SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    850001 8oir:Bp (3.1) BS01 rna ? GO:0003723 ... Q9NQ50 37141370
    850002 8oir:Bp (3.1) BS02 rna ? GO:0003723 ... Q9NQ50 37141370
    850003 8oir:Bq (3.1) BS01 rna ? GO:0003723 ... Q8IXM3 37141370
    850004 8oir:Br (3.1) BS01 rna ? GO:0003723 ... Q9Y6G3 37141370
    850005 8oir:Bs (3.1) BS01 rna ? GO:0003723 ... Q8N983 37141370
    850006 8oir:Bt (3.1) BS01 rna 3.1.26.- GO:0003723 ... Q9H9J2 37141370
    850007 8oir:Bu (3.1) BS01 rna ? GO:0003723 ... Q9BRJ2 37141370
    850008 8oir:Bv (3.1) BS01 rna ? GO:0003735 ... Q9H2W6 37141370
    850009 8oir:Bv (3.1) BS02 VAL ? GO:0003735 ... Q9H2W6 37141370
    850010 8oir:Bw (3.1) BS01 rna ? GO:0005515 ... Q96GC5 37141370
    850011 8oir:Bw (3.1) BS02 rna ? GO:0005515 ... Q96GC5 37141370
    850012 8oir:Bx (3.1) BS01 rna ? GO:0003735 ... Q13405 37141370
    850013 8oir:Bz (3.1) BS01 rna ? GO:0003735 ... Q4U2R6 37141370
    850014 8ois:AB (3.0) BS01 peptide ? GO:0003723 ... P82673 37141370
    850015 8ois:AC (3.0) BS01 rna ? GO:0003723 ... Q96EL2 37141370
    850016 8ois:AD (3.0) BS01 rna ? GO:0005515 ... Q9NWT8 37141370
    850017 8ois:AE (3.0) BS01 rna ? GO:0003735 ... P82932 37141370
    850018 8ois:AF (3.0) BS01 rna ? GO:0003723 ... Q9Y2R9 37141370
    850019 8ois:AH (3.0) BS01 peptide ? GO:0005739 ... P82664 37141370
    850020 8ois:AH (3.0) BS02 rna ? GO:0005739 ... P82664 37141370
    850021 8ois:AJ (3.0) BS01 rna ? GO:0003723 ... O15235 37141370
    850022 8ois:AK (3.0) BS01 rna ? GO:0003723 ... O60783 37141370
    850023 8ois:AL (3.0) BS01 rna ? GO:0003723 ... P82914 37141370
    850024 8ois:AM (3.0) BS01 rna ? GO:0003735 ... Q9Y3D3 37141370
    850025 8ois:AM (3.0) BS02 FS2 ? GO:0003735 ... Q9Y3D3 37141370
    850026 8ois:AN (3.0) BS01 rna ? GO:0003735 ... Q9Y2R5 37141370
    850027 8ois:AO (3.0) BS01 rna ? GO:0003735 ... Q9Y676 37141370
    850028 8ois:AO (3.0) BS02 ZN ? GO:0003735 ... Q9Y676 37141370
    850029 8ois:AP (3.0) BS01 rna ? GO:0003735 ... Q9Y3D5 37141370
    850030 8ois:AP (3.0) BS02 FS2 ? GO:0003735 ... Q9Y3D5 37141370
    850031 8ois:AQ (3.0) BS01 rna ? GO:0003723 ... P82921 37141370
    850032 8ois:AS (3.0) BS01 rna ? GO:0003723 ... Q9Y3D9 37141370
    850033 8ois:AT (3.0) BS01 rna ? GO:0003735 ... P82663 37141370
    850034 8ois:AT (3.0) BS02 FS2 ? GO:0003735 ... P82663 37141370
    850035 8ois:AU (3.0) BS01 rna ? GO:0003723 ... Q9BYN8 37141370
    850036 8ois:AV (3.0) BS01 peptide ? GO:0000049 ... Q92552 37141370
    850037 8ois:AV (3.0) BS02 rna ? GO:0000049 ... Q92552 37141370
    850038 8ois:AX (3.0) BS01 rna ? GO:0003723 ... P51398 37141370
    850039 8ois:AX (3.0) BS02 ATP ? GO:0003723 ... P51398 37141370
    850040 8ois:AX (3.0) BS03 GDP ? GO:0003723 ... P51398 37141370
