SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    849601 8oi5:o (2.9) BS01 rna N/A GO:0000463 ... A0A1D8PDL6 N/A
    849602 8oi5:o (2.9) BS02 rna N/A GO:0000463 ... A0A1D8PDL6 N/A
    849603 8oi5:p (2.9) BS01 rna N/A GO:0000470 ... Q5ANA1 N/A
    849604 8oi5:p (2.9) BS02 rna N/A GO:0000470 ... Q5ANA1 N/A
    849605 8oi5:q (2.9) BS01 rna N/A GO:0002181 ... Q5AEN2 N/A
    849606 8oi5:r (2.9) BS01 rna N/A GO:0003735 ... Q5AIB8 N/A
    849607 8oi5:r (2.9) BS02 rna N/A GO:0003735 ... Q5AIB8 N/A
    849608 8oi5:s (2.9) BS01 rna N/A GO:0003723 ... A0A1D8PHW1 N/A
    849609 8oi5:s (2.9) BS02 rna N/A GO:0003723 ... A0A1D8PHW1 N/A
    849610 8oi5:t (2.9) BS01 rna N/A GO:0003723 ... O59931 N/A
    849611 8oi5:t (2.9) BS02 rna N/A GO:0003723 ... O59931 N/A
    849612 8oi5:u (2.9) BS01 rna N/A GO:0003723 ... A0A1D8PFL9 N/A
    849613 8oi5:v (2.9) BS01 rna N/A GO:0002181 ... Q5A6R1 N/A
    849614 8oi5:v (2.9) BS02 rna N/A GO:0002181 ... Q5A6R1 N/A
    849615 8oi5:v (2.9) BS03 MG N/A GO:0002181 ... Q5A6R1 N/A
    849616 8oi5:v (2.9) BS04 MG N/A GO:0002181 ... Q5A6R1 N/A
    849617 8oi5:w (2.9) BS01 rna N/A GO:0003729 ... Q5AB87 N/A
    849618 8oi5:w (2.9) BS02 MG N/A GO:0003729 ... Q5AB87 N/A
    849619 8oi5:x (2.9) BS01 rna N/A GO:0002181 ... Q59TE0 N/A
    849620 8oi5:x (2.9) BS02 rna N/A GO:0002181 ... Q59TE0 N/A
    849621 8oi5:x (2.9) BS03 MG N/A GO:0002181 ... Q59TE0 N/A
    849622 8oi5:y (2.9) BS01 rna N/A GO:0002181 ... A0A1D8PK43 N/A
    849623 8oi5:z (2.9) BS01 rna N/A GO:0003723 ... A0A1D8PK40 N/A
    849624 8oi5:z (2.9) BS02 rna N/A GO:0003723 ... A0A1D8PK40 N/A
    849625 8oi6:A (3.59) BS01 peptide 3.6.4.- GO:0001738 ... P60712 37749275
    849626 8oi6:A (3.59) BS02 ADP 3.6.4.- GO:0001738 ... P60712 37749275
    849627 8oi6:B (3.59) BS01 peptide 3.6.4.- GO:0001738 ... P60712 37749275
    849628 8oi6:B (3.59) BS02 peptide 3.6.4.- GO:0001738 ... P60712 37749275
    849629 8oi6:B (3.59) BS03 ADP 3.6.4.- GO:0001738 ... P60712 37749275
    849630 8oi6:C (3.59) BS01 peptide 3.6.4.- GO:0001738 ... P60712 37749275
    849631 8oi6:C (3.59) BS02 peptide 3.6.4.- GO:0001738 ... P60712 37749275
    849632 8oi6:C (3.59) BS03 ADP 3.6.4.- GO:0001738 ... P60712 37749275
    849633 8oi6:D (3.59) BS01 peptide 3.6.4.- GO:0001738 ... P60712 37749275
    849634 8oi6:D (3.59) BS02 ADP 3.6.4.- GO:0001738 ... P60712 37749275
    849635 8oi7:A (1.85) BS01 CA ? GO:0005829 ... A2FTT0 37482279
    849636 8oi7:A (1.85) BS02 MG ? GO:0005829 ... A2FTT0 37482279
    849637 8oi7:B (1.85) BS01 CA ? GO:0005829 ... A2FTT0 37482279
    849638 8oi7:B (1.85) BS02 MG ? GO:0005829 ... A2FTT0 37482279
    849639 8oi8:A (2.28) BS01 ADP 3.6.4.- GO:0000776 ... P60709 37749275
    849640 8oi8:B (2.28) BS01 ADP 3.6.4.- GO:0000776 ... P60709 37749275
