SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    849801 8ozi:F (3.22) BS01 rna ? GO:0003676 ... A0A316E3U6 37467330
    849802 8ozi:F (3.22) BS02 dna ? GO:0003676 ... A0A316E3U6 37467330
    849803 8ozi:G (3.22) BS01 rna ? GO:0007165 ... A0A316E683 37467330
    849804 8ozi:G (3.22) BS02 dna ? GO:0007165 ... A0A316E683 37467330
    849805 8ozi:G (3.22) BS03 NAD ? GO:0007165 ... A0A316E683 37467330
    849806 8ozi:H (3.22) BS01 rna ? GO:0003676 ... A0A316E3U6 37467330
    849807 8ozi:H (3.22) BS02 dna ? GO:0003676 ... A0A316E3U6 37467330
    849808 8ozj:A (3.7) BS01 peptide N/A GO:0016020 ... A0A1Q1N9U9 39013471
    849809 8ozj:G (3.7) BS01 peptide N/A GO:0016020 ... A0A1Q1N9U9 39013471
    849810 8ozj:K (3.7) BS01 peptide N/A GO:0016020 ... A0A1Q1N9U9 39013471
    849811 8ozp:A (11.9) BS01 peptide N/A GO:0016020 ... A0A1Q1N9U9 39013471
    849812 8ozp:A (11.9) BS02 CLR N/A GO:0016020 ... A0A1Q1N9U9 39013471
    849813 8ozp:G (11.9) BS01 peptide N/A GO:0016020 ... A0A1Q1N9U9 39013471
    849814 8ozp:H (11.9) BS01 peptide N/A GO:0016020 ... A0A1Q1N9U9 39013471
    849815 8ozp:H (11.9) BS02 CLR N/A GO:0016020 ... A0A1Q1N9U9 39013471
    849816 8ozp:L (11.9) BS01 MAN N/A GO:0016020 ... A0A1Q1N9U9 39013471
    849817 8ozp:L (11.9) BS02 CLR N/A GO:0016020 ... A0A1Q1N9U9 39013471
    849818 8ozq:A (10.0) BS01 peptide N/A GO:0016020 ... A0A1Q1N9U9 39013471
    849819 8ozq:G (10.0) BS01 peptide N/A GO:0016020 ... A0A1Q1N9U9 39013471
    849820 8ozq:H (10.0) BS01 peptide N/A GO:0016020 ... A0A1Q1N9U9 39013471
    849821 8ozv:A (1.52) BS01 NDP ? GO:0000166 ... A0A179UH34 37581897
    849822 8ozv:A (1.52) BS02 W65 ? GO:0000166 ... A0A179UH34 37581897
    849823 8ozw:A (2.01) BS01 TXP ? GO:0000166 ... A0A179UH34 37581897
    849824 8ozw:B (2.01) BS01 TXP ? GO:0000166 ... A0A179UH34 37581897
    849825 8p01:A (2.094) BS01 W78 ? GO:0002218 ... Q86WV6 37450324
    849826 8p02:A (2.3) BS01 BYC N/A GO:0005737 ... A0A193DUB4 N/A
    849827 8p02:A (2.3) BS02 BYN N/A GO:0005737 ... A0A193DUB4 N/A
    849828 8p02:A (2.3) BS03 FE N/A GO:0005737 ... A0A193DUB4 N/A
    849829 8p02:A (2.3) BS04 FE N/A GO:0005737 ... A0A193DUB4 N/A
    849830 8p02:A (2.3) BS05 CA N/A GO:0005737 ... A0A193DUB4 N/A
    849831 8p02:B (2.3) BS01 BYC N/A GO:0005737 ... A0A193DUB4 N/A
    849832 8p02:B (2.3) BS02 BYN N/A GO:0005737 ... A0A193DUB4 N/A
    849833 8p02:B (2.3) BS03 FE N/A GO:0005737 ... A0A193DUB4 N/A
    849834 8p02:B (2.3) BS04 FE N/A GO:0005737 ... A0A193DUB4 N/A
    849835 8p02:B (2.3) BS05 CA N/A GO:0005737 ... A0A193DUB4 N/A
    849836 8p02:C (2.3) BS01 BYC N/A GO:0005737 ... A0A193DUB4 N/A
    849837 8p02:C (2.3) BS02 BYN N/A GO:0005737 ... A0A193DUB4 N/A
