SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    849601 8oyk:C (1.9) BS01 peptide ? N/A Q15468 37834064
    849602 8oyk:F (1.9) BS01 peptide ? N/A Q15468 37834064
    849603 8oyq:A (1.8) BS01 W6T 2.7.13.3 GO:0016310 ... Q56310 N/A
    849604 8oyq:B (1.8) BS01 W6T 2.7.13.3 GO:0016310 ... Q56310 N/A
    849605 8oyz:A (1.85) BS01 WXC 2.7.13.3 GO:0016310 ... Q56310 N/A
    849606 8oyz:B (1.85) BS01 WXC 2.7.13.3 GO:0016310 ... Q56310 N/A
    849607 8oz0:D (3.5) BS01 rna ? GO:0000423 ... P05198 38287194
    849608 8oz0:D (3.5) BS02 rna ? GO:0000423 ... P05198 38287194
    849609 8oz0:E (3.5) BS01 rna 3.6.5.3 GO:0000049 ... P41091 38287194
    849610 8oz0:G (3.5) BS01 rna ? GO:0000049 ... P47813 38287194
    849611 8oz0:G (3.5) BS02 rna ? GO:0000049 ... P47813 38287194
    849612 8oz0:H (3.5) BS01 rna ? GO:0001732 ... P55010 38287194
    849613 8oz0:H (3.5) BS02 rna ? GO:0001732 ... P55010 38287194
    849614 8oz0:I (3.5) BS01 rna ? GO:0001732 ... P55884 38287194
    849615 8oz0:J (3.5) BS01 rna ? GO:0001732 ... Q99613 38287194
    849616 8oz0:J (3.5) BS02 rna ? GO:0001732 ... Q99613 38287194
    849617 8oz0:L (3.5) BS01 rna ? GO:0001843 ... P62081 38287194
    849618 8oz0:M (3.5) BS01 rna ? GO:0000028 ... P42677 38287194
    849619 8oz0:O (3.5) BS01 rna ? GO:0002181 ... P15880 38287194
    849620 8oz0:P (3.5) BS01 rna ? GO:0002181 ... P61247 38287194
    849621 8oz0:Q (3.5) BS01 rna ? GO:0000028 ... P08865 38287194
    849622 8oz0:R (3.5) BS01 rna ? GO:0002181 ... P62854 38287194
    849623 8oz0:R (3.5) BS02 rna ? GO:0002181 ... P62854 38287194
    849624 8oz0:R (3.5) BS03 ZN ? GO:0002181 ... P62854 38287194
    849625 8oz0:S (3.5) BS01 rna ? GO:0000082 ... P62753 38287194
    849626 8oz0:T (3.5) BS01 rna ? GO:0000028 ... P62263 38287194
    849627 8oz0:U (3.5) BS01 rna ? GO:0001701 ... P20042 38287194
    849628 8oz0:V (3.5) BS01 rna ? GO:0002181 ... P62277 38287194
    849629 8oz0:X (3.5) BS01 rna ? GO:0002181 ... P62280 38287194
    849630 8oz0:Y (3.5) BS01 rna ? GO:0002181 ... P62701 38287194
    849631 8oz0:Z (3.5) BS01 rna ? GO:0002181 ... P46781 38287194
    849632 8oz0:a (3.5) BS01 rna ? GO:0002181 ... P62266 38287194
    849633 8oz0:b (3.5) BS01 rna ? GO:0003735 ... P62861 38287194
    849634 8oz0:c (3.5) BS01 rna ? GO:0002181 ... P62244 38287194
    849635 8oz0:d (3.5) BS01 rna ? GO:0000462 ... P62241 38287194
    849636 8oz0:e (3.5) BS01 rna ? GO:0002181 ... P62847 38287194
    849637 8oz0:f (3.5) BS01 rna ? GO:0000028 ... P46782 38287194
    849638 8oz0:f (3.5) BS02 MG ? GO:0000028 ... P46782 38287194
    849639 8oz0:g (3.5) BS01 rna ? GO:0000462 ... P62249 38287194
    849640 8oz0:h (3.5) BS01 rna 4.2.99.18 GO:0000977 ... P23396 38287194
    849641 8oz0:h (3.5) BS02 rna 4.2.99.18 GO:0000977 ... P23396 38287194
    849642 8oz0:i (3.5) BS01 rna ? GO:0002181 ... P46783 38287194
