC N/A N/A P0DW58 39478223
    847428 8kbf:A (2.31) BS03 OJC N/A N/A P0DW58 39478223
    847429 8kbf:B (2.31) BS01 rna N/A N/A P0DW58 39478223
    847430 8kbf:B (2.31) BS02 OJC N/A N/A P0DW58 39478223
    847431 8kbf:B (2.31) BS03 OJC N/A N/A P0DW58 39478223
    847432 8kbg:D (2.37) BS01 1SY N/A N/A P0DW58 39478223
    847433 8kbg:D (2.37) BS02 1SY N/A N/A P0DW58 39478223
    847434 8kbg:E (2.37) BS01 1SY N/A N/A P0DW58 39478223
    847435 8kbg:E (2.37) BS02 1SY N/A N/A P0DW58 39478223
    847436 8kbg:F (2.37) BS01 1SY N/A N/A P0DW58 39478223
    847437 8kbg:F (2.37) BS02 1SY N/A N/A P0DW58 39478223
    847438 8kbg:G (2.37) BS01 1SY N/A N/A P0DW58 39478223
    847439 8kbg:G (2.37) BS02 1SY N/A N/A P0DW58 39478223
    847440 8kbg:H (2.37) BS01 1SY N/A N/A P0DW58 39478223
    847441 8kbg:H (2.37) BS02 1SY N/A N/A P0DW58 39478223
    847442 8kbg:I (2.37) BS01 1SY N/A N/A P0DW58 39478223
    847443 8kbg:I (2.37) BS02 1SY N/A N/A P0DW58 39478223
    847444 8kbh:A (1.54) BS01 rna N/A N/A P0DW58 39478223
    847445 8kbh:A (1.54) BS02 1SY N/A N/A P0DW58 39478223
    847446 8kbh:A (1.54) BS03 1SY N/A N/A P0DW58 39478223
    847447 8kbh:B (1.54) BS01 1SY N/A N/A P0DW58 39478223
    847448 8kbh:B (1.54) BS02 1SY N/A N/A P0DW58 39478223
    847449 8kbh:C (1.54) BS01 1SY N/A N/A P0DW58 39478223
    847450 8kbh:D (1.54) BS01 rna N/A N/A P0DW58 39478223
    847451 8kbh:D (1.54) BS02 1SY N/A N/A P0DW58 39478223
    847452 8kbh:D (1.54) BS03 1SY N/A N/A P0DW58 39478223
    847453 8kbh:E (1.54) BS01 rna N/A N/A P0DW58 39478223
    847454 8kbh:E (1.54) BS02 1SY N/A N/A P0DW58 39478223
    847455 8kbh:E (1.54) BS03 1SY N/A N/A P0DW58 39478223
    847456 8kbh:F (1.54) BS01 rna N/A N/A P0DW58 39478223
    847457 8kbh:F (1.54) BS02 1SY N/A N/A P0DW58 39478223
    847458 8kbh:F (1.54) BS03 1SY N/A N/A P0DW58 39478223
    847459 8kbh:G (1.54) BS01 rna N/A N/A P0DW58 39478223
    847460 8kbh:G (1.54) BS02 1SY N/A N/A P0DW58 39478223
    847461 8kbh:G (1.54) BS03 1SY N/A N/A P0DW58 39478223
    847462 8kbh:H (1.54) BS01 rna N/A N/A P0DW58 39478223
    847463 8kbh:H (1.54) BS02 1SY N/A N/A P0DW58 39478223
    847464 8kbh:H (1.54) BS03 1SY N/A N/A P0DW58 39478223
    847465 8kbh:I (1.54) BS01 rna N/A N/A P0DW58 39478223
    847466 8kbh:I (1.54) BS02 1SY N/A N/A P0DW58 39478223
    847467 8kbh:I (1.54) BS03 1SY N/A N/A P0DW58 39478223
    847468 8kbj:A (2.1) BS01 MF6 N/A N/A A0A447EB45 39478223
    847469 8kbj:B (2.1) BS01 MF6 N/A N/A A0A447EB45 39478223
    847470 8kbj:C (2.1) BS01 MF6 N/A N/A A0A447EB45 39478223
    847471 8kbj:D (2.1) BS01 MF6 N/A N/A A0A447EB45 39478223
    847472 8kbk:A (2.28) BS01 MF6 N/A N/A A0A447EB45 39478223
    847473 8kbk:A (2.28) BS02 C2E N/A N/A A0A447EB45 39478223
    847474 8kbk:B (2.28) BS01 MF6 N/A N/A A0A447EB45 39478223
    847475 8kbk:B (2.28) BS02 C2E N/A N/A A0A447EB45 39478223
