SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    849001 8ove:Bw (2.6) BS02 rna ? GO:0000463 ... Q57V35 37985661
    849002 8ove:Bx (2.6) BS01 rna ? GO:0000470 ... Q57VM1 37985661
    849003 8ove:Bx (2.6) BS02 rna ? GO:0000470 ... Q57VM1 37985661
    849004 8ove:Bx (2.6) BS03 rna ? GO:0000470 ... Q57VM1 37985661
    849005 8ove:By (2.6) BS01 rna ? GO:0002181 ... Q38CD0 37985661
    849006 8ove:By (2.6) BS02 rna ? GO:0002181 ... Q38CD0 37985661
    849007 8ove:By (2.6) BS03 rna ? GO:0002181 ... Q38CD0 37985661
    849008 8ove:Bz (2.6) BS01 rna N/A GO:0003735 ... N/A 37985661
    849009 8ove:Bz (2.6) BS02 rna N/A GO:0003735 ... N/A 37985661
    849010 8ovf:A (7.23) BS01 ADP 3.4.21.53 GO:0004176 ... P36776 38688959
    849011 8ovf:B (7.23) BS01 ADP 3.4.21.53 GO:0004176 ... P36776 38688959
    849012 8ovf:C (7.23) BS01 ADP 3.4.21.53 GO:0004176 ... P36776 38688959
    849013 8ovf:D (7.23) BS01 ADP 3.4.21.53 GO:0004176 ... P36776 38688959
    849014 8ovf:E (7.23) BS01 ADP 3.4.21.53 GO:0004176 ... P36776 38688959
    849015 8ovf:F (7.23) BS01 ADP 3.4.21.53 GO:0004176 ... P36776 38688959
    849016 8ovh:A (2.171) BS01 PLP 2.5.1.47
    2.5.1.49
    GO:0000103 ... P06106 37235813
    849017 8ovh:B (2.171) BS01 PLP 2.5.1.47
    2.5.1.49
    GO:0000103 ... P06106 37235813
    849018 8ovh:C (2.171) BS01 PLP 2.5.1.47
    2.5.1.49
    GO:0000103 ... P06106 37235813
    849019 8ovh:D (2.171) BS01 PLP 2.5.1.47
    2.5.1.49
    GO:0000103 ... P06106 37235813
    849020 8ovj:A (2.4) BS01 rna ? GO:0002181 ... Q4FWX5 38722744
    849021 8ovj:A (2.4) BS02 rna ? GO:0002181 ... Q4FWX5 38722744
    849022 8ovj:A (2.4) BS03 rna ? GO:0002181 ... Q4FWX5 38722744
    849023 8ovj:A (2.4) BS04 rna ? GO:0002181 ... Q4FWX5 38722744
    849024 8ovj:B (2.4) BS01 rna ? GO:0003723 ... Q4Q2Q6 38722744
    849025 8ovj:B (2.4) BS02 rna ? GO:0003723 ... Q4Q2Q6 38722744
    849026 8ovj:B (2.4) BS03 rna ? GO:0003723 ... Q4Q2Q6 38722744
    849027 8ovj:B (2.4) BS04 rna ? GO:0003723 ... Q4Q2Q6 38722744
    849028 8ovj:C (2.4) BS01 rna ? GO:0003723 ... E9ADW5 38722744
    849029 8ovj:C (2.4) BS02 rna ? GO:0003723 ... E9ADW5 38722744
    849030 8ovj:C (2.4) BS03 rna ? GO:0003723 ... E9ADW5 38722744
    849031 8ovj:D (2.4) BS01 rna ? GO:0003723 ... P48157 38722744
    849032 8ovj:D (2.4) BS02 rna ? GO:0003723 ... P48157 38722744
    849033 8ovj:E (2.4) BS01 rna ? GO:0002181 ... Q4QC91 38722744
    849034 8ovj:E (2.4) BS02 rna ? GO:0002181 ... Q4QC91 38722744
    849035 8ovj:E (2.4) BS03 rna ? GO:0002181 ... Q4QC91 38722744
    849036 8ovj:F (2.4) BS01 rna ? GO:0002181 ... Q4Q4D3 38722744
    849037 8ovj:F (2.4) BS02 rna ? GO:0002181 ... Q4Q4D3 38722744
    849038 8ovj:G (2.4) BS01 rna ? GO:0000470 ... Q4QIP1 38722744