    850041 8ois:AY (3.0) BS01 peptide ? GO:0003723 ... Q92665 37141370
    850042 8ois:AZ (3.0) BS01 peptide ? GO:0003735 ... Q9Y291 37141370
    850043 8ois:AZ (3.0) BS02 rna ? GO:0003735 ... Q9Y291 37141370
    850044 8ois:Aa (3.0) BS01 rna ? GO:0003747 ... O75570 37141370
    850045 8ois:Aa (3.0) BS02 rna ? GO:0003747 ... O75570 37141370
    850046 8ois:Aa (3.0) BS03 rna ? GO:0003747 ... O75570 37141370
    850047 8ois:Ab (3.0) BS01 rna ? GO:0003735 ... Q9Y399 37141370
    850048 8ois:Ab (3.0) BS02 MG ? GO:0003735 ... Q9Y399 37141370
    850049 8ois:Ac (3.0) BS01 rna ? GO:0001650 ... Q96BP2 37141370
    850050 8ois:Ad (3.0) BS01 rna ? GO:0003723 ... P82675 37141370
    850051 8ois:Ad (3.0) BS02 MG ? GO:0003723 ... P82675 37141370
    850052 8ois:Ae (3.0) BS01 rna ? GO:0003723 ... Q96EY7 37141370
    850053 8ois:Ag (3.0) BS01 rna ? GO:0003723 ... P82933 37141370
    850054 8ois:Ai (3.0) BS01 rna ? GO:0003723 ... P82912 37141370
    850055 8ois:Aj (3.0) BS01 rna ? GO:0003735 ... P82930 37141370
    850056 8oit:Aa (2.9) BS01 rna ? GO:0003747 ... O75570 37141370
    850057 8oit:Aa (2.9) BS02 rna ? GO:0003747 ... O75570 37141370
    850058 8oit:BA (2.9) BS01 rna ? GO:0003723 ... Q9NWU5 37141370
    850059 8oit:BB (2.9) BS01 rna ? GO:0003723 ... Q16540 37141370
    850060 8oit:BC (2.9) BS01 rna ? GO:0003723 ... Q96A35 37141370
    850061 8oit:BD (2.9) BS01 rna ? GO:0003723 ... Q9P0M9 37141370
    850062 8oit:BE (2.9) BS01 rna ? GO:0003723 ... Q13084 37141370
    850063 8oit:BF (2.9) BS01 rna ? GO:0003735 ... Q9HD33 37141370
    850064 8oit:BG (2.9) BS01 rna ? GO:0003735 ... Q8TCC3 37141370
    850065 8oit:BH (2.9) BS01 rna ? GO:0003723 ... Q9BYC8 37141370
    850066 8oit:BH (2.9) BS02 ZN ? GO:0003723 ... Q9BYC8 37141370
    850067 8oit:BI (2.9) BS01 rna ? GO:0003735 ... O75394 37141370
    850068 8oit:BJ (2.9) BS01 rna ? GO:0003735 ... Q9BQ48 37141370
    850069 8oit:BK (2.9) BS01 rna ? GO:0003735 ... Q9NZE8 37141370
    850070 8oit:BL (2.9) BS01 rna ? GO:0003723 ... Q5T653 37141370
    850071 8oit:BM (2.9) BS01 rna ? GO:0003723 ... P09001 37141370
    850072 8oit:BN (2.9) BS01 rna ? GO:0003723 ... Q9BYD3 37141370
    850073 8oit:BO (2.9) BS01 rna ? GO:0003723 ... Q9BYD2 37141370
    850074 8oit:BP (2.9) BS01 rna ? GO:0003723 ... Q7Z7H8 37141370
    850075 8oit:BQ (2.9) BS01 rna ? GO:0003723 ... Q9Y3B7 37141370
    850076 8oit:BR (2.9) BS01 rna ? GO:0003723 ... Q9BYD1 37141370
    850077 8oit:BS (2.9) BS01 rna ? GO:0003723 ... Q6P1L8 37141370
    850078 8oit:BT (2.9) BS01 rna ? GO:0003723 ... Q9P015 37141370
    850079 8oit:BU (2.9) BS01 rna ? GO:0003735 ... Q9NX20 37141370
    850080 8oit:BV (2.9) BS01 rna ? GO:0003735 ... Q9NRX2 37141370
    850081 8oit:BW (2.9) BS01 rna ? GO:0003735 ... Q9H0U6 37141370