    849838 8p02:C (2.3) BS03 FE N/A GO:0005737 ... A0A193DUB4 N/A
    849839 8p02:C (2.3) BS04 FE N/A GO:0005737 ... A0A193DUB4 N/A
    849840 8p02:C (2.3) BS05 CA N/A GO:0005737 ... A0A193DUB4 N/A
    849841 8p02:D (2.3) BS01 BYC N/A GO:0005737 ... A0A193DUB4 N/A
    849842 8p02:D (2.3) BS02 BYN N/A GO:0005737 ... A0A193DUB4 N/A
    849843 8p02:D (2.3) BS03 FE N/A GO:0005737 ... A0A193DUB4 N/A
    849844 8p02:D (2.3) BS04 FE N/A GO:0005737 ... A0A193DUB4 N/A
    849845 8p02:D (2.3) BS05 CA N/A GO:0005737 ... A0A193DUB4 N/A
    849846 8p02:E (2.3) BS01 BYC N/A GO:0005737 ... A0A193DUB4 N/A
    849847 8p02:E (2.3) BS02 BYN N/A GO:0005737 ... A0A193DUB4 N/A
    849848 8p02:E (2.3) BS03 FE N/A GO:0005737 ... A0A193DUB4 N/A
    849849 8p02:E (2.3) BS04 FE N/A GO:0005737 ... A0A193DUB4 N/A
    849850 8p02:E (2.3) BS05 CA N/A GO:0005737 ... A0A193DUB4 N/A
    849851 8p02:F (2.3) BS01 BYC N/A GO:0005737 ... A0A193DUB4 N/A
    849852 8p02:F (2.3) BS02 BYN N/A GO:0005737 ... A0A193DUB4 N/A
    849853 8p02:F (2.3) BS03 FE N/A GO:0005737 ... A0A193DUB4 N/A
    849854 8p02:F (2.3) BS04 FE N/A GO:0005737 ... A0A193DUB4 N/A
    849855 8p02:F (2.3) BS05 CA N/A GO:0005737 ... A0A193DUB4 N/A
    849856 8p03:A (3.04) BS01 rna ? GO:0003676 ... G1T2G4 38244546
    849857 8p03:A (3.04) BS02 rna ? GO:0003676 ... G1T2G4 38244546
    849858 8p03:C (3.04) BS01 rna ? GO:0003735 ... G1TLT8 38244546
    849859 8p03:D (3.04) BS01 rna ? GO:0003735 ... G1TN72 38244546
    849860 8p03:E (3.04) BS01 rna N/A GO:0003723 ... N/A 38244546
    849861 8p03:F (3.04) BS01 rna 4.2.99.18 GO:0003677 ... G1TNM3 38244546
    849862 8p03:G (3.04) BS01 rna ? GO:0003723 ... G1TK17 38244546
    849863 8p03:H (3.04) BS01 rna ? GO:0003723 ... U3KMN4 38244546
    849864 8p03:I (3.04) BS01 rna ? GO:0003735 ... A0A5K1UJS7 38244546
    849865 8p03:J (3.04) BS01 rna ? GO:0003735 ... G1SVB0 38244546
    849866 8p03:K (3.04) BS01 rna ? GO:0003735 ... G1TJW1 38244546
    849867 8p03:L (3.04) BS01 rna ? GO:0003723 ... B7NZS8 38244546
    849868 8p03:M (3.04) BS01 rna ? N/A G1TPV3 38244546
    849869 8p03:N (3.04) BS01 rna ? GO:0003735 ... G1TRM4 38244546
    849870 8p03:O (3.04) BS01 rna ? GO:0003735 ... G1SFR8 38244546
    849871 8p03:P (3.04) BS01 rna ? GO:0003735 ... G1SP51 38244546
    849872 8p03:Q (3.04) BS01 rna ? GO:0003735 ... G1T1F0 38244546
    849873 8p03:R (3.04) BS01 rna ? GO:0000028 ... G1U0Q2 38244546
    849874 8p03:R (3.04) BS02 rna ? GO:0000028 ... G1U0Q2 38244546
    849875 8p03:S (3.04) BS01 rna ? GO:0000462 ... G1SGX4 38244546
    849876 8p03:T (3.04) BS01 rna ? GO:0003735 ... G1TU13 38244546
    849877 8p03:U (3.04) BS01 rna ? GO:0003676 ... G1TPG3 38244546
    849878 8p03:U (3.04) BS02 rna ? GO:0003676 ... G1TPG3 38244546