    847476 8kbk:C (2.28) BS01 MF6 N/A N/A A0A447EB45 39478223
    847477 8kbk:C (2.28) BS02 C2E N/A N/A A0A447EB45 39478223
    847478 8kbk:D (2.28) BS01 C2E N/A N/A A0A447EB45 39478223
    847479 8kbk:D (2.28) BS02 MF6 N/A N/A A0A447EB45 39478223
    847480 8kbl:A (1.98) BS01 OJC N/A N/A A0A447EB45 39478223
    847481 8kbl:A (1.98) BS02 C2E N/A N/A A0A447EB45 39478223
    847482 8kbm:A (1.38) BS01 C2E N/A N/A A0A447EB45 39478223
    847483 8kbm:B (1.38) BS01 C2E N/A N/A A0A447EB45 39478223
    847484 8kc2:A (2.6) BS01 ZN 3.4.-.-
    3.4.17.23
    GO:0006508 ... A0A1U7QTA1 38305152
    847485 8kc9:A (3.75) BS01 FE N/A GO:0005506 ... Q32P28 39245686
    847486 8kc9:C (3.75) BS01 peptide N/A GO:0000413 ... P23284 39245686
    847487 8kcb:A (3.17) BS01 dna N/A GO:0000786 ... Q9LD28 38870940
    847488 8kcb:A (3.17) BS02 dna N/A GO:0000786 ... Q9LD28 38870940
    847489 8kcb:B (3.17) BS01 dna N/A GO:0000786 ... Q9LD28 38870940
    847490 8kcb:B (3.17) BS02 dna N/A GO:0000786 ... Q9LD28 38870940
    847491 8kcb:C (3.17) BS01 dna N/A GO:0000786 ... Q9FFC0 38870940
    847492 8kcb:C (3.17) BS02 dna N/A GO:0000786 ... Q9FFC0 38870940
    847493 8kcb:D (3.17) BS01 dna N/A GO:0000786 ... Q9FFC0 38870940
    847494 8kcb:D (3.17) BS02 dna N/A GO:0000786 ... Q9FFC0 38870940
    847495 8kcb:E (3.17) BS01 dna N/A GO:0000786 ... P59226 38870940
    847496 8kcb:E (3.17) BS02 dna N/A GO:0000786 ... P59226 38870940
    847497 8kcb:F (3.17) BS01 dna N/A GO:0000786 ... P59226 38870940
    847498 8kcb:F (3.17) BS02 dna N/A GO:0000786 ... P59226 38870940
    847499 8kcb:G (3.17) BS01 dna N/A GO:0000325 ... P59259 38870940
    847500 8kcb:G (3.17) BS02 dna N/A GO:0000325 ... P59259 38870940
    847501 8kcb:H (3.17) BS01 dna N/A GO:0000325 ... P59259 38870940
    847502 8kcb:H (3.17) BS02 dna N/A GO:0000325 ... P59259 38870940
    847503 8kcb:K (3.17) BS01 dna N/A GO:0000785 ... Q9XFH4 38870940
    847504 8kcb:K (3.17) BS02 dna N/A GO:0000785 ... Q9XFH4 38870940
    847505 8kcb:K (3.17) BS03 BEF N/A GO:0000785 ... Q9XFH4 38870940
    847506 8kcb:K (3.17) BS04 ADP N/A GO:0000785 ... Q9XFH4 38870940
    847507 8kcc:A (3.1) BS01 dna N/A GO:0000786 ... Q9FJE8 38870940
    847508 8kcc:A (3.1) BS02 dna N/A GO:0000786 ... Q9FJE8 38870940
    847509 8kcc:B (3.1) BS01 dna N/A GO:0000786 ... Q9FJE8 38870940
    847510 8kcc:B (3.1) BS02 dna N/A GO:0000786 ... Q9FJE8 38870940
    847511 8kcc:C (3.1) BS01 dna N/A GO:0000786 ... Q9FFC0 38870940
    847512 8kcc:C (3.1) BS02 dna N/A GO:0000786 ... Q9FFC0 38870940
    847513 8kcc:D (3.1) BS01 dna N/A GO:0000786 ... Q9FFC0 38870940
    847514 8kcc:D (3.1) BS02 dna N/A GO:0000786 ... Q9FFC0 38870940
    847515 8kcc:E (3.1) BS01 dna N/A GO:0000786 ... P59226 38870940
    847516 8kcc:E (3.1) BS02 dna N/A GO:0000786 ... P59226 38870940
    847517 8kcc:F (3.1) BS01 dna N/A GO:0000786 ... P59226 38870940