    850082 8oit:BW (2.9) BS02 rna ? GO:0003735 ... Q9H0U6 37141370
    850083 8oit:BX (2.9) BS01 rna ? GO:0003735 ... P49406 37141370
    850084 8oit:BY (2.9) BS01 rna ? GO:0003723 ... Q9BYC9 37141370
    850085 8oit:BZ (2.9) BS01 rna ? GO:0003723 ... Q7Z2W9 37141370
    850086 8oit:Ba (2.9) BS01 rna ? GO:0003735 ... Q86TS9 37141370
    850087 8oit:Bb (2.9) BS01 rna ? GO:0005515 ... Q96EL3 37141370
    850088 8oit:Bc (2.9) BS01 rna ? GO:0003723 ... Q6P161 37141370
    850089 8oit:Be (2.9) BS01 rna ? GO:0003735 ... Q9BQC6 37141370
    850090 8oit:Bg (2.9) BS01 rna ? GO:0003735 ... Q8TAE8 37141370
    850091 8oit:Bh (2.9) BS01 rna ? GO:0003735 ... Q9NVS2 37141370
    850092 8oit:Bh (2.9) BS02 FS2 ? GO:0003735 ... Q9NVS2 37141370
    850093 8oit:Bi (2.9) BS01 rna ? GO:0003723 ... Q9NP92 37141370
    850094 8oit:Bj (2.9) BS01 rna ? GO:0003723 ... Q9BYD6 37141370
    850095 8oit:Bl (2.9) BS01 rna ? GO:0003735 ... Q9P0J6 37141370
    850096 8oit:Bl (2.9) BS02 ZN ? GO:0003735 ... Q9P0J6 37141370
    850097 8oit:Bm (2.9) BS01 rna ? GO:0003723 ... Q9BZE1 37141370
    850098 8oit:Bn (2.9) BS01 rna ? GO:0005515 ... Q96DV4 37141370
    850099 8oit:Bn (2.9) BS02 rna ? GO:0005515 ... Q96DV4 37141370
    850100 8oit:Bp (2.9) BS01 rna ? GO:0003723 ... Q9NQ50 37141370
    850101 8oit:Bp (2.9) BS02 rna ? GO:0003723 ... Q9NQ50 37141370
    850102 8oit:Bq (2.9) BS01 rna ? GO:0003723 ... Q8IXM3 37141370
    850103 8oit:Br (2.9) BS01 rna ? GO:0003723 ... Q9Y6G3 37141370
    850104 8oit:Bs (2.9) BS01 rna ? GO:0003723 ... Q8N983 37141370
    850105 8oit:Bt (2.9) BS01 rna 3.1.26.- GO:0003723 ... Q9H9J2 37141370
    850106 8oit:Bu (2.9) BS01 rna ? GO:0003723 ... Q9BRJ2 37141370
    850107 8oit:Bv (2.9) BS01 rna ? GO:0003735 ... Q9H2W6 37141370
    850108 8oit:Bv (2.9) BS02 VAL ? GO:0003735 ... Q9H2W6 37141370
    850109 8oit:Bw (2.9) BS01 rna ? GO:0005515 ... Q96GC5 37141370
    850110 8oit:Bw (2.9) BS02 rna ? GO:0005515 ... Q96GC5 37141370
    850111 8oit:Bx (2.9) BS01 rna ? GO:0003735 ... Q13405 37141370
    850112 8oit:Bz (2.9) BS01 rna ? GO:0003735 ... Q4U2R6 37141370
    850113 8oiv:A (2.12) BS01 rna 2.1.1.57 GO:0003746 ... A0A7H0DN74 37421984
    850114 8oiv:A (2.12) BS02 SAH 2.1.1.57 GO:0003746 ... A0A7H0DN74 37421984
    850115 8oiv:B (2.12) BS01 GTG 2.1.1.57 GO:0003746 ... A0A7H0DN74 37421984
    850116 8oiv:B (2.12) BS02 SAH 2.1.1.57 GO:0003746 ... A0A7H0DN74 37421984
    850117 8oiw:AAA (1.89) BS01 AZA 1.7.3.3 GO:0004846 ... A0A8V0ZED1 37695804
    850118 8oiw:AAA (1.89) BS02 OXY 1.7.3.3 GO:0004846 ... A0A8V0ZED1 37695804
    850119 8oiw:AAA (1.89) BS03 AZA 1.7.3.3 GO:0004846 ... A0A8V0ZED1 37695804
    850120 8oiw:BBB (1.89) BS01 AZA 1.7.3.3 GO:0004846 ... A0A8V0ZED1 37695804