    849879 8p03:V (3.04) BS01 rna ? GO:0000028 ... G1TN62 38244546
    849880 8p03:W (3.04) BS01 rna ? GO:0003723 ... G1SIZ2 38244546
    849881 8p03:Y (3.04) BS01 rna ? GO:0003735 ... G1TG89 38244546
    849882 8p03:Z (3.04) BS01 rna ? GO:0003735 ... G1SZ47 38244546
    849883 8p03:a (3.04) BS01 rna ? GO:0003735 ... A0A5F9D2E6 38244546
    849884 8p03:b (3.04) BS01 rna ? GO:0003729 ... G1TFE8 38244546
    849885 8p03:c (3.04) BS01 rna ? GO:0003735 ... G1TZ76 38244546
    849886 8p03:d (3.04) BS01 rna ? GO:0000028 ... G1TIB4 38244546
    849887 8p03:e (3.04) BS01 rna ? GO:0002181 ... G1U7M4 38244546
    849888 8p03:f (3.04) BS01 rna ? GO:0003735 ... G1SK22 38244546
    849889 8p03:g (3.04) BS01 rna ? GO:0001891 ... G1SJB4 38244546
    849890 8p03:i (3.04) BS01 rna ? GO:0003735 ... G1T8A2 38244546
    849891 8p03:j (3.04) BS01 rna ? GO:0003723 ... G1SYS4 38244546
    849892 8p03:j (3.04) BS02 rna ? GO:0003723 ... G1SYS4 38244546
    849893 8p03:k (3.04) BS01 rna ? GO:0005524 ... G1SG72 38244546
    849894 8p03:n (3.04) BS01 rna ? GO:0003735 ... G1TDB3 38244546
    849895 8p04:A (2.6) BS01 WAK 2.7.12.1 GO:0004672 ... P49759 37487467
    849896 8p05:A (2.45) BS01 WAK 2.7.11.1 GO:0004672 ... P68400 37487467
    849897 8p05:B (2.45) BS01 WAK 2.7.11.1 GO:0004672 ... P68400 37487467
    849898 8p06:A (2.4) BS01 WAU 2.7.11.1 GO:0004672 ... P68400 38959455
    849899 8p06:B (2.4) BS01 WAU 2.7.11.1 GO:0004672 ... P68400 38959455
    849900 8p07:A (2.4) BS01 WAP 2.7.11.1 GO:0004672 ... P68400 38959455
    849901 8p07:B (2.4) BS01 WAP 2.7.11.1 GO:0004672 ... P68400 38959455
    849902 8p08:A (2.4) BS01 WAZ 2.7.12.1 GO:0004672 ... P49759 38051674
    849903 8p09:A (3.3) BS01 rna ? GO:0003676 ... G1T2G4 38244546
    849904 8p09:A (3.3) BS02 rna ? GO:0003676 ... G1T2G4 38244546
    849905 8p09:C (3.3) BS01 rna ? GO:0003735 ... G1TLT8 38244546
    849906 8p09:D (3.3) BS01 rna ? GO:0003735 ... G1TN72 38244546
    849907 8p09:E (3.3) BS01 rna N/A GO:0003723 ... N/A 38244546
    849908 8p09:F (3.3) BS01 rna 4.2.99.18 GO:0003677 ... G1TNM3 38244546
    849909 8p09:G (3.3) BS01 rna ? GO:0003723 ... G1TK17 38244546
    849910 8p09:H (3.3) BS01 rna ? GO:0003723 ... U3KMN4 38244546
    849911 8p09:I (3.3) BS01 rna ? GO:0003735 ... A0A5K1UJS7 38244546
    849912 8p09:J (3.3) BS01 rna ? GO:0003735 ... G1SVB0 38244546
    849913 8p09:K (3.3) BS01 rna ? GO:0003735 ... G1TJW1 38244546
    849914 8p09:L (3.3) BS01 rna ? GO:0003723 ... B7NZS8 38244546
    849915 8p09:M (3.3) BS01 rna ? N/A G1TPV3 38244546
    849916 8p09:N (3.3) BS01 rna ? GO:0003735 ... G1TRM4 38244546
    849917 8p09:O (3.3) BS01 rna ? GO:0003735 ... G1SFR8 38244546