    849641 8oi8:C (2.28) BS01 ADP 3.6.4.- GO:0000776 ... P60709 37749275
    849642 8oi8:D (2.28) BS01 ADP 3.6.4.- GO:0000776 ... P60709 37749275
    849643 8oi8:E (2.28) BS01 ADP 3.6.4.- GO:0000776 ... P60709 37749275
    849644 8oi9:A (1.95) BS01 CA ? GO:0005829 ... A2FTT0 37482279
    849645 8oi9:A (1.95) BS02 38T ? GO:0005829 ... A2FTT0 37482279
    849646 8oi9:A (1.95) BS03 PIN ? GO:0005829 ... A2FTT0 37482279
    849647 8oi9:A (1.95) BS04 MG ? GO:0005829 ... A2FTT0 37482279
    849648 8oi9:B (1.95) BS01 CA ? GO:0005829 ... A2FTT0 37482279
    849649 8oi9:B (1.95) BS02 38T ? GO:0005829 ... A2FTT0 37482279
    849650 8oi9:B (1.95) BS03 MG ? GO:0005829 ... A2FTT0 37482279
    849651 8oia:A (2.3) BS01 CA ? GO:0005829 ... A2FTT0 37482279
    849652 8oia:A (2.3) BS02 RIB ? GO:0005829 ... A2FTT0 37482279
    849653 8oia:B (2.3) BS01 CA ? GO:0005829 ... A2FTT0 37482279
    849654 8oia:B (2.3) BS02 RIB ? GO:0005829 ... A2FTT0 37482279
    849655 8oia:C (2.3) BS01 CA ? GO:0005829 ... A2FTT0 37482279
    849656 8oia:C (2.3) BS02 RIB ? GO:0005829 ... A2FTT0 37482279
    849657 8oia:D (2.3) BS01 CA ? GO:0005829 ... A2FTT0 37482279
    849658 8oia:D (2.3) BS02 RIB ? GO:0005829 ... A2FTT0 37482279
    849659 8oib:A (2.44) BS01 CA ? GO:0005829 ... A2FTT0 37482279
    849660 8oib:B (2.44) BS01 CA ? GO:0005829 ... A2FTT0 37482279
    849661 8oib:C (2.44) BS01 CA ? GO:0005829 ... A2FTT0 37482279
    849662 8oib:D (2.44) BS01 CA ? GO:0005829 ... A2FTT0 37482279
    849663 8oic:A (2.8) BS01 CA ? GO:0005829 ... A2FTT0 37482279
    849664 8oic:B (2.8) BS01 CA ? GO:0005829 ... A2FTT0 37482279
    849665 8oic:C (2.8) BS01 CA ? GO:0005829 ... A2FTT0 37482279
    849666 8oic:D (2.8) BS01 CA ? GO:0005829 ... A2FTT0 37482279
    849667 8oic:E (2.8) BS01 CA ? GO:0005829 ... A2FTT0 37482279
    849668 8oic:F (2.8) BS01 CA ? GO:0005829 ... A2FTT0 37482279
    849669 8oic:G (2.8) BS01 CA ? GO:0005829 ... A2FTT0 37482279
    849670 8oic:H (2.8) BS01 CA ? GO:0005829 ... A2FTT0 37482279
    849671 8oid:A (2.3) BS01 ADP 3.6.4.- GO:0000776 ... P60709 37749275
    849672 8oid:B (2.3) BS01 ADP 3.6.4.- GO:0000776 ... P60709 37749275
    849673 8oid:C (2.3) BS01 ADP 3.6.4.- GO:0000776 ... P60709 37749275
    849674 8oid:D (2.3) BS01 ADP 3.6.4.- GO:0000776 ... P60709 37749275
    849675 8oid:E (2.3) BS01 ADP 3.6.4.- GO:0000776 ... P60709 37749275
    849676 8oie:A (2.35) BS01 S5Q 1.18.6.1 GO:0009399 ... D5ANJ7 38062208
    849677 8oie:A (2.35) BS02 CLF 1.18.6.1 GO:0009399 ... D5ANJ7 38062208
    849678 8oie:C (2.35) BS01 CLF 1.18.6.1 GO:0009399 ... D5ANJ9 38062208
    849679 8oie:D (2.35) BS01 ADP 1.18.6.1 GO:0005524 ... D5ANJ6 38062208
    849680 8oie:D (2.35) BS02 AF3 1.18.6.1 GO:0005524 ... D5ANJ6 38062208
    849681 8oie:D (2.35) BS03 SF4 1.18.6.1 GO:0005524 ... D5ANJ6 38062208