    847518 8kcc:F (3.1) BS02 dna N/A GO:0000786 ... P59226 38870940
    847519 8kcc:G (3.1) BS01 dna N/A GO:0000325 ... P59259 38870940
    847520 8kcc:G (3.1) BS02 dna N/A GO:0000325 ... P59259 38870940
    847521 8kcc:H (3.1) BS01 dna N/A GO:0000325 ... P59259 38870940
    847522 8kcc:H (3.1) BS02 dna N/A GO:0000325 ... P59259 38870940
    847523 8kcc:K (3.1) BS01 dna N/A GO:0000785 ... Q9XFH4 38870940
    847524 8kcc:K (3.1) BS02 dna N/A GO:0000785 ... Q9XFH4 38870940
    847525 8kcc:K (3.1) BS03 ADP N/A GO:0000785 ... Q9XFH4 38870940
    847526 8kcc:K (3.1) BS04 BEF N/A GO:0000785 ... Q9XFH4 38870940
    847527 8kce:A (1.05) BS01 ZN N/A N/A A0A1D1V463 39417615
    847528 8kce:A (1.05) BS02 MG N/A N/A A0A1D1V463 39417615
    847529 8kci:A (3.94) BS01 ATP N/A GO:0005524 ... O15440 38844452
    847530 8kci:A (3.94) BS02 ATP N/A GO:0005524 ... O15440 38844452
    847531 8kci:A (3.94) BS03 MG N/A GO:0005524 ... O15440 38844452
    847532 8kci:A (3.94) BS04 MG N/A GO:0005524 ... O15440 38844452
    847533 8kcm:A (2.5) BS01 dna 4.1.99.3 GO:0000719 ... Q8PYK9 38033054
    847534 8kcm:A (2.5) BS02 dna 4.1.99.3 GO:0000719 ... Q8PYK9 38033054
    847535 8kcm:A (2.5) BS03 FAD 4.1.99.3 GO:0000719 ... Q8PYK9 38033054
    847536 8kcm:B (2.5) BS01 dna 4.1.99.3 GO:0000719 ... Q8PYK9 38033054
    847537 8kcm:B (2.5) BS02 dna 4.1.99.3 GO:0000719 ... Q8PYK9 38033054
    847538 8kcm:B (2.5) BS03 FAD 4.1.99.3 GO:0000719 ... Q8PYK9 38033054
    847539 8kco:B (2.8) BS01 N60 N/A GO:0000122 ... P49768 39653842
    847540 8kco:C (2.8) BS01 CLR N/A GO:0000139 ... Q96BI3 39653842
    847541 8kco:C (2.8) BS02 CLR N/A GO:0000139 ... Q96BI3 39653842
    847542 8kcp:B (3.0) BS01 N9C N/A GO:0000122 ... P49768 39653842
    847543 8kcp:C (3.0) BS01 CLR N/A GO:0000139 ... Q96BI3 39653842
    847544 8kcp:C (3.0) BS02 CLR N/A GO:0000139 ... Q96BI3 39653842
    847545 8kcp:C (3.0) BS03 CLR N/A GO:0000139 ... Q96BI3 39653842
    847546 8kcs:B (2.4) BS01 Q70 N/A GO:0000122 ... P49768 39653842
    847547 8kcs:C (2.4) BS01 CLR N/A GO:0000139 ... Q96BI3 39653842
    847548 8kcs:C (2.4) BS02 CLR N/A GO:0000139 ... Q96BI3 39653842
    847549 8kcs:C (2.4) BS03 CLR N/A GO:0000139 ... Q96BI3 39653842
    847550 8kct:B (2.6) BS01 O6U N/A GO:0000122 ... P49768 39653842
    847551 8kct:C (2.6) BS01 CLR N/A GO:0000139 ... Q96BI3 39653842
    847552 8kct:C (2.6) BS02 CLR N/A GO:0000139 ... Q96BI3 39653842
    847553 8kct:C (2.6) BS03 CLR N/A GO:0000139 ... Q96BI3 39653842
    847554 8kcu:B (2.7) BS01 OL9 N/A GO:0000122 ... P49768 39653842
    847555 8kcu:C (2.7) BS01 CLR N/A GO:0000139 ... Q96BI3 39653842
    847556 8kcu:C (2.7) BS02 CLR N/A GO:0000139 ... Q96BI3 39653842
    847557 8kcu:C (2.7) BS03 CLR N/A GO:0000139 ... Q96BI3 39653842
    847558 8kcv:A (2.39) BS01 peptide N/A N/A Q6I7L1 N/A
    847559 8kcv:D (2.39) BS01 peptide N/A N/A Q6I7L1 N/A
