SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    850001 8p0n:I (2.58) BS01 dna ? N/A P20986 N/A
    850002 8p0n:I (2.58) BS02 dna ? N/A P20986 N/A
    850003 8p0n:J (2.58) BS01 ZN 2.7.7.6 GO:0000428 ... P68315 N/A
    850004 8p0o:A (1.76) BS01 GDU N/A N/A N/A 37723184
    850005 8p0o:B (1.76) BS01 GDU N/A N/A N/A 37723184
    850006 8p0p:A (2.73) BS01 U2F N/A N/A N/A 37723184
    850007 8p0p:B (2.73) BS01 UDP N/A N/A N/A 37723184
    850008 8p0q:A (2.8) BS01 peptide N/A N/A N/A 37723184
    850009 8p0q:A (2.8) BS02 UDP N/A N/A N/A 37723184
    850010 8p0q:B (2.8) BS01 peptide N/A N/A N/A 37723184
    850011 8p0q:B (2.8) BS02 UDP N/A N/A N/A 37723184
    850012 8p0t:I (2.65) BS01 X5C 3.4.25.1 GO:0004298 ... A2F2T6 39366995
    850013 8p0t:J (2.65) BS01 X5C ? GO:0000502 ... A2F3H9 39366995
    850014 8p0t:L (2.65) BS01 X5C 3.4.25.1 GO:0004298 ... A2DD57 39366995
    850015 8p0t:M (2.65) BS01 X5C ? GO:0000502 ... A2F716 39366995
    850016 8p0t:W (2.65) BS01 X5C 3.4.25.1 GO:0004298 ... A2F2T6 39366995
    850017 8p0t:X (2.65) BS01 X5C ? GO:0000502 ... A2F3H9 39366995
    850018 8p0t:Z (2.65) BS01 X5C 3.4.25.1 GO:0004298 ... A2DD57 39366995
    850019 8p0t:a (2.65) BS01 X5C ? GO:0000502 ... A2F716 39366995
    850020 8p0u:A (2.92) BS01 rna ? GO:0003723 ... P27194 N/A
    850021 8p0u:A (2.92) BS02 rna ? GO:0003723 ... P27194 N/A
    850022 8p0u:B (2.92) BS01 rna 2.7.7.48 GO:0000166 ... O41353 N/A
    850023 8p0u:B (2.92) BS02 rna 2.7.7.48 GO:0000166 ... O41353 N/A
    850024 8p0u:B (2.92) BS03 MG 2.7.7.48 GO:0000166 ... O41353 N/A
    850025 8p0y:A (4.12) BS01 peptide ? GO:0019013 ... A0A1Q1NMU1 37888996
    850026 8p10:L (3.26) BS01 peptide ? GO:0019013 ... A0A1Q1NMU1 37888996
    850027 8p11:D (1.9) BS01 WD5 ? GO:0004888 ... P58154 N/A
    850028 8p11:E (1.9) BS01 WD5 ? GO:0004888 ... P58154 N/A
    850029 8p11:F (1.9) BS01 WD5 ? GO:0004888 ... P58154 N/A
    850030 8p11:G (1.9) BS01 WD5 ? GO:0004888 ... P58154 N/A
    850031 8p11:G (1.9) BS02 WD5 ? GO:0004888 ... P58154 N/A
    850032 8p11:H (1.9) BS01 WD5 ? GO:0004888 ... P58154 N/A
    850033 8p11:H (1.9) BS02 WD5 ? GO:0004888 ... P58154 N/A
    850034 8p11:I (1.9) BS01 WD5 ? GO:0004888 ... P58154 N/A
    850035 8p14:A (2.57) BS01 VIS 3.4.19.12 GO:0004843 ... Q96RU2 38816515
    850036 8p16:6 (2.77) BS01 rna ? GO:0003747 ... P07012 N/A
    850037 8p16:6 (2.77) BS02 rna ? GO:0003747 ... P07012 N/A