    849643 8oz0:j (3.5) BS01 rna ? GO:0000028 ... P62841 38287194
    849644 8oz0:k (3.5) BS01 rna ? GO:0001891 ... P63244 38287194
    849645 8oz0:l (3.5) BS01 rna ? GO:0000028 ... P39019 38287194
    849646 8oz0:m (3.5) BS01 rna ? GO:0002181 ... P62851 38287194
    849647 8oz0:n (3.5) BS01 rna ? GO:0002181 ... P62269 38287194
    849648 8oz0:o (3.5) BS01 rna ? GO:0002181 ... P62273 38287194
    849649 8oz0:p (3.5) BS01 rna ? GO:0002181 ... P62979 38287194
    849650 8oz0:p (3.5) BS02 ZN ? GO:0002181 ... P62979 38287194
    849651 8oz0:q (3.5) BS01 rna ? GO:0002181 ... P25398 38287194
    849652 8oz0:s (3.5) BS01 rna ? GO:0000028 ... P62857 38287194
    849653 8oz0:v (3.5) BS01 rna ? GO:0002181 ... P08708 38287194
    849654 8oz0:w (3.5) BS01 rna ? GO:0002181 ... P60866 38287194
    849655 8oz1:A (1.3) BS01 RBH 3.2.1.4 GO:0000272 ... B3PD52 38161374
    849656 8oz1:A (1.3) BS02 YLL 3.2.1.4 GO:0000272 ... B3PD52 38161374
    849657 8oz2:A (1.04) BS01 NAP 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54
    GO:0001523 ... P15121 N/A
    849658 8oz2:A (1.04) BS02 30L 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54
    GO:0001523 ... P15121 N/A
    849659 8oz5:A (2.04) BS01 BYN N/A GO:0005737 ... A0A193DUB4 N/A
    849660 8oz5:A (2.04) BS02 WC8 N/A GO:0005737 ... A0A193DUB4 N/A
    849661 8oz5:A (2.04) BS03 FE N/A GO:0005737 ... A0A193DUB4 N/A
    849662 8oz5:A (2.04) BS04 FE N/A GO:0005737 ... A0A193DUB4 N/A
    849663 8oz5:A (2.04) BS05 CA N/A GO:0005737 ... A0A193DUB4 N/A
    849664 8oz5:B (2.04) BS01 BYN N/A GO:0005737 ... A0A193DUB4 N/A
    849665 8oz5:B (2.04) BS02 WC8 N/A GO:0005737 ... A0A193DUB4 N/A
    849666 8oz5:B (2.04) BS03 FE N/A GO:0005737 ... A0A193DUB4 N/A
    849667 8oz5:B (2.04) BS04 FE N/A GO:0005737 ... A0A193DUB4 N/A
    849668 8oz5:B (2.04) BS05 CA N/A GO:0005737 ... A0A193DUB4 N/A
    849669 8oz5:C (2.04) BS01 BYN N/A GO:0005737 ... A0A193DUB4 N/A
    849670 8oz5:C (2.04) BS02 WC8 N/A GO:0005737 ... A0A193DUB4 N/A
    849671 8oz5:C (2.04) BS03 FE N/A GO:0005737 ... A0A193DUB4 N/A
    849672 8oz5:C (2.04) BS04 FE N/A GO:0005737 ... A0A193DUB4 N/A
    849673 8oz5:C (2.04) BS05 CA N/A GO:0005737 ... A0A193DUB4 N/A
    849674 8oz5:D (2.04) BS01 BYN N/A GO:0005737 ... A0A193DUB4 N/A
    849675 8oz5:D (2.04) BS02 WC8 N/A GO:0005737 ... A0A193DUB4 N/A
    849676 8oz5:D (2.04) BS03 FE N/A GO:0005737 ... A0A193DUB4 N/A
    849677 8oz5:D (2.04) BS04 FE N/A GO:0005737 ... A0A193DUB4 N/A
    849678 8oz5:D (2.04) BS05 CA N/A GO:0005737 ... A0A193DUB4 N/A
    849679 8oz5:E (2.04) BS01 BYN N/A GO:0005737 ... A0A193DUB4 N/A
    849680 8oz5:E (2.04) BS02 WC8 N/A GO:0005737 ... A0A193DUB4 N/A
    849681 8oz5:E (2.04) BS03 FE N/A GO:0005737 ... A0A193DUB4 N/A
    849682 8oz5:E (2.04) BS04 FE N/A GO:0005737 ... A0A193DUB4 N/A