    849918 8p09:P (3.3) BS01 rna ? GO:0003735 ... G1SP51 38244546
    849919 8p09:Q (3.3) BS01 rna ? GO:0003735 ... G1T1F0 38244546
    849920 8p09:R (3.3) BS01 rna ? GO:0000028 ... G1U0Q2 38244546
    849921 8p09:R (3.3) BS02 rna ? GO:0000028 ... G1U0Q2 38244546
    849922 8p09:S (3.3) BS01 rna ? GO:0000462 ... G1SGX4 38244546
    849923 8p09:T (3.3) BS01 rna ? GO:0003735 ... G1TU13 38244546
    849924 8p09:U (3.3) BS01 rna ? GO:0003676 ... G1TPG3 38244546
    849925 8p09:U (3.3) BS02 rna ? GO:0003676 ... G1TPG3 38244546
    849926 8p09:V (3.3) BS01 rna ? GO:0000028 ... G1TN62 38244546
    849927 8p09:W (3.3) BS01 rna ? GO:0003723 ... G1SIZ2 38244546
    849928 8p09:Y (3.3) BS01 rna ? GO:0003735 ... G1TG89 38244546
    849929 8p09:Z (3.3) BS01 rna ? GO:0003735 ... G1SZ47 38244546
    849930 8p09:a (3.3) BS01 rna ? GO:0003735 ... A0A5F9D2E6 38244546
    849931 8p09:b (3.3) BS01 rna ? GO:0003729 ... G1TFE8 38244546
    849932 8p09:c (3.3) BS01 rna ? GO:0003735 ... G1TZ76 38244546
    849933 8p09:d (3.3) BS01 rna ? GO:0000028 ... G1TIB4 38244546
    849934 8p09:e (3.3) BS01 rna ? GO:0002181 ... G1U7M4 38244546
    849935 8p09:f (3.3) BS01 rna ? GO:0003735 ... G1SK22 38244546
    849936 8p09:g (3.3) BS01 rna ? GO:0001891 ... G1SJB4 38244546
    849937 8p09:i (3.3) BS01 rna ? GO:0003735 ... G1T8A2 38244546
    849938 8p09:j (3.3) BS01 rna ? GO:0003723 ... G1SYS4 38244546
    849939 8p09:j (3.3) BS02 rna ? GO:0003723 ... G1SYS4 38244546
    849940 8p09:k (3.3) BS01 rna ? GO:0005524 ... G1SG72 38244546
    849941 8p09:n (3.3) BS01 rna ? GO:0003735 ... G1TDB3 38244546
    849942 8p0a:A (3.67) BS01 ATP N/A GO:0005524 ... Q14683 N/A
    849943 8p0a:A (3.67) BS02 ATP N/A GO:0005524 ... Q14683 N/A
    849944 8p0a:B (3.67) BS01 ATP N/A GO:0005524 ... Q9UQE7 N/A
    849945 8p0a:B (3.67) BS02 ATP N/A GO:0005524 ... Q9UQE7 N/A
    849946 8p0b:A (2.87) BS01 rna ? GO:0003723 ... P27194 N/A
    849947 8p0b:A (2.87) BS02 rna ? GO:0003723 ... P27194 N/A
    849948 8p0b:B (2.87) BS01 rna 2.7.7.48 GO:0000166 ... O41353 N/A
    849949 8p0b:B (2.87) BS02 rna 2.7.7.48 GO:0000166 ... O41353 N/A
    849950 8p0d:A (1.31) BS01 peptide ? GO:0000122 ... P31947 38237679
    849951 8p0d:A (1.31) BS02 MG ? GO:0000122 ... P31947 38237679
    849952 8p0e:A (1.59) BS01 APR 2.7.7.48
    3.6.1.15
    3.6.4.13
    N/A G3M8F4 38289106
    849953 8p0e:B (1.59) BS01 APR 2.7.7.48
    3.6.1.15
    3.6.4.13
    N/A G3M8F4 38289106
    849954 8p0f:A (1.98) BS01 WBN ? N/A P40337 N/A
    849955 8p0f:D (1.98) BS01 WBN ? N/A P40337 N/A
    849956 8p0g:A (3.17) BS01 rna ? GO:0003723 ... P27194 N/A
    849957 8p0g:A (3.17) BS02 rna ? GO:0003723 ... P27194 N/A
    849958 8p0g:B (3.17) BS01 rna 2.7.7.48 GO:0000166 ... O41353 N/A