    849682 8oie:D (2.35) BS04 ADP 1.18.6.1 GO:0005524 ... D5ANJ6 38062208
    849683 8oie:E (2.35) BS01 ADP 1.18.6.1 GO:0005524 ... D5ANJ6 38062208
    849684 8oie:E (2.35) BS02 SF4 1.18.6.1 GO:0005524 ... D5ANJ6 38062208
    849685 8oie:E (2.35) BS03 ADP 1.18.6.1 GO:0005524 ... D5ANJ6 38062208
    849686 8oie:E (2.35) BS04 AF3 1.18.6.1 GO:0005524 ... D5ANJ6 38062208
    849687 8oie:F (2.35) BS01 S5Q 1.18.6.1 GO:0009399 ... D5ANJ7 38062208
    849688 8oie:F (2.35) BS02 CLF 1.18.6.1 GO:0009399 ... D5ANJ7 38062208
    849689 8oie:H (2.35) BS01 CLF 1.18.6.1 GO:0009399 ... D5ANJ9 38062208
    849690 8oie:I (2.35) BS01 ADP 1.18.6.1 GO:0005524 ... D5ANJ6 38062208
    849691 8oie:I (2.35) BS02 AF3 1.18.6.1 GO:0005524 ... D5ANJ6 38062208
    849692 8oie:I (2.35) BS03 SF4 1.18.6.1 GO:0005524 ... D5ANJ6 38062208
    849693 8oie:I (2.35) BS04 ADP 1.18.6.1 GO:0005524 ... D5ANJ6 38062208
    849694 8oie:J (2.35) BS01 ADP 1.18.6.1 GO:0005524 ... D5ANJ6 38062208
    849695 8oie:J (2.35) BS02 SF4 1.18.6.1 GO:0005524 ... D5ANJ6 38062208
    849696 8oie:J (2.35) BS03 ADP 1.18.6.1 GO:0005524 ... D5ANJ6 38062208
    849697 8oie:J (2.35) BS04 AF3 1.18.6.1 GO:0005524 ... D5ANJ6 38062208
    849698 8oif:A (3.5) BS01 AMP 6.2.1.- GO:0005515 ... P41226 38042859
    849699 8oih:AAA (1.86) BS01 AZA 1.7.3.3 GO:0004846 ... A0A8V0ZED1 37695804
    849700 8oih:AAA (1.86) BS02 OXY 1.7.3.3 GO:0004846 ... A0A8V0ZED1 37695804
    849701 8oih:BBB (1.86) BS01 AZA 1.7.3.3 GO:0004846 ... A0A8V0ZED1 37695804
    849702 8oih:CCC (1.86) BS01 AZA 1.7.3.3 GO:0004846 ... A0A8V0ZED1 37695804
    849703 8oih:DDD (1.86) BS01 AZA 1.7.3.3 GO:0004846 ... A0A8V0ZED1 37695804
    849704 8oih:DDD (1.86) BS02 OXY 1.7.3.3 GO:0004846 ... A0A8V0ZED1 37695804
    849705 8oij:A (2.0) BS01 peptide ? N/A Q23972 37523566
    849706 8oij:A (2.0) BS02 peptide ? N/A Q23972 37523566
    849707 8oij:B (2.0) BS01 peptide ? N/A Q23972 37523566
    849708 8oij:B (2.0) BS02 peptide ? N/A Q23972 37523566
    849709 8oin:AB (3.6) BS01 rna ? GO:0003735 ... F1SG95 37141370
    849710 8oin:AC (3.6) BS01 rna ? GO:0005739 ... A0A287ANU4 37141370
    849711 8oin:AD (3.6) BS01 rna ? GO:0005634 ... A0A8D1P8R7 37141370
    849712 8oin:AD (3.6) BS02 rna ? GO:0005634 ... A0A8D1P8R7 37141370
    849713 8oin:AE (3.6) BS01 rna ? GO:0003735 ... A0A5K1V0G5 37141370
    849714 8oin:AF (3.6) BS01 rna ? GO:0003729 ... A0A286ZJ25 37141370
    849715 8oin:AH (3.6) BS01 rna ? GO:0005739 ... F1RUU2 37141370
    849716 8oin:AJ (3.6) BS01 rna ? GO:0003735 ... A0A0M3KL52 37141370
    849717 8oin:AK (3.6) BS01 rna ? GO:0003735 ... A0A0M3KL53 37141370
    849718 8oin:AL (3.6) BS01 rna ? GO:0003735 ... A0A287AKS1 37141370
    849719 8oin:AM (3.6) BS01 rna ? GO:0003735 ... A0A480JTD7 37141370
    849720 8oin:AN (3.6) BS01 rna ? GO:0003735 ... A0A8D1IXU1 37141370