    847560 8kcw:A (2.77) BS01 ZN ? GO:0016020 ... Q9NXL6 38811802
    847561 8kcw:A (2.77) BS02 CLR ? GO:0016020 ... Q9NXL6 38811802
    847562 8kcw:A (2.77) BS03 CLR ? GO:0016020 ... Q9NXL6 38811802
    847563 8kcw:C (2.77) BS01 ZN ? GO:0016020 ... Q9NXL6 38811802
    847564 8kcw:C (2.77) BS02 CLR ? GO:0016020 ... Q9NXL6 38811802
    847565 8kcw:C (2.77) BS03 CLR ? GO:0016020 ... Q9NXL6 38811802
    847566 8kcx:A (2.96) BS01 ZN ? GO:0016020 ... Q9NXL6 38811802
    847567 8kcx:C (2.96) BS01 ZN ? GO:0016020 ... Q9NXL6 38811802
    847568 8kcy:A (2.8) BS01 dna N/A GO:0000786 ... P68431 39984731
    847569 8kcy:A (2.8) BS02 dna N/A GO:0000786 ... P68431 39984731
    847570 8kcy:B (2.8) BS01 dna N/A GO:0000781 ... P62805 39984731
    847571 8kcy:B (2.8) BS02 dna N/A GO:0000781 ... P62805 39984731
    847572 8kcy:C (2.8) BS01 dna N/A GO:0000786 ... P04908 39984731
    847573 8kcy:C (2.8) BS02 dna N/A GO:0000786 ... P04908 39984731
    847574 8kcy:D (2.8) BS01 dna N/A GO:0000786 ... P06899 39984731
    847575 8kcy:D (2.8) BS02 dna N/A GO:0000786 ... P06899 39984731
    847576 8kcy:E (2.8) BS01 dna N/A GO:0000786 ... P68431 39984731
    847577 8kcy:E (2.8) BS02 dna N/A GO:0000786 ... P68431 39984731
    847578 8kcy:F (2.8) BS01 dna N/A GO:0000781 ... P62805 39984731
    847579 8kcy:F (2.8) BS02 dna N/A GO:0000781 ... P62805 39984731
    847580 8kcy:G (2.8) BS01 dna N/A GO:0000786 ... P04908 39984731
    847581 8kcy:G (2.8) BS02 dna N/A GO:0000786 ... P04908 39984731
    847582 8kcy:H (2.8) BS01 dna N/A GO:0000786 ... P06899 39984731
    847583 8kcy:H (2.8) BS02 dna N/A GO:0000786 ... P06899 39984731
    847584 8kcy:K (2.8) BS01 dna N/A GO:0003677 ... P35659 39984731
    847585 8kcy:K (2.8) BS02 dna N/A GO:0003677 ... P35659 39984731
    847586 8kcy:L (2.8) BS01 dna N/A GO:0003677 ... P35659 39984731
    847587 8kcy:L (2.8) BS02 dna N/A GO:0003677 ... P35659 39984731
    847588 8kcz:A (2.3) BS01 FAD 1.3.99.4 GO:0008202 ... Q9RA02 N/A
    847589 8kcz:A (2.3) BS02 ANB 1.3.99.4 GO:0008202 ... Q9RA02 N/A
    847590 8kd0:A (1.675) BS01 GAL N/A GO:0042597 ... Q4FMK2 39261732
    847591 8kd1:A (3.2) BS01 dna N/A GO:0000786 ... P68431 39984731
    847592 8kd1:A (3.2) BS02 dna N/A GO:0000786 ... P68431 39984731
    847593 8kd1:B (3.2) BS01 dna N/A GO:0000781 ... P62805 39984731
    847594 8kd1:B (3.2) BS02 dna N/A GO:0000781 ... P62805 39984731
    847595 8kd1:C (3.2) BS01 dna N/A GO:0000786 ... P04908 39984731
    847596 8kd1:C (3.2) BS02 dna N/A GO:0000786 ... P04908 39984731
    847597 8kd1:D (3.2) BS01 dna N/A GO:0000786 ... P06899 39984731
    847598 8kd1:E (3.2) BS01 dna N/A GO:0000786 ... P68431 39984731
    847599 8kd1:E (3.2) BS02 dna N/A GO:0000786 ... P68431 39984731
    847600 8kd1:F (3.2) BS01 dna N/A GO:0000781 ... P62805 39984731

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).