    849039 8ovj:G (2.4) BS02 rna ? GO:0000470 ... Q4QIP1 38722744
    849040 8ovj:G (2.4) BS03 rna ? GO:0000470 ... Q4QIP1 38722744
    849041 8ovj:H (2.4) BS01 rna ? GO:0003729 ... Q4QFG2 38722744
    849042 8ovj:H (2.4) BS02 rna ? GO:0003729 ... Q4QFG2 38722744
    849043 8ovj:H (2.4) BS03 rna ? GO:0003729 ... Q4QFG2 38722744
    849044 8ovj:H (2.4) BS04 rna ? GO:0003729 ... Q4QFG2 38722744
    849045 8ovj:I (2.4) BS01 rna ? GO:0003723 ... E9AEA8 38722744
    849046 8ovj:I (2.4) BS02 rna ? GO:0003723 ... E9AEA8 38722744
    849047 8ovj:J (2.4) BS01 rna ? GO:0003735 ... E9AFK3 38722744
    849048 8ovj:J (2.4) BS02 rna ? GO:0003735 ... E9AFK3 38722744
    849049 8ovj:K (2.4) BS01 rna ? GO:0003723 ... Q4QBJ1 38722744
    849050 8ovj:K (2.4) BS02 rna ? GO:0003723 ... Q4QBJ1 38722744
    849051 8ovj:K (2.4) BS03 rna ? GO:0003723 ... Q4QBJ1 38722744
    849052 8ovj:L (2.4) BS01 rna ? GO:0003735 ... E9AFK0 38722744
    849053 8ovj:L (2.4) BS02 rna ? GO:0003735 ... E9AFK0 38722744
    849054 8ovj:M (2.4) BS01 rna ? GO:0002181 ... Q4Q6S3 38722744
    849055 8ovj:M (2.4) BS02 rna ? GO:0002181 ... Q4Q6S3 38722744
    849056 8ovj:M (2.4) BS03 rna ? GO:0002181 ... Q4Q6S3 38722744
    849057 8ovj:M (2.4) BS04 MG ? GO:0002181 ... Q4Q6S3 38722744
    849058 8ovj:N (2.4) BS01 rna ? GO:0003735 ... O97213 38722744
    849059 8ovj:N (2.4) BS02 rna ? GO:0003735 ... O97213 38722744
    849060 8ovj:N (2.4) BS03 rna ? GO:0003735 ... O97213 38722744
    849061 8ovj:O (2.4) BS01 rna ? GO:0000027 ... E9AF09 38722744
    849062 8ovj:O (2.4) BS02 rna ? GO:0000027 ... E9AF09 38722744
    849063 8ovj:O (2.4) BS03 rna ? GO:0000027 ... E9AF09 38722744
    849064 8ovj:P (2.4) BS01 rna ? GO:0003723 ... Q4QG98 38722744
    849065 8ovj:P (2.4) BS02 rna ? GO:0003723 ... Q4QG98 38722744
    849066 8ovj:Q (2.4) BS01 rna ? GO:0003723 ... Q4QJ37 38722744
    849067 8ovj:Q (2.4) BS02 rna ? GO:0003723 ... Q4QJ37 38722744
    849068 8ovj:Q (2.4) BS03 rna ? GO:0003723 ... Q4QJ37 38722744
    849069 8ovj:Q (2.4) BS04 rna ? GO:0003723 ... Q4QJ37 38722744
    849070 8ovj:Q (2.4) BS05 rna ? GO:0003723 ... Q4QJ37 38722744
    849071 8ovj:R (2.4) BS01 rna ? GO:0002181 ... Q4Q5J4 38722744
    849072 8ovj:R (2.4) BS02 rna ? GO:0002181 ... Q4Q5J4 38722744
    849073 8ovj:R (2.4) BS03 rna ? GO:0002181 ... Q4Q5J4 38722744
    849074 8ovj:S (2.4) BS01 rna ? GO:0003735 ... Q4QEX4 38722744
    849075 8ovj:S (2.4) BS02 rna ? GO:0003735 ... Q4QEX4 38722744
    849076 8ovj:S (2.4) BS03 rna ? GO:0003735 ... Q4QEX4 38722744
    849077 8ovj:SA (2.4) BS01 rna ? GO:0003735 ... Q4FX73 38722744
    849078 8ovj:SB (2.4) BS01 rna ? GO:0000028 ... Q4Q0Q0 38722744
    849079 8ovj:SC (2.4) BS01 rna ? GO:0003723 ... Q4Q4A0 38722744
