SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    848401 8oeq:CQ (3.3) BS01 rna N/A GO:0003723 ... A0A8H6BYS1 N/A
    848402 8oeq:CR (3.3) BS01 rna N/A GO:0002181 ... A0A1D8PCI6 N/A
    848403 8oeq:CS (3.3) BS01 rna N/A GO:0003723 ... A0A8H6BS29 N/A
    848404 8oeq:CT (3.3) BS01 rna N/A GO:0003735 ... A0A8H6BZ37 N/A
    848405 8oeq:CU (3.3) BS01 rna N/A GO:0003735 ... A0A8H6C655 N/A
    848406 8oeq:CV (3.3) BS01 rna N/A GO:0003735 ... A0A8H6F0S0 N/A
    848407 8oeq:CV (3.3) BS02 rna N/A GO:0003735 ... A0A8H6F0S0 N/A
    848408 8oeq:CW (3.3) BS01 rna N/A GO:0003723 ... A0A8H6F1X2 N/A
    848409 8oeq:CW (3.3) BS02 MG N/A GO:0003723 ... A0A8H6F1X2 N/A
    848410 8oeq:CX (3.3) BS01 rna N/A GO:0003723 ... A0A8H6BWQ8 N/A
    848411 8oeq:CY (3.3) BS01 rna N/A GO:0003674 ... A0A1D8PN83 N/A
    848412 8oeq:CZ (3.3) BS01 rna N/A GO:0000028 ... A0A8H6C3A1 N/A
    848413 8oeq:D (3.3) BS01 rna N/A GO:0003735 ... A0A8H6C387 N/A
    848414 8oeq:D (3.3) BS02 PAR N/A GO:0003735 ... A0A8H6C387 N/A
    848415 8oeq:DA (3.3) BS01 rna N/A GO:0003735 ... A0A8H6F4G0 N/A
    848416 8oeq:DA (3.3) BS02 rna N/A GO:0003735 ... A0A8H6F4G0 N/A
    848417 8oeq:DB (3.3) BS01 rna N/A GO:0003735 ... A0A8H6F0V4 N/A
    848418 8oeq:DB (3.3) BS02 MG N/A GO:0003735 ... A0A8H6F0V4 N/A
    848419 8oeq:DC (3.3) BS01 rna N/A GO:0003723 ... A0A1D8PK22 N/A
    848420 8oeq:DC (3.3) BS02 MG N/A GO:0003723 ... A0A1D8PK22 N/A
    848421 8oeq:DD (3.3) BS01 rna N/A GO:0000462 ... O94017 N/A
    848422 8oeq:DE (3.3) BS01 rna N/A GO:0000028 ... A0A8H6BTR7 N/A
    848423 8oeq:DF (3.3) BS01 rna N/A GO:0000054 ... A0A8H6F3Y8 N/A
    848424 8oeq:DG (3.3) BS01 rna N/A GO:0000028 ... A0A8H6C5L4 N/A
    848425 8oeq:DH (3.3) BS01 rna N/A GO:0000462 ... A0A8H6BYJ9 N/A
    848426 8oeq:DI (3.3) BS01 rna N/A GO:0000461 ... Q9P844 N/A
    848427 8oeq:DJ (3.3) BS01 rna N/A GO:0003735 ... A0A8H6F0N4 N/A
    848428 8oeq:DK (3.3) BS01 rna N/A GO:0003735 ... A0A8H6F0V0 N/A
    848429 8oeq:DL (3.3) BS01 rna N/A GO:0003735 ... A0A8H6C3K1 N/A
    848430 8oeq:DM (3.3) BS01 rna N/A N/A A0A8H6EZQ8 N/A
    848431 8oeq:DN (3.3) BS01 rna N/A GO:0003729 ... A0A8H6BTS1 N/A
    848432 8oeq:DO (3.3) BS01 rna N/A GO:0003735 ... A0A8H6BWE6 N/A
    848433 8oeq:DP (3.3) BS01 rna N/A GO:0000028 ... A0A8H6C0A5 N/A
    848434 8oeq:DQ (3.3) BS01 rna N/A GO:0002181 ... A0A1D8PTR4 N/A
    848435 8oeq:DQ (3.3) BS02 MG N/A GO:0002181 ... A0A1D8PTR4 N/A
    848436 8oeq:DQ (3.3) BS03 ZN N/A GO:0002181 ... A0A1D8PTR4 N/A
    848437 8oeq:DR (3.3) BS01 rna N/A GO:0003735 ... A0A1D8PSK2 N/A
    848438 8oeq:DS (3.3) BS01 rna N/A GO:0000028 ... Q5A109 N/A