    850121 8oiw:BBB (1.89) BS02 OXY 1.7.3.3 GO:0004846 ... A0A8V0ZED1 37695804
    850122 8oiw:BBB (1.89) BS03 AZA 1.7.3.3 GO:0004846 ... A0A8V0ZED1 37695804
    850123 8oiw:CCC (1.89) BS01 AZA 1.7.3.3 GO:0004846 ... A0A8V0ZED1 37695804
    850124 8oiw:CCC (1.89) BS02 OXY 1.7.3.3 GO:0004846 ... A0A8V0ZED1 37695804
    850125 8oiw:CCC (1.89) BS03 AZA 1.7.3.3 GO:0004846 ... A0A8V0ZED1 37695804
    850126 8oiw:DDD (1.89) BS01 AZA 1.7.3.3 GO:0004846 ... A0A8V0ZED1 37695804
    850127 8oiw:DDD (1.89) BS02 OXY 1.7.3.3 GO:0004846 ... A0A8V0ZED1 37695804
    850128 8oiw:DDD (1.89) BS03 AZA 1.7.3.3 GO:0004846 ... A0A8V0ZED1 37695804
    850129 8oix:H (2.89) BS01 SA1 3.4.25.1 GO:0004175 ... A2E7Z2 39366995
    850130 8oix:I (2.89) BS01 SA1 3.4.25.1 GO:0004298 ... A2F2T6 39366995
    850131 8oix:V (2.89) BS01 SA1 3.4.25.1 GO:0004175 ... A2E7Z2 39366995
    850132 8oix:W (2.89) BS01 SA1 3.4.25.1 GO:0004298 ... A2F2T6 39366995
    850133 8oiz:B (2.5) BS01 ZN ? GO:0005515 ... Q96SW2 37418539
    850134 8oiz:B (2.5) BS02 Y70 ? GO:0005515 ... Q96SW2 37418539
    850135 8oj0:1 (3.3) BS01 peptide ? GO:0005048 ... P61619 38383785
    850136 8oj0:1 (3.3) BS02 rna ? GO:0005048 ... P61619 38383785
    850137 8oj0:2 (3.3) BS01 peptide ? GO:0005515 ... P60059 38383785
    850138 8oj0:A (3.3) BS01 rna 2.3.2.- GO:0000077 ... O94874 38383785
    850139 8oj0:B (3.3) BS01 rna ? GO:0000079 ... Q96JB5 38383785
    850140 8oj0:K (3.3) BS01 rna ? GO:0000054 ... P56537 38383785
    850141 8oj0:LA (3.3) BS01 rna ? GO:0002181 ... P62917 38383785
    850142 8oj0:LB (3.3) BS01 rna ? GO:0002181 ... P39023 38383785
    850143 8oj0:LC (3.3) BS01 rna ? GO:0002181 ... P36578 38383785
    850144 8oj0:LC (3.3) BS02 rna ? GO:0002181 ... P36578 38383785
    850145 8oj0:LD (3.3) BS01 rna ? GO:0000027 ... P46777 38383785
    850146 8oj0:LD (3.3) BS02 rna ? GO:0000027 ... P46777 38383785
    850147 8oj0:LE (3.3) BS01 rna ? GO:0002181 ... Q02878 38383785
    850148 8oj0:LF (3.3) BS01 rna ? GO:0000463 ... P18124 38383785
    850149 8oj0:LF (3.3) BS02 rna ? GO:0000463 ... P18124 38383785
    850150 8oj0:LG (3.3) BS01 rna ? GO:0000470 ... P62424 38383785
    850151 8oj0:LG (3.3) BS02 rna ? GO:0000470 ... P62424 38383785
    850152 8oj0:LH (3.3) BS01 rna ? GO:0002181 ... P32969 38383785
    850153 8oj0:LI (3.3) BS01 rna ? GO:0000027 ... Q96L21 38383785
    850154 8oj0:LI (3.3) BS02 rna ? GO:0000027 ... Q96L21 38383785
    850155 8oj0:LJ (3.3) BS01 rna ? GO:0000027 ... P62913 38383785
    850156 8oj0:LJ (3.3) BS02 rna ? GO:0000027 ... P62913 38383785
    850157 8oj0:LL (3.3) BS01 rna ? GO:0002181 ... P26373 38383785
    850158 8oj0:LL (3.3) BS02 rna ? GO:0002181 ... P26373 38383785
    850159 8oj0:LM (3.3) BS01 rna ? GO:0002181 ... P50914 38383785
    850160 8oj0:LN (3.3) BS01 rna ? GO:0002181 ... P61313 38383785