    849683 8oz5:E (2.04) BS05 CA N/A GO:0005737 ... A0A193DUB4 N/A
    849684 8oz5:F (2.04) BS01 BYN N/A GO:0005737 ... A0A193DUB4 N/A
    849685 8oz5:F (2.04) BS02 WC8 N/A GO:0005737 ... A0A193DUB4 N/A
    849686 8oz5:F (2.04) BS03 FE N/A GO:0005737 ... A0A193DUB4 N/A
    849687 8oz5:F (2.04) BS04 FE N/A GO:0005737 ... A0A193DUB4 N/A
    849688 8oz5:F (2.04) BS05 CA N/A GO:0005737 ... A0A193DUB4 N/A
    849689 8oz6:A (3.97) BS01 rna ? GO:0007165 ... A0A316E683 37467330
    849690 8oz6:A (3.97) BS02 dna ? GO:0007165 ... A0A316E683 37467330
    849691 8oz6:B (3.97) BS01 rna ? GO:0003676 ... A0A316E3U6 37467330
    849692 8oz6:B (3.97) BS02 dna ? GO:0003676 ... A0A316E3U6 37467330
    849693 8oz6:C (3.97) BS01 rna ? GO:0007165 ... A0A316E683 37467330
    849694 8oz6:C (3.97) BS02 dna ? GO:0007165 ... A0A316E683 37467330
    849695 8oz6:D (3.97) BS01 rna ? GO:0003676 ... A0A316E3U6 37467330
    849696 8oz6:D (3.97) BS02 dna ? GO:0003676 ... A0A316E3U6 37467330
    849697 8oz6:E (3.97) BS01 rna ? GO:0007165 ... A0A316E683 37467330
    849698 8oz6:E (3.97) BS02 dna ? GO:0007165 ... A0A316E683 37467330
    849699 8oz6:F (3.97) BS01 rna ? GO:0003676 ... A0A316E3U6 37467330
    849700 8oz6:F (3.97) BS02 dna ? GO:0003676 ... A0A316E3U6 37467330
    849701 8oz6:G (3.97) BS01 rna ? GO:0007165 ... A0A316E683 37467330
    849702 8oz6:G (3.97) BS02 dna ? GO:0007165 ... A0A316E683 37467330
    849703 8oz6:H (3.97) BS01 rna ? GO:0003676 ... A0A316E3U6 37467330
    849704 8oz6:H (3.97) BS02 dna ? GO:0003676 ... A0A316E3U6 37467330
    849705 8oz7:A (2.75) BS01 dna ? GO:0046872 ... Q48596 38587192
    849706 8oz7:B (2.75) BS01 dna ? GO:0046872 ... Q48596 38587192
    849707 8oz7:C (2.75) BS01 dna ? GO:0046872 ... Q48596 38587192
    849708 8oz7:D (2.75) BS01 dna ? GO:0046872 ... Q48596 38587192
    849709 8oz8:A (1.85) BS01 NM2 4.1.2.10 GO:0016829 ... E8WYN5 N/A
    849710 8oz8:A (1.85) BS02 MN 4.1.2.10 GO:0016829 ... E8WYN5 N/A
    849711 8oz8:B (1.85) BS01 NM2 4.1.2.10 GO:0016829 ... E8WYN5 N/A
    849712 8oz8:B (1.85) BS02 MN 4.1.2.10 GO:0016829 ... E8WYN5 N/A
    849713 8oz8:C (1.85) BS01 NM2 4.1.2.10 GO:0016829 ... E8WYN5 N/A
    849714 8oz8:C (1.85) BS02 MN 4.1.2.10 GO:0016829 ... E8WYN5 N/A
    849715 8oz8:D (1.85) BS01 NM2 4.1.2.10 GO:0016829 ... E8WYN5 N/A
    849716 8oz8:D (1.85) BS02 MN 4.1.2.10 GO:0016829 ... E8WYN5 N/A
    849717 8oz9:A (1.4) BS01 W6E 2.7.13.3 GO:0016310 ... Q56310 N/A
    849718 8oz9:B (1.4) BS01 W6E 2.7.13.3 GO:0016310 ... Q56310 N/A
    849719 8oza:A (1.8) BS01 WRH 3.4.22.15 GO:0006508 ... P07711 38630165
    849720 8oza:B (1.8) BS01 WRH 3.4.22.15 GO:0006508 ... P07711 38630165
    849721 8oza:C (1.8) BS01 WRH 3.4.22.15 GO:0006508 ... P07711 38630165
    849722 8oza:D (1.8) BS01 WRH 3.4.22.15 GO:0006508 ... P07711 38630165