    848439 8oeq:DT (3.3) BS01 rna N/A GO:0001965 ... A0A8H6C3E7 N/A
    848440 8oeq:E (3.3) BS01 rna N/A GO:0000054 ... A0A8H6BZ90 N/A
    848441 8oeq:F (3.3) BS01 rna N/A GO:0003723 ... A0A8H6BYS1 N/A
    848442 8oeq:F (3.3) BS02 MG N/A GO:0003723 ... A0A8H6BYS1 N/A
    848443 8oeq:G (3.3) BS01 rna N/A GO:0002181 ... A0A1D8PCI6 N/A
    848444 8oeq:H (3.3) BS01 rna N/A GO:0003723 ... A0A8H6BS29 N/A
    848445 8oeq:H (3.3) BS02 MG N/A GO:0003723 ... A0A8H6BS29 N/A
    848446 8oeq:I (3.3) BS01 rna N/A GO:0003735 ... A0A8H6BZ37 N/A
    848447 8oeq:I (3.3) BS02 MG N/A GO:0003735 ... A0A8H6BZ37 N/A
    848448 8oeq:J (3.3) BS01 rna N/A GO:0003735 ... A0A8H6C655 N/A
    848449 8oeq:K (3.3) BS01 rna N/A GO:0003735 ... A0A8H6F0S0 N/A
    848450 8oeq:K (3.3) BS02 rna N/A GO:0003735 ... A0A8H6F0S0 N/A
    848451 8oeq:K (3.3) BS03 MG N/A GO:0003735 ... A0A8H6F0S0 N/A
    848452 8oeq:L (3.3) BS01 rna N/A GO:0003723 ... A0A8H6F1X2 N/A
    848453 8oeq:L1 (3.3) BS01 rna N/A GO:0000055 ... A0A8H6F4E7 N/A
    848454 8oeq:M (3.3) BS01 rna N/A GO:0003723 ... A0A8H6BWQ8 N/A
    848455 8oeq:N (3.3) BS01 rna N/A GO:0003674 ... A0A1D8PN83 N/A
    848456 8oeq:O (3.3) BS01 rna N/A GO:0000028 ... A0A8H6C3A1 N/A
    848457 8oeq:P (3.3) BS01 rna N/A GO:0003735 ... A0A8H6F4G0 N/A
    848458 8oeq:Q (3.3) BS01 rna N/A GO:0003735 ... A0A8H6F0V4 N/A
    848459 8oeq:Q (3.3) BS02 PAR N/A GO:0003735 ... A0A8H6F0V4 N/A
    848460 8oeq:Q (3.3) BS03 MG N/A GO:0003735 ... A0A8H6F0V4 N/A
    848461 8oeq:R (3.3) BS01 rna N/A GO:0003723 ... A0A1D8PK22 N/A
    848462 8oeq:R (3.3) BS02 rna N/A GO:0003723 ... A0A1D8PK22 N/A
    848463 8oeq:S (3.3) BS01 rna N/A GO:0000462 ... O94017 N/A
    848464 8oeq:T (3.3) BS01 rna N/A GO:0000028 ... A0A8H6BTR7 N/A
    848465 8oeq:U (3.3) BS01 rna N/A GO:0000054 ... A0A8H6F3Y8 N/A
    848466 8oeq:V (3.3) BS01 rna N/A GO:0000028 ... A0A8H6C5L4 N/A
    848467 8oeq:V (3.3) BS02 MG N/A GO:0000028 ... A0A8H6C5L4 N/A
    848468 8oeq:W (3.3) BS01 rna N/A GO:0000462 ... A0A8H6BYJ9 N/A
    848469 8oeq:X (3.3) BS01 rna N/A GO:0000461 ... Q9P844 N/A
    848470 8oeq:Y (3.3) BS01 rna N/A GO:0003735 ... A0A8H6F0N4 N/A
    848471 8oeq:Y (3.3) BS02 MG N/A GO:0003735 ... A0A8H6F0N4 N/A
    848472 8oeq:Y (3.3) BS03 MG N/A GO:0003735 ... A0A8H6F0N4 N/A
    848473 8oeq:Z (3.3) BS01 rna N/A GO:0003735 ... A0A8H6F0V0 N/A
    848474 8oeq:Z (3.3) BS02 MG N/A GO:0003735 ... A0A8H6F0V0 N/A
    848475 8oeq:a (3.3) BS01 rna N/A GO:0003735 ... A0A8H6C3K1 N/A
    848476 8oeq:b (3.3) BS01 rna N/A N/A A0A8H6EZQ8 N/A
    848477 8oeq:c (3.3) BS01 rna N/A GO:0003729 ... A0A8H6BTS1 N/A