    850161 8oj0:LN (3.3) BS02 rna ? GO:0002181 ... P61313 38383785
    850162 8oj0:LO (3.3) BS01 rna ? GO:0002181 ... P40429 38383785
    850163 8oj0:LP (3.3) BS01 rna ? GO:0002181 ... P18621 38383785
    850164 8oj0:LP (3.3) BS02 rna ? GO:0002181 ... P18621 38383785
    850165 8oj0:LQ (3.3) BS01 rna ? GO:0002181 ... Q07020 38383785
    850166 8oj0:LR (3.3) BS01 rna ? GO:0002181 ... P84098 38383785
    850167 8oj0:LS (3.3) BS01 rna ? GO:0002181 ... Q02543 38383785
    850168 8oj0:LS (3.3) BS02 rna ? GO:0002181 ... Q02543 38383785
    850169 8oj0:LT (3.3) BS01 rna ? GO:0001650 ... P46778 38383785
    850170 8oj0:LT (3.3) BS02 rna ? GO:0001650 ... P46778 38383785
    850171 8oj0:LU (3.3) BS01 rna ? GO:0002181 ... P35268 38383785
    850172 8oj0:LV (3.3) BS01 rna ? GO:0000122 ... P62829 38383785
    850173 8oj0:LW (3.3) BS01 rna ? GO:0002181 ... P83731 38383785
    850174 8oj0:LX (3.3) BS01 rna ? GO:0002181 ... P62750 38383785
    850175 8oj0:LX (3.3) BS02 rna ? GO:0002181 ... P62750 38383785
    850176 8oj0:LY (3.3) BS01 rna ? GO:0002181 ... P61254 38383785
    850177 8oj0:LY (3.3) BS02 rna ? GO:0002181 ... P61254 38383785
    850178 8oj0:LZ (3.3) BS01 rna ? GO:0002181 ... P61353 38383785
    850179 8oj0:La (3.3) BS01 rna ? GO:0002181 ... P46776 38383785
    850180 8oj0:Lb (3.3) BS01 rna ? GO:0002181 ... P47914 38383785
    850181 8oj0:Lc (3.3) BS01 rna ? GO:0002181 ... P62888 38383785
    850182 8oj0:Ld (3.3) BS01 rna ? GO:0002181 ... P62899 38383785
    850183 8oj0:Le (3.3) BS01 rna ? GO:0002181 ... P62910 38383785
    850184 8oj0:Lf (3.3) BS01 rna ? GO:0002181 ... P18077 38383785
    850185 8oj0:Lg (3.3) BS01 rna ? GO:0002181 ... P49207 38383785
    850186 8oj0:Lg (3.3) BS02 ZN ? GO:0002181 ... P49207 38383785
    850187 8oj0:Lh (3.3) BS01 rna ? GO:0000463 ... P42766 38383785
    850188 8oj0:Lh (3.3) BS02 rna ? GO:0000463 ... P42766 38383785
    850189 8oj0:Li (3.3) BS01 rna ? GO:0002181 ... Q9Y3U8 38383785
    850190 8oj0:Lj (3.3) BS01 rna ? GO:0000448 ... P61927 38383785
    850191 8oj0:Lj (3.3) BS02 rna ? GO:0000448 ... P61927 38383785
    850192 8oj0:Lj (3.3) BS03 ZN ? GO:0000448 ... P61927 38383785
    850193 8oj0:Lk (3.3) BS01 rna ? GO:0002181 ... P63173 38383785
    850194 8oj0:Ll (3.3) BS01 rna ? GO:0002181 ... P62891 38383785
    850195 8oj0:Ll (3.3) BS02 rna ? GO:0002181 ... P62891 38383785
    850196 8oj0:Lm (3.3) BS01 rna ? GO:0002181 ... P62987 38383785
    850197 8oj0:Lm (3.3) BS02 ZN ? GO:0002181 ... P62987 38383785
    850198 8oj0:Lo (3.3) BS01 rna ? GO:0002181 ... P83881 38383785
    850199 8oj0:Lo (3.3) BS02 ZN ? GO:0002181 ... P83881 38383785
    850200 8oj0:Lp (3.3) BS01 rna ? GO:0002181 ... P61513 38383785

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).