    849721 8oin:AO (3.6) BS01 rna ? GO:0003735 ... Q767K8 37141370
    849722 8oin:AO (3.6) BS02 ZN ? GO:0003735 ... Q767K8 37141370
    849723 8oin:AP (3.6) BS01 rna ? GO:0003735 ... A0A0M3KL54 37141370
    849724 8oin:AP (3.6) BS02 FES ? GO:0003735 ... A0A0M3KL54 37141370
    849725 8oin:AQ (3.6) BS01 rna ? GO:0003735 ... A0A286ZNB3 37141370
    849726 8oin:AS (3.6) BS01 rna ? GO:0003735 ... A0A287AEW3 37141370
    849727 8oin:AT (3.6) BS01 rna ? GO:0003735 ... A0A0M3KL55 37141370
    849728 8oin:AT (3.6) BS02 FES ? GO:0003735 ... A0A0M3KL55 37141370
    849729 8oin:AU (3.6) BS01 rna ? GO:0005763 ... A0A287AY01 37141370
    849730 8oin:AV (3.6) BS01 rna ? GO:0005737 ... A0A5G2R1I0 37141370
    849731 8oin:AX (3.6) BS01 rna ? GO:0003735 ... A0A8D1XNL0 37141370
    849732 8oin:AX (3.6) BS02 ATP ? GO:0003735 ... A0A8D1XNL0 37141370
    849733 8oin:AX (3.6) BS03 GDP ? GO:0003735 ... A0A8D1XNL0 37141370
    849734 8oin:AZ (3.6) BS01 rna ? GO:0005739 ... A0A4X1V2H3 37141370
    849735 8oin:Aa (3.6) BS01 rna ? GO:0003747 ... O75570 37141370
    849736 8oin:Aa (3.6) BS02 rna ? GO:0003747 ... O75570 37141370
    849737 8oin:Aa (3.6) BS03 rna ? GO:0003747 ... O75570 37141370
    849738 8oin:Aa (3.6) BS04 rna ? GO:0003747 ... O75570 37141370
    849739 8oin:Ab (3.6) BS01 rna ? GO:0003735 ... F1S001 37141370
    849740 8oin:Ab (3.6) BS02 MG ? GO:0003735 ... F1S001 37141370
    849741 8oin:Ac (3.6) BS01 rna ? GO:0005739 ... A0A4X1SZV4 37141370
    849742 8oin:Ad (3.6) BS01 rna ? GO:0003723 ... F1SU66 37141370
    849743 8oin:Ad (3.6) BS02 rna ? GO:0003723 ... F1SU66 37141370
    849744 8oin:Ag (3.6) BS01 rna ? GO:0003723 ... I3LU08 37141370
    849745 8oin:Ag (3.6) BS02 rna ? GO:0003723 ... I3LU08 37141370
    849746 8oin:Ai (3.6) BS01 rna ? GO:0003735 ... A0A286ZJJ6 37141370
    849747 8oin:Aj (3.6) BS01 rna ? GO:0003735 ... A0A287AVS9 37141370
    849748 8oin:B1 (3.6) BS01 peptide ? GO:0003735 ... A0A8D0VGD9 37141370
    849749 8oin:B1 (3.6) BS02 peptide ? GO:0003735 ... A0A8D0VGD9 37141370
    849750 8oin:BA (3.6) BS01 rna ? GO:0003735 ... A0A4X1TXR4 37141370
    849751 8oin:BB (3.6) BS01 rna ? GO:0003735 ... A0A480JJI1 37141370
    849752 8oin:BC (3.6) BS01 rna ? GO:0003723 ... F1RHJ1 37141370
    849753 8oin:BD (3.6) BS01 rna ? GO:0003735 ... A0A4X1U0F6 37141370
    849754 8oin:BE (3.6) BS01 rna ? GO:0003735 ... A0A286ZTW8 37141370
    849755 8oin:BF (3.6) BS01 rna ? GO:0003735 ... F1SGC7 37141370
    849756 8oin:BG (3.6) BS01 rna ? GO:0003735 ... A0A8D0VJF4 37141370
    849757 8oin:BH (3.6) BS01 rna ? GO:0003735 ... I3LTC4 37141370
    849758 8oin:BH (3.6) BS02 ZN ? GO:0003735 ... I3LTC4 37141370
    849759 8oin:BI (3.6) BS01 rna ? GO:0003735 ... A0A4X1TLP9 37141370
    849760 8oin:BJ (3.6) BS01 rna ? GO:0003735 ... A0A8D1JE64 37141370