    848478 8oeq:c (3.3) BS02 ZN N/A GO:0003729 ... A0A8H6BTS1 N/A
    848479 8oeq:d (3.3) BS01 rna N/A GO:0003735 ... A0A8H6BWE6 N/A
    848480 8oeq:e (3.3) BS01 rna N/A GO:0000028 ... A0A8H6C0A5 N/A
    848481 8oeq:f (3.3) BS01 rna N/A GO:0002181 ... A0A1D8PTR4 N/A
    848482 8oeq:f (3.3) BS02 ZN N/A GO:0002181 ... A0A1D8PTR4 N/A
    848483 8oeq:g (3.3) BS01 rna N/A GO:0003735 ... A0A1D8PSK2 N/A
    848484 8oeq:h (3.3) BS01 rna N/A GO:0000028 ... Q5A109 N/A
    848485 8oeq:i (3.3) BS01 rna N/A GO:0000723 ... A0A1D8PK71 N/A
    848486 8oeq:i (3.3) BS02 rna N/A GO:0000723 ... A0A1D8PK71 N/A
    848487 8oeq:j (3.3) BS01 rna N/A GO:0002181 ... A0A8H6F1X9 N/A
    848488 8oeq:j (3.3) BS02 rna N/A GO:0002181 ... A0A8H6F1X9 N/A
    848489 8oeq:j (3.3) BS03 MG N/A GO:0002181 ... A0A8H6F1X9 N/A
    848490 8oeq:j (3.3) BS04 MG N/A GO:0002181 ... A0A8H6F1X9 N/A
    848491 8oeq:k (3.3) BS01 rna N/A GO:0000027 ... Q59LS1 N/A
    848492 8oeq:k (3.3) BS02 MG N/A GO:0000027 ... Q59LS1 N/A
    848493 8oeq:k (3.3) BS03 MG N/A GO:0000027 ... Q59LS1 N/A
    848494 8oeq:k (3.3) BS04 MG N/A GO:0000027 ... Q59LS1 N/A
    848495 8oeq:l (3.3) BS01 rna N/A GO:0003735 ... A0A8H6F4H4 N/A
    848496 8oeq:l (3.3) BS02 rna N/A GO:0003735 ... A0A8H6F4H4 N/A
    848497 8oeq:l1 (3.3) BS01 rna N/A GO:0000055 ... A0A8H6F4E7 N/A
    848498 8oeq:m (3.3) BS01 rna N/A GO:0000027 ... G1UAA6 N/A
    848499 8oeq:m (3.3) BS02 rna N/A GO:0000027 ... G1UAA6 N/A
    848500 8oeq:n (3.3) BS01 rna N/A GO:0000027 ... Q9P834 N/A
    848501 8oeq:o (3.3) BS01 rna N/A GO:0000463 ... A0A8H6BVN2 N/A
    848502 8oeq:o (3.3) BS02 rna N/A GO:0000463 ... A0A8H6BVN2 N/A
    848503 8oeq:p (3.3) BS01 rna N/A GO:0003723 ... A0A8H6C337 N/A
    848504 8oeq:p (3.3) BS02 rna N/A GO:0003723 ... A0A8H6C337 N/A
    848505 8oeq:q (3.3) BS01 rna N/A GO:0002181 ... A0A8H6C3N3 N/A
    848506 8oeq:r (3.3) BS01 rna N/A GO:0003735 ... Q5AIB8 N/A
    848507 8oeq:r (3.3) BS02 rna N/A GO:0003735 ... Q5AIB8 N/A
    848508 8oeq:r (3.3) BS03 MG N/A GO:0003735 ... Q5AIB8 N/A
    848509 8oeq:r (3.3) BS04 MG N/A GO:0003735 ... Q5AIB8 N/A
    848510 8oeq:s (3.3) BS01 rna N/A GO:0003735 ... A0A8H6F1S5 N/A
    848511 8oeq:s (3.3) BS02 rna N/A GO:0003735 ... A0A8H6F1S5 N/A
    848512 8oeq:t (3.3) BS01 rna N/A GO:0003723 ... A0A8H6F5V7 N/A
    848513 8oeq:t (3.3) BS02 rna N/A GO:0003723 ... A0A8H6F5V7 N/A
    848514 8oeq:u (3.3) BS01 rna N/A GO:0003723 ... A0A8H6F332 N/A
    848515 8oeq:u (3.3) BS02 MG N/A GO:0003723 ... A0A8H6F332 N/A
    848516 8oeq:v (3.3) BS01 rna N/A GO:0002181 ... Q5A6R1 N/A
    848517 8oeq:v (3.3) BS02 rna N/A GO:0002181 ... Q5A6R1 N/A