    849723 8ozd:A (3.89) BS01 rna ? GO:0007165 ... A0A316E683 37467330
    849724 8ozd:A (3.89) BS02 dna ? GO:0007165 ... A0A316E683 37467330
    849725 8ozd:B (3.89) BS01 rna ? GO:0003676 ... A0A316E3U6 37467330
    849726 8ozd:B (3.89) BS02 dna ? GO:0003676 ... A0A316E3U6 37467330
    849727 8ozd:C (3.89) BS01 rna ? GO:0007165 ... A0A316E683 37467330
    849728 8ozd:C (3.89) BS02 dna ? GO:0007165 ... A0A316E683 37467330
    849729 8ozd:D (3.89) BS01 rna ? GO:0003676 ... A0A316E3U6 37467330
    849730 8ozd:D (3.89) BS02 dna ? GO:0003676 ... A0A316E3U6 37467330
    849731 8oze:E (2.91) BS01 rna ? GO:0007165 ... A0A316E683 37467330
    849732 8oze:E (2.91) BS02 dna ? GO:0007165 ... A0A316E683 37467330
    849733 8oze:F (2.91) BS01 rna ? GO:0003676 ... A0A316E3U6 37467330
    849734 8oze:F (2.91) BS02 dna ? GO:0003676 ... A0A316E3U6 37467330
    849735 8oze:G (2.91) BS01 rna ? GO:0007165 ... A0A316E683 37467330
    849736 8oze:G (2.91) BS02 dna ? GO:0007165 ... A0A316E683 37467330
    849737 8oze:H (2.91) BS01 rna ? GO:0003676 ... A0A316E3U6 37467330
    849738 8oze:H (2.91) BS02 dna ? GO:0003676 ... A0A316E3U6 37467330
    849739 8ozf:A (3.73) BS01 rna ? GO:0007165 ... A0A316E683 37467330
    849740 8ozf:A (3.73) BS02 dna ? GO:0007165 ... A0A316E683 37467330
    849741 8ozf:A (3.73) BS03 AR6 ? GO:0007165 ... A0A316E683 37467330
    849742 8ozf:B (3.73) BS01 rna ? GO:0003676 ... A0A316E3U6 37467330
    849743 8ozf:B (3.73) BS02 dna ? GO:0003676 ... A0A316E3U6 37467330
    849744 8ozf:C (3.73) BS01 rna ? GO:0007165 ... A0A316E683 37467330
    849745 8ozf:C (3.73) BS02 dna ? GO:0007165 ... A0A316E683 37467330
    849746 8ozf:C (3.73) BS03 AR6 ? GO:0007165 ... A0A316E683 37467330
    849747 8ozf:E (3.73) BS01 rna ? GO:0003676 ... A0A316E3U6 37467330
    849748 8ozf:E (3.73) BS02 dna ? GO:0003676 ... A0A316E3U6 37467330
    849749 8ozf:F (3.73) BS01 rna ? GO:0007165 ... A0A316E683 37467330
    849750 8ozf:F (3.73) BS02 dna ? GO:0007165 ... A0A316E683 37467330
    849751 8ozf:F (3.73) BS03 AR6 ? GO:0007165 ... A0A316E683 37467330
    849752 8ozf:G (3.73) BS01 rna ? GO:0003676 ... A0A316E3U6 37467330
    849753 8ozf:G (3.73) BS02 dna ? GO:0003676 ... A0A316E3U6 37467330
    849754 8ozf:H (3.73) BS01 rna ? GO:0007165 ... A0A316E683 37467330
    849755 8ozf:H (3.73) BS02 dna ? GO:0007165 ... A0A316E683 37467330
    849756 8ozf:H (3.73) BS03 AR6 ? GO:0007165 ... A0A316E683 37467330
    849757 8ozf:M (3.73) BS01 rna ? GO:0003676 ... A0A316E3U6 37467330
    849758 8ozf:M (3.73) BS02 dna ? GO:0003676 ... A0A316E3U6 37467330
    849759 8ozg:A (3.37) BS01 rna ? GO:0007165 ... A0A316E683 37467330
    849760 8ozg:A (3.37) BS02 dna ? GO:0007165 ... A0A316E683 37467330
    849761 8ozg:A (3.37) BS03 AR6 ? GO:0007165 ... A0A316E683 37467330
    849762 8ozg:B (3.37) BS01 rna ? GO:0003676 ... A0A316E3U6 37467330