    850038 8p16:6 (2.77) BS03 rna ? GO:0003747 ... P07012 N/A
    850039 8p16:6 (2.77) BS04 rna ? GO:0003747 ... P07012 N/A
    850040 8p16:B (2.77) BS01 rna ? GO:0000027 ... P60422 N/A
    850041 8p16:B (2.77) BS02 rna ? GO:0000027 ... P60422 N/A
    850042 8p16:C (2.77) BS01 rna ? GO:0000027 ... P60438 N/A
    850043 8p16:D (2.77) BS01 rna ? GO:0001070 ... P60723 N/A
    850044 8p16:E (2.77) BS01 rna ? GO:0000027 ... P62399 N/A
    850045 8p16:E (2.77) BS02 rna ? GO:0000027 ... P62399 N/A
    850046 8p16:E (2.77) BS03 rna ? GO:0000027 ... P62399 N/A
    850047 8p16:F (2.77) BS01 rna ? GO:0000027 ... P0AG55 N/A
    850048 8p16:G (2.77) BS01 rna ? GO:0002181 ... P0A7R1 N/A
    850049 8p16:I (2.77) BS01 rna ? GO:0000027 ... P0A7J7 N/A
    850050 8p16:J (2.77) BS01 rna ? GO:0002181 ... P0AA10 N/A
    850051 8p16:K (2.77) BS01 rna ? GO:0002181 ... P0ADY3 N/A
    850052 8p16:K (2.77) BS02 rna ? GO:0002181 ... P0ADY3 N/A
    850053 8p16:L (2.77) BS01 rna ? GO:0002181 ... P02413 N/A
    850054 8p16:M (2.77) BS01 rna ? GO:0000027 ... P0ADY7 N/A
    850055 8p16:M (2.77) BS02 rna ? GO:0000027 ... P0ADY7 N/A
    850056 8p16:N (2.77) BS01 rna ? GO:0000027 ... P0AG44 N/A
    850057 8p16:O (2.77) BS01 rna ? GO:0002181 ... P0C018 N/A
    850058 8p16:O (2.77) BS02 rna ? GO:0002181 ... P0C018 N/A
    850059 8p16:P (2.77) BS01 rna ? GO:0000027 ... P0A7K6 N/A
    850060 8p16:P (2.77) BS02 rna ? GO:0000027 ... P0A7K6 N/A
    850061 8p16:Q (2.77) BS01 rna ? GO:0000027 ... P0A7L3 N/A
    850062 8p16:R (2.77) BS01 rna ? GO:0002181 ... P0AG48 N/A
    850063 8p16:S (2.77) BS01 rna ? GO:0002181 ... P61175 N/A
    850064 8p16:T (2.77) BS01 rna ? GO:0000027 ... P0ADZ0 N/A
    850065 8p16:U (2.77) BS01 rna ? GO:0000027 ... P60624 N/A
    850066 8p16:V (2.77) BS01 rna ? GO:0000027 ... P68919 N/A
    850067 8p16:V (2.77) BS02 rna ? GO:0000027 ... P68919 N/A
    850068 8p16:W (2.77) BS01 rna ? GO:0000027 ... P0A7L8 N/A
    850069 8p16:W (2.77) BS02 rna ? GO:0000027 ... P0A7L8 N/A
    850070 8p16:X (2.77) BS01 rna ? GO:0000027 ... P0A7M2 N/A
    850071 8p16:Y (2.77) BS01 rna ? GO:0000027 ... P0A7M6 N/A
    850072 8p16:Z (2.77) BS01 rna ? GO:0000027 ... P0AG51 N/A
    850073 8p16:Z (2.77) BS02 rna ? GO:0000027 ... P0AG51 N/A
    850074 8p16:a (2.77) BS01 rna ? GO:0002181 ... P0A7M9 N/A
    850075 8p16:a (2.77) BS02 rna ? GO:0002181 ... P0A7M9 N/A
    850076 8p16:a (2.77) BS03 ZN ? GO:0002181 ... P0A7M9 N/A