    849761 8oin:BK (3.6) BS01 rna ? GO:0003735 ... A0A5G2QZK0 37141370
    849762 8oin:BL (3.6) BS01 rna ? GO:0003723 ... A0A287A143 37141370
    849763 8oin:BM (3.6) BS01 rna ? GO:0003735 ... A0A140UHW4 37141370
    849764 8oin:BN (3.6) BS01 rna ? GO:0003735 ... A0A287B9C4 37141370
    849765 8oin:BO (3.6) BS01 rna ? GO:0003735 ... I3LR45 37141370
    849766 8oin:BP (3.6) BS01 peptide ? GO:0005739 ... F1RWJ0 37141370
    849767 8oin:BP (3.6) BS02 peptide ? GO:0005739 ... F1RWJ0 37141370
    849768 8oin:BP (3.6) BS03 peptide ? GO:0005739 ... F1RWJ0 37141370
    849769 8oin:BP (3.6) BS04 peptide ? GO:0005739 ... F1RWJ0 37141370
    849770 8oin:BP (3.6) BS05 rna ? GO:0005739 ... F1RWJ0 37141370
    849771 8oin:BP (3.6) BS06 FES ? GO:0005739 ... F1RWJ0 37141370
    849772 8oin:BQ (3.6) BS01 rna ? GO:0003735 ... F1RU54 37141370
    849773 8oin:BR (3.6) BS01 rna ? GO:0003729 ... K7GP19 37141370
    849774 8oin:BS (3.6) BS01 rna ? GO:0003735 ... A0A287BMZ6 37141370
    849775 8oin:BT (3.6) BS01 rna ? GO:0003735 ... A0A8D0HMG9 37141370
    849776 8oin:BU (3.6) BS01 rna ? GO:0003735 ... F1RI89 37141370
    849777 8oin:BV (3.6) BS01 rna ? GO:0003735 ... F1RMQ4 37141370
    849778 8oin:BW (3.6) BS01 rna ? GO:0003735 ... A0A4X1VX01 37141370
    849779 8oin:BW (3.6) BS02 rna ? GO:0003735 ... A0A4X1VX01 37141370
    849780 8oin:BX (3.6) BS01 rna ? GO:0003735 ... I3LNJ0 37141370
    849781 8oin:BY (3.6) BS01 rna ? GO:0003735 ... A0A286ZU56 37141370
    849782 8oin:BZ (3.6) BS01 rna ? GO:0003723 ... F1RY70 37141370
    849783 8oin:Ba (3.6) BS01 rna ? GO:0003735 ... F1S9B7 37141370
    849784 8oin:Bc (3.6) BS01 rna ? N/A I3LN63 37141370
    849785 8oin:Be (3.6) BS01 rna ? GO:0003735 ... A0A287BP93 37141370
    849786 8oin:Bg (3.6) BS01 rna ? GO:0003735 ... A0A286ZXA6 37141370
    849787 8oin:Bh (3.6) BS01 rna ? GO:0003735 ... F1RRH6 37141370
    849788 8oin:Bh (3.6) BS02 FES ? GO:0003735 ... F1RRH6 37141370
    849789 8oin:Bi (3.6) BS01 rna ? GO:0003735 ... A0A480QIM3 37141370
    849790 8oin:Bj (3.6) BS01 rna ? GO:0003723 ... A0A287AF82 37141370
    849791 8oin:Bl (3.6) BS01 rna ? GO:0003735 ... A0A287A731 37141370
    849792 8oin:Bl (3.6) BS02 ZN ? GO:0003735 ... A0A287A731 37141370
    849793 8oin:Bm (3.6) BS01 rna ? GO:0003735 ... A0A287BIV6 37141370
    849794 8oin:Bn (3.6) BS01 rna ? GO:0005739 ... F1RW03 37141370
    849795 8oin:Bn (3.6) BS02 rna ? GO:0005739 ... F1RW03 37141370
    849796 8oin:Bp (3.6) BS01 rna ? GO:0005739 ... A0A286ZP98 37141370
    849797 8oin:Bp (3.6) BS02 rna ? GO:0005739 ... A0A286ZP98 37141370
    849798 8oin:Bq (3.6) BS01 rna ? GO:0003735 ... A0A8D1BPA5 37141370
    849799 8oin:Bq (3.6) BS02 MG ? GO:0003735 ... A0A8D1BPA5 37141370
    849800 8oin:Br (3.6) BS01 rna ? GO:0005739 ... A0A287BQA1 37141370

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).