    849080 8ovj:SD (2.4) BS01 rna ? GO:0003723 ... Q4QIM3 38722744
    849081 8ovj:SE (2.4) BS01 rna ? GO:0003723 ... Q4QG31 38722744
    849082 8ovj:SF (2.4) BS01 rna ? GO:0003723 ... Q4QDL5 38722744
    849083 8ovj:SG (2.4) BS01 rna ? GO:0003735 ... Q9NE83 38722744
    849084 8ovj:SH (2.4) BS01 rna ? GO:0000028 ... Q868B1 38722744
    849085 8ovj:SH (2.4) BS02 MG ? GO:0000028 ... Q868B1 38722744
    849086 8ovj:SI (2.4) BS01 rna ? GO:0003735 ... E9AC32 38722744
    849087 8ovj:SJ (2.4) BS01 rna ? GO:0003735 ... Q4QGW3 38722744
    849088 8ovj:SK (2.4) BS01 rna ? GO:0000462 ... P25204 38722744
    849089 8ovj:SL (2.4) BS01 rna ? GO:0000462 ... Q4Q9A5 38722744
    849090 8ovj:SM (2.4) BS01 rna ? GO:0003735 ... Q4Q8G4 38722744
    849091 8ovj:SN (2.4) BS01 rna ? GO:0003723 ... Q4Q1X7 38722744
    849092 8ovj:SO (2.4) BS01 rna ? GO:0000028 ... Q4Q8H1 38722744
    849093 8ovj:SP (2.4) BS01 rna ? GO:0003735 ... Q4QC89 38722744
    849094 8ovj:SQ (2.4) BS01 rna ? GO:0003735 ... Q4QG97 38722744
    849095 8ovj:SR (2.4) BS01 rna ? GO:0003676 ... Q4Q1Y3 38722744
    849096 8ovj:SS (2.4) BS01 rna ? GO:0002181 ... Q4Q817 38722744
    849097 8ovj:SS (2.4) BS02 ZN ? GO:0002181 ... Q4Q817 38722744
    849098 8ovj:SS (2.4) BS03 MG ? GO:0002181 ... Q4Q817 38722744
    849099 8ovj:ST (2.4) BS01 rna ? GO:0003735 ... Q4Q3M1 38722744
    849100 8ovj:SU (2.4) BS01 rna N/A GO:0003735 ... N/A 38722744
    849101 8ovj:SV (2.4) BS01 rna ? GO:0003735 ... Q4Q806 38722744
    849102 8ovj:SW (2.4) BS01 rna ? GO:0000028 ... Q4QBV0 38722744
    849103 8ovj:SX (2.4) BS01 rna ? GO:0000028 ... E9AEE8 38722744
    849104 8ovj:SX (2.4) BS02 MG ? GO:0000028 ... E9AEE8 38722744
    849105 8ovj:SZ (2.4) BS01 rna ? GO:0003735 ... Q4Q1D2 38722744
    849106 8ovj:Sa (2.4) BS01 rna ? GO:0003735 ... Q4Q9X4 38722744
    849107 8ovj:Sb (2.4) BS01 rna ? GO:0003729 ... Q4Q8L6 38722744
    849108 8ovj:Sb (2.4) BS02 ZN ? GO:0003729 ... Q4Q8L6 38722744
    849109 8ovj:Sc (2.4) BS01 rna ? GO:0000028 ... Q4Q140 38722744
    849110 8ovj:Sd (2.4) BS01 rna ? GO:0000028 ... Q4Q931 38722744
    849111 8ovj:Se (2.4) BS01 rna ? GO:0003735 ... Q4Q7P0 38722744
    849112 8ovj:Sg (2.4) BS01 rna ? GO:0005080 ... Q4Q7Y7 38722744
    849113 8ovj:Sh (2.4) BS01 rna ? GO:0003676 ... Q4Q5K7 38722744
    849114 8ovj:T (2.4) BS01 rna ? GO:0002181 ... Q4QAX6 38722744
    849115 8ovj:T (2.4) BS02 rna ? GO:0002181 ... Q4QAX6 38722744
    849116 8ovj:T (2.4) BS03 rna ? GO:0002181 ... Q4QAX6 38722744
    849117 8ovj:T (2.4) BS04 rna ? GO:0002181 ... Q4QAX6 38722744
    849118 8ovj:U (2.4) BS01 rna ? GO:0002181 ... Q4Q0X2 38722744
    849119 8ovj:U (2.4) BS02 rna ? GO:0002181 ... Q4Q0X2 38722744