    850077 8p16:b (2.77) BS01 rna ? GO:0000027 ... P0A7N4 N/A
    850078 8p16:c (2.77) BS01 rna ? GO:0000027 ... P0A7N9 N/A
    850079 8p16:d (2.77) BS01 rna ? GO:0002181 ... P0A7P5 N/A
    850080 8p16:e (2.77) BS01 rna ? GO:0002181 ... P0A7Q1 N/A
    850081 8p16:f (2.77) BS01 rna ? GO:0002181 ... P0A7Q6 N/A
    850082 8p16:f (2.77) BS02 ZN ? GO:0002181 ... P0A7Q6 N/A
    850083 8p16:g (2.77) BS01 rna ? GO:0000028 ... P0A7V0 N/A
    850084 8p16:h (2.77) BS01 rna ? GO:0000028 ... P0A7V3 N/A
    850085 8p16:h (2.77) BS02 rna ? GO:0000028 ... P0A7V3 N/A
    850086 8p16:i (2.77) BS01 rna ? GO:0000028 ... P0A7V8 N/A
    850087 8p16:j (2.77) BS01 rna ? GO:0000028 ... P0A7W1 N/A
    850088 8p16:j (2.77) BS02 rna ? GO:0000028 ... P0A7W1 N/A
    850089 8p16:k (2.77) BS01 rna ? GO:0002181 ... P02358 N/A
    850090 8p16:l (2.77) BS01 rna ? GO:0000028 ... P02359 N/A
    850091 8p16:l (2.77) BS02 rna ? GO:0000028 ... P02359 N/A
    850092 8p16:m (2.77) BS01 rna ? GO:0000028 ... P0A7W7 N/A
    850093 8p16:n (2.77) BS01 rna ? GO:0000049 ... P0A7X3 N/A
    850094 8p16:n (2.77) BS02 rna ? GO:0000049 ... P0A7X3 N/A
    850095 8p16:o (2.77) BS01 rna ? GO:0000049 ... P0A7R5 N/A
    850096 8p16:p (2.77) BS01 rna ? GO:0002181 ... P0A7R9 N/A
    850097 8p16:q (2.77) BS01 rna ? GO:0000049 ... P0A7S3 N/A
    850098 8p16:r (2.77) BS01 rna ? GO:0000049 ... P0A7S9 N/A
    850099 8p16:r (2.77) BS02 rna ? GO:0000049 ... P0A7S9 N/A
    850100 8p16:s (2.77) BS01 rna ? GO:0000028 ... P0AG59 N/A
    850101 8p16:t (2.77) BS01 rna ? GO:0000028 ... P0ADZ4 N/A
    850102 8p16:t (2.77) BS02 rna ? GO:0000028 ... P0ADZ4 N/A
    850103 8p16:u (2.77) BS01 rna ? GO:0000028 ... P0A7T3 N/A
    850104 8p16:v (2.77) BS01 rna ? GO:0000028 ... P0AG63 N/A
    850105 8p16:w (2.77) BS01 rna ? GO:0002181 ... P0A7T7 N/A
    850106 8p16:x (2.77) BS01 rna ? GO:0000028 ... P0A7U3 N/A
    850107 8p16:y (2.77) BS01 rna ? GO:0000028 ... P0A7U7 N/A
    850108 8p16:z (2.77) BS01 rna ? GO:0000028 ... P68679 N/A
    850109 8p16:z (2.77) BS02 rna ? GO:0000028 ... P68679 N/A
    850110 8p17:6 (2.78) BS01 rna ? GO:0003747 ... P07012 N/A
    850111 8p17:6 (2.78) BS02 rna ? GO:0003747 ... P07012 N/A
    850112 8p17:6 (2.78) BS03 rna ? GO:0003747 ... P07012 N/A
    850113 8p17:6 (2.78) BS04 rna ? GO:0003747 ... P07012 N/A
    850114 8p17:B (2.78) BS01 rna ? GO:0000027 ... P60422 N/A
    850115 8p17:B (2.78) BS02 rna ? GO:0000027 