    848518 8oeq:v (3.3) BS03 MG N/A GO:0002181 ... Q5A6R1 N/A
    848519 8oeq:v (3.3) BS04 MG N/A GO:0002181 ... Q5A6R1 N/A
    848520 8oeq:v (3.3) BS05 MG N/A GO:0002181 ... Q5A6R1 N/A
    848521 8oeq:w (3.3) BS01 rna N/A GO:0003729 ... A0A8H6BZ56 N/A
    848522 8oeq:w (3.3) BS02 MG N/A GO:0003729 ... A0A8H6BZ56 N/A
    848523 8oeq:x (3.3) BS01 rna N/A GO:0002181 ... A0A8H6BUG0 N/A
    848524 8oeq:x (3.3) BS02 rna N/A GO:0002181 ... A0A8H6BUG0 N/A
    848525 8oeq:x (3.3) BS03 MG N/A GO:0002181 ... A0A8H6BUG0 N/A
    848526 8oeq:x (3.3) BS04 MG N/A GO:0002181 ... A0A8H6BUG0 N/A
    848527 8oeq:y (3.3) BS01 rna N/A GO:0003723 ... A0A8H6C4Y1 N/A
    848528 8oeq:z (3.3) BS01 rna N/A GO:0003723 ... A0A1D8PK40 N/A
    848529 8oeq:z (3.3) BS02 rna N/A GO:0003723 ... A0A1D8PK40 N/A
    848530 8oeq:z (3.3) BS03 MG N/A GO:0003723 ... A0A1D8PK40 N/A
    848531 8oer:A (3.0) BS01 CA ? N/A Q9HC84 N/A
    848532 8oer:A (3.0) BS02 CA ? N/A Q9HC84 N/A
    848533 8oer:B (3.0) BS01 CA ? N/A Q9HC84 N/A
    848534 8oer:B (3.0) BS02 CA ? N/A Q9HC84 N/A
    848535 8oer:C (3.0) BS01 CA ? N/A Q9HC84 N/A
    848536 8oer:D (3.0) BS01 CA ? N/A Q9HC84 N/A
    848537 8oer:I (3.0) BS01 CA ? N/A Q9HC84 N/A
    848538 8oer:J (3.0) BS01 CA ? N/A Q9HC84 N/A
    848539 8oes:A (3.0) BS01 CA ? N/A Q9HC84 N/A
    848540 8oes:A (3.0) BS02 CA ? N/A Q9HC84 N/A
    848541 8oes:A (3.0) BS03 CA ? N/A Q9HC84 N/A
    848542 8oes:B (3.0) BS01 CA ? N/A Q9HC84 N/A
    848543 8oes:B (3.0) BS02 CA ? N/A Q9HC84 N/A
    848544 8oes:B (3.0) BS03 CA ? N/A Q9HC84 N/A
    848545 8oes:C (3.0) BS01 CA ? N/A Q9HC84 N/A
    848546 8oes:C (3.0) BS02 CA ? N/A Q9HC84 N/A
    848547 8oes:C (3.0) BS03 CA ? N/A Q9HC84 N/A
    848548 8oes:D (3.0) BS01 CA ? N/A Q9HC84 N/A
    848549 8oes:D (3.0) BS02 CA ? N/A Q9HC84 N/A
    848550 8oes:D (3.0) BS03 CA ? N/A Q9HC84 N/A
    848551 8oes:E (3.0) BS01 CA ? N/A Q9HC84 N/A
    848552 8oes:E (3.0) BS02 CA ? N/A Q9HC84 N/A
    848553 8oes:F (3.0) BS01 CA ? N/A Q9HC84 N/A
    848554 8oes:F (3.0) BS02 CA ? N/A Q9HC84 N/A
    848555 8oes:G (3.0) BS01 CA ? N/A Q9HC84 N/A
    848556 8oes:H (3.0) BS01 CA ? N/A Q9HC84 N/A
    848557 8oes:I (3.0) BS01 CA ? N/A Q9HC84 N/A
    848558 8oes:J (3.0) BS01 CA ? N/A Q9HC84 N/A
    848559 8oes:K (3.0) BS01 CA ? N/A Q9HC84 N/A
    848560 8oes:L (3.0) BS01 CA ? N/A Q9HC84 N/A
    848561 8oes:M (3.0) BS01 CA ? N/A Q9HC84 N/A
    848562 8oes:N (3.0) BS01 CA ? N/A Q9HC84 N/A
    848563 8oet:A (2.11) BS01 dna 4.1.99.3 GO:0000719 ... Q8PYK9 38033070
    848564 8oet:A (2.11) BS02 dna 4.1.99.3 GO:0000719 ... Q8PYK9 38033070