    849120 8ovj:U (2.4) BS03 rna ? GO:0002181 ... Q4Q0X2 38722744
    849121 8ovj:V (2.4) BS01 rna ? GO:0003735 ... Q4QJ20 38722744
    849122 8ovj:V (2.4) BS02 rna ? GO:0003735 ... Q4QJ20 38722744
    849123 8ovj:V (2.4) BS03 rna ? GO:0003735 ... Q4QJ20 38722744
    849124 8ovj:W (2.4) BS01 rna ? GO:0002181 ... Q4QAC5 38722744
    849125 8ovj:W (2.4) BS02 rna ? GO:0002181 ... Q4QAC5 38722744
    849126 8ovj:X (2.4) BS01 rna ? GO:0002181 ... Q4Q1W6 38722744
    849127 8ovj:X (2.4) BS02 rna ? GO:0002181 ... Q4Q1W6 38722744
    849128 8ovj:Y (2.4) BS01 rna ? GO:0003735 ... Q4Q504 38722744
    849129 8ovj:Y (2.4) BS02 rna ? GO:0003735 ... Q4Q504 38722744
    849130 8ovj:Z (2.4) BS01 rna ? GO:0003735 ... Q4QGW7 38722744
    849131 8ovj:a (2.4) BS01 rna ? GO:0000463 ... Q4Q8V7 38722744
    849132 8ovj:a (2.4) BS02 rna ? GO:0000463 ... Q4Q8V7 38722744
    849133 8ovj:b (2.4) BS01 rna ? GO:0002181 ... Q4Q178 38722744
    849134 8ovj:b (2.4) BS02 rna ? GO:0002181 ... Q4Q178 38722744
    849135 8ovj:c (2.4) BS01 rna ? GO:0000463 ... Q4Q9H4 38722744
    849136 8ovj:c (2.4) BS02 rna ? GO:0000463 ... Q4Q9H4 38722744
    849137 8ovj:d (2.4) BS01 rna ? GO:0003723 ... E9AEK1 38722744
    849138 8ovj:e (2.4) BS01 rna ? GO:0002181 ... E9AFF2 38722744
    849139 8ovj:e (2.4) BS02 rna ? GO:0002181 ... E9AFF2 38722744
    849140 8ovj:e (2.4) BS03 rna ? GO:0002181 ... E9AFF2 38722744
    849141 8ovj:e (2.4) BS04 rna ? GO:0002181 ... E9AFF2 38722744
    849142 8ovj:f (2.4) BS01 rna ? GO:0003735 ... Q4QC11 38722744
    849143 8ovj:g (2.4) BS01 rna ? GO:0002181 ... Q4QHL3 38722744
    849144 8ovj:g (2.4) BS02 rna ? GO:0002181 ... Q4QHL3 38722744
    849145 8ovj:g (2.4) BS03 rna ? GO:0002181 ... Q4QHL3 38722744
    849146 8ovj:h (2.4) BS01 rna ? GO:0003735 ... Q4QDP9 38722744
    849147 8ovj:h (2.4) BS02 rna ? GO:0003735 ... Q4QDP9 38722744
    849148 8ovj:h (2.4) BS03 rna ? GO:0003735 ... Q4QDP9 38722744
    849149 8ovj:i (2.4) BS01 rna ? GO:0002181 ... Q4QCE1 38722744
    849150 8ovj:i (2.4) BS02 rna ? GO:0002181 ... Q4QCE1 38722744
    849151 8ovj:j (2.4) BS01 rna ? GO:0003723 ... E9AEH2 38722744
    849152 8ovj:j (2.4) BS02 rna ? GO:0003723 ... E9AEH2 38722744
    849153 8ovj:j (2.4) BS03 rna ? GO:0003723 ... E9AEH2 38722744
    849154 8ovj:j (2.4) BS04 ZN ? GO:0003723 ... E9AEH2 38722744
    849155 8ovj:k (2.4) BS01 rna ? GO:0003735 ... Q4Q8X0 38722744
    849156 8ovj:k (2.4) BS02 rna ? GO:0003735 ... Q4Q8X0 38722744
    849157 8ovj:k (2.4) BS03 rna ? GO:0003735 ... Q4Q8X0 38722744
    849158 8ovj:l (2.4) BS01 rna ? GO:0003735 ... Q4QEQ0 38722744
    849159 8ovj:l (2.4) BS02 rna ? GO:0003735 ... Q4QEQ0 38722744
    849160 8ovj:l (2.4) BS03 rna ? GO:0003735 ... Q4QEQ0 38722744