    849959 8p0g:B (3.17) BS02 MG 2.7.7.48 GO:0000166 ... O41353 N/A
    849960 8p0i:A (3.5) BS01 WC3 N/A GO:0006508 ... Q9UIQ6 39167040
    849961 8p0i:A (3.5) BS02 ZN N/A GO:0006508 ... Q9UIQ6 39167040
    849962 8p0i:B (3.5) BS01 WC3 N/A GO:0006508 ... Q9UIQ6 39167040
    849963 8p0i:B (3.5) BS02 ZN N/A GO:0006508 ... Q9UIQ6 39167040
    849964 8p0j:A (2.39) BS01 dna 2.7.7.6 GO:0000428 ... P20504 N/A
    849965 8p0j:A (2.39) BS02 dna 2.7.7.6 GO:0000428 ... P20504 N/A
    849966 8p0j:A (2.39) BS03 MG 2.7.7.6 GO:0000428 ... P20504 N/A
    849967 8p0j:A (2.39) BS04 ZN 2.7.7.6 GO:0000428 ... P20504 N/A
    849968 8p0j:A (2.39) BS05 ZN 2.7.7.6 GO:0000428 ... P20504 N/A
    849969 8p0j:B (2.39) BS01 dna 2.7.7.6 GO:0000428 ... P68694 N/A
    849970 8p0j:B (2.39) BS02 ZN 2.7.7.6 GO:0000428 ... P68694 N/A
    849971 8p0j:H (2.39) BS01 dna ? N/A P20998 N/A
    849972 8p0j:H (2.39) BS02 dna ? N/A P20998 N/A
    849973 8p0j:I (2.39) BS01 dna ? N/A P20986 N/A
    849974 8p0j:I (2.39) BS02 dna ? N/A P20986 N/A
    849975 8p0j:J (2.39) BS01 ZN 2.7.7.6 GO:0000428 ... P68315 N/A
    849976 8p0k:A (2.64) BS01 dna 2.7.7.6 GO:0000428 ... P20504 N/A
    849977 8p0k:A (2.64) BS02 dna 2.7.7.6 GO:0000428 ... P20504 N/A
    849978 8p0k:A (2.64) BS03 MG 2.7.7.6 GO:0000428 ... P20504 N/A
    849979 8p0k:A (2.64) BS04 ZN 2.7.7.6 GO:0000428 ... P20504 N/A
    849980 8p0k:A (2.64) BS05 ZN 2.7.7.6 GO:0000428 ... P20504 N/A
    849981 8p0k:B (2.64) BS01 dna 2.7.7.6 GO:0000428 ... P68694 N/A
    849982 8p0k:B (2.64) BS02 ZN 2.7.7.6 GO:0000428 ... P68694 N/A
    849983 8p0k:H (2.64) BS01 dna ? N/A P20998 N/A
    849984 8p0k:H (2.64) BS02 dna ? N/A P20998 N/A
    849985 8p0k:I (2.64) BS01 dna ? N/A P20986 N/A
    849986 8p0k:I (2.64) BS02 dna ? N/A P20986 N/A
    849987 8p0k:J (2.64) BS01 ZN 2.7.7.6 GO:0000428 ... P68315 N/A
    849988 8p0m:A (1.961) BS01 WCF ? N/A Q99594 38565920
    849989 8p0m:B (1.961) BS01 WCF ? N/A Q99594 38565920
    849990 8p0m:C (1.961) BS01 WCF N/A N/A Q99594 38565920
    849991 8p0m:D (1.961) BS01 WCF N/A N/A Q99594 38565920
    849992 8p0n:A (2.58) BS01 dna 2.7.7.6 GO:0000428 ... P20504 N/A
    849993 8p0n:A (2.58) BS02 dna 2.7.7.6 GO:0000428 ... P20504 N/A
    849994 8p0n:A (2.58) BS03 MG 2.7.7.6 GO:0000428 ... P20504 N/A
    849995 8p0n:A (2.58) BS04 ZN 2.7.7.6 GO:0000428 ... P20504 N/A
    849996 8p0n:A (2.58) BS05 ZN 2.7.7.6 GO:0000428 ... P20504 N/A
    849997 8p0n:B (2.58) BS01 dna 2.7.7.6 GO:0000428 ... P68694 N/A
    849998 8p0n:B (2.58) BS02 ZN 2.7.7.6 GO:0000428 ... P68694 N/A
    849999 8p0n:H (2.58) BS01 dna ? N/A P20998 N/A
    850000 8p0n:H (2.58) BS02 dna ? N/A P20998 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).