    848565 8oet:A (2.11) BS03 FDA 4.1.99.3 GO:0000719 ... Q8PYK9 38033070
    848566 8oet:B (2.11) BS01 dna 4.1.99.3 GO:0000719 ... Q8PYK9 38033070
    848567 8oet:B (2.11) BS02 dna 4.1.99.3 GO:0000719 ... Q8PYK9 38033070
    848568 8oet:B (2.11) BS03 FDA 4.1.99.3 GO:0000719 ... Q8PYK9 38033070
    848569 8oeu:A (3.04) BS01 dna 2.7.7.6 GO:0000974 ... P11414 37932450
    848570 8oeu:A (3.04) BS02 rna 2.7.7.6 GO:0000974 ... P11414 37932450
    848571 8oeu:A (3.04) BS03 dna 2.7.7.6 GO:0000974 ... P11414 37932450
    848572 8oeu:A (3.04) BS04 MG 2.7.7.6 GO:0000974 ... P11414 37932450
    848573 8oeu:A (3.04) BS05 ZN 2.7.7.6 GO:0000974 ... P11414 37932450
    848574 8oeu:A (3.04) BS06 ZN 2.7.7.6 GO:0000974 ... P11414 37932450
    848575 8oeu:B (3.04) BS01 rna 2.7.7.6 GO:0000781 ... I3LGP4 37932450
    848576 8oeu:B (3.04) BS02 dna 2.7.7.6 GO:0000781 ... I3LGP4 37932450
    848577 8oeu:B (3.04) BS03 ZN 2.7.7.6 GO:0000781 ... I3LGP4 37932450
    848578 8oeu:C (3.04) BS01 ZN ? GO:0003677 ... I3LCH3 37932450
    848579 8oeu:E (3.04) BS01 dna ? GO:0003677 ... I3LSI7 37932450
    848580 8oeu:I (3.04) BS01 ZN ? GO:0001193 ... P60899 37932450
    848581 8oeu:I (3.04) BS02 ZN ? GO:0001193 ... P60899 37932450
    848582 8oeu:J (3.04) BS01 ZN ? GO:0003677 ... A0A8W4F9W9 37932450
    848583 8oeu:L (3.04) BS01 ZN ? GO:0001650 ... A0A4X1TRS6 37932450
    848584 8oev:A (2.86) BS01 dna 2.7.7.6 GO:0000974 ... P11414 37932450
    848585 8oev:A (2.86) BS02 rna 2.7.7.6 GO:0000974 ... P11414 37932450
    848586 8oev:A (2.86) BS03 dna 2.7.7.6 GO:0000974 ... P11414 37932450
    848587 8oev:A (2.86) BS04 MG 2.7.7.6 GO:0000974 ... P11414 37932450
    848588 8oev:A (2.86) BS05 ZN 2.7.7.6 GO:0000974 ... P11414 37932450
    848589 8oev:A (2.86) BS06 ZN 2.7.7.6 GO:0000974 ... P11414 37932450
    848590 8oev:B (2.86) BS01 rna 2.7.7.6 GO:0000781 ... I3LGP4 37932450
    848591 8oev:B (2.86) BS02 dna 2.7.7.6 GO:0000781 ... I3LGP4 37932450
    848592 8oev:B (2.86) BS03 ZN 2.7.7.6 GO:0000781 ... I3LGP4 37932450
    848593 8oev:C (2.86) BS01 ZN ? GO:0003677 ... I3LCH3 37932450
    848594 8oev:E (2.86) BS01 dna ? GO:0003677 ... I3LSI7 37932450
    848595 8oev:I (2.86) BS01 ZN ? GO:0001193 ... P60899 37932450
    848596 8oev:I (2.86) BS02 ZN ? GO:0001193 ... P60899 37932450
    848597 8oev:J (2.86) BS01 ZN ? GO:0003677 ... A0A8W4F9W9 37932450
    848598 8oev:L (2.86) BS01 ZN ? GO:0001650 ... A0A4X1TRS6 37932450
    848599 8oew:A (2.8) BS01 dna 2.7.7.6 GO:0000974 ... P11414 37932450
    848600 8oew:A (2.8) BS02 rna 2.7.7.6 GO:0000974 ... P11414 37932450
    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).