    849161 8ovj:m (2.4) BS01 rna ? GO:0003735 ... P69201 38722744
    849162 8ovj:m (2.4) BS02 rna ? GO:0003735 ... P69201 38722744
    849163 8ovj:m (2.4) BS03 rna ? GO:0003735 ... P69201 38722744
    849164 8ovj:n (2.4) BS01 rna N/A GO:0003735 ... N/A 38722744
    849165 8ovj:o (2.4) BS01 rna ? GO:0003735 ... Q4QC01 38722744
    849166 8ovj:o (2.4) BS02 rna ? GO:0003735 ... Q4QC01 38722744
    849167 8ovj:o (2.4) BS03 rna ? GO:0003735 ... Q4QC01 38722744
    849168 8ovj:o (2.4) BS04 ZN ? GO:0003735 ... Q4QC01 38722744
    849169 8ovj:p (2.4) BS01 rna ? GO:0003735 ... Q4Q3L3 38722744
    849170 8ovj:p (2.4) BS02 rna ? GO:0003735 ... Q4Q3L3 38722744
    849171 8ovj:p (2.4) BS03 rna ? GO:0003735 ... Q4Q3L3 38722744
    849172 8ovj:p (2.4) BS04 ZN ? GO:0003735 ... Q4Q3L3 38722744
    849173 8ovo:A (1.7) BS01 ASP ? GO:0005576 ... P37902
    P42212
    N/A
    849174 8ovo:B (1.7) BS01 ASP ? GO:0005576 ... P37902
    P42212
    N/A
    849175 8ovp:A (1.7) BS01 ASP ? GO:0005576 ... P37902
    P42212
    N/A
    849176 8ovp:B (1.7) BS01 ASP ? GO:0005576 ... P37902
    P42212
    N/A
    849177 8ovr:A (1.6) BS01 PIN ? GO:0005975 ... F8UNI4 39283899
    849178 8ovs:AAA (1.123) BS01 UDP N/A N/A N/A 38703997
    849179 8ovs:AAA (1.123) BS02 MN N/A N/A N/A 38703997
    849180 8ovs:BBB (1.123) BS01 UDP N/A N/A N/A 38703997
    849181 8ovs:BBB (1.123) BS02 MN N/A N/A N/A 38703997
    849182 8ovv:A (2.26) BS01 B12 ? GO:0016020 ... Q3SFD8 N/A
    849183 8ovw:A (3.4) BS01 dna ? GO:0000122 ... P17106 37506202
    849184 8ovw:A (3.4) BS02 dna ? GO:0000122 ... P17106 37506202
    849185 8ovw:B (3.4) BS01 dna ? GO:0000122 ... P17106 37506202
    849186 8ovw:B (3.4) BS02 dna ? GO:0000122 ... P17106 37506202
    849187 8ovw:I (3.4) BS01 dna ? GO:0000775 ... Q12748 37506202
    849188 8ovw:L (3.4) BS01 dna ? GO:0000775 ... P38265 37506202
    849189 8ovw:N (3.4) BS01 dna ? GO:0000775 ... P38907 37506202
    849190 8ovw:N (3.4) BS02 dna ? GO:0000775 ... P38907 37506202
    849191 8ovz:A (2.206) BS01 W3N 2.7.10.1 GO:0004672 ... P08581 37343272
    849192 8ovz:B (2.206) BS01 W3N 2.7.10.1 GO:0004672 ... P08581 37343272
    849193 8ow0:A (3.4) BS01 dna ? GO:0000122 ... P17106 37506202
    849194 8ow0:A (3.4) BS02 dna ? GO:0000122 ... P17106 37506202
    849195 8ow0:B (3.4) BS01 dna ? GO:0000122 ... P17106 37506202
    849196 8ow0:B (3.4) BS02 dna ? GO:0000122 ... P17106 37506202
    849197 8ow0:a (3.4) BS01 dna ? GO:0000070 ... P36012 37506202
    849198 8ow0:a (3.4) BS02 dna ? GO:0000070 ... P36012 37506202
    849199 8ow0:b (3.4) BS01 dna ? GO:0000500 ... P02309 37506202
    849200 8ow0:b (3.4) BS02 dna ? GO:0000500 ... P02309 37506202

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).