    849763 8ozg:B (3.37) BS02 dna ? GO:0003676 ... A0A316E3U6 37467330
    849764 8ozg:C (3.37) BS01 rna ? GO:0007165 ... A0A316E683 37467330
    849765 8ozg:C (3.37) BS02 dna ? GO:0007165 ... A0A316E683 37467330
    849766 8ozg:C (3.37) BS03 AR6 ? GO:0007165 ... A0A316E683 37467330
    849767 8ozg:E (3.37) BS01 rna ? GO:0003676 ... A0A316E3U6 37467330
    849768 8ozg:E (3.37) BS02 dna ? GO:0003676 ... A0A316E3U6 37467330
    849769 8ozg:F (3.37) BS01 rna ? GO:0007165 ... A0A316E683 37467330
    849770 8ozg:F (3.37) BS02 dna ? GO:0007165 ... A0A316E683 37467330
    849771 8ozg:F (3.37) BS03 AR6 ? GO:0007165 ... A0A316E683 37467330
    849772 8ozg:G (3.37) BS01 rna ? GO:0003676 ... A0A316E3U6 37467330
    849773 8ozg:G (3.37) BS02 dna ? GO:0003676 ... A0A316E3U6 37467330
    849774 8ozg:H (3.37) BS01 rna ? GO:0007165 ... A0A316E683 37467330
    849775 8ozg:H (3.37) BS02 dna ? GO:0007165 ... A0A316E683 37467330
    849776 8ozg:H (3.37) BS03 AR6 ? GO:0007165 ... A0A316E683 37467330
    849777 8ozg:M (3.37) BS01 rna ? GO:0003676 ... A0A316E3U6 37467330
    849778 8ozg:M (3.37) BS02 dna ? GO:0003676 ... A0A316E3U6 37467330
    849779 8ozh:A (2.91) BS01 peptide N/A GO:0016020 ... A0A1Q1N9U9 39013471
    849780 8ozh:C (2.91) BS01 peptide N/A GO:0016020 ... A0A1Q1N9U9 39013471
    849781 8ozh:D (2.91) BS01 peptide N/A GO:0016020 ... A0A1Q1N9U9 39013471
    849782 8ozh:E (2.91) BS01 peptide N/A GO:0016020 ... A0A1Q1N9U9 39013471
    849783 8ozh:G (2.91) BS01 peptide N/A GO:0016020 ... A0A1Q1N9U9 39013471
    849784 8ozh:H (2.91) BS01 peptide N/A GO:0016020 ... A0A1Q1N9U9 39013471
    849785 8ozh:I (2.91) BS01 peptide N/A GO:0016020 ... A0A1Q1N9U9 39013471
    849786 8ozh:K (2.91) BS01 peptide N/A GO:0016020 ... A0A1Q1N9U9 39013471
    849787 8ozh:L (2.91) BS01 peptide N/A GO:0016020 ... A0A1Q1N9U9 39013471
    849788 8ozi:A (3.22) BS01 rna ? GO:0007165 ... A0A316E683 37467330
    849789 8ozi:A (3.22) BS02 dna ? GO:0007165 ... A0A316E683 37467330
    849790 8ozi:A (3.22) BS03 NAD ? GO:0007165 ... A0A316E683 37467330
    849791 8ozi:B (3.22) BS01 rna ? GO:0003676 ... A0A316E3U6 37467330
    849792 8ozi:B (3.22) BS02 dna ? GO:0003676 ... A0A316E3U6 37467330
    849793 8ozi:C (3.22) BS01 rna ? GO:0007165 ... A0A316E683 37467330
    849794 8ozi:C (3.22) BS02 dna ? GO:0007165 ... A0A316E683 37467330
    849795 8ozi:C (3.22) BS03 NAD ? GO:0007165 ... A0A316E683 37467330
    849796 8ozi:D (3.22) BS01 rna ? GO:0003676 ... A0A316E3U6 37467330
    849797 8ozi:D (3.22) BS02 dna ? GO:0003676 ... A0A316E3U6 37467330
    849798 8ozi:E (3.22) BS01 rna ? GO:0007165 ... A0A316E683 37467330
    849799 8ozi:E (3.22) BS02 dna ? GO:0007165 ... A0A316E683 37467330
    849800 8ozi:E (3.22) BS03 NAD ? GO:0007165 ... A0A316E683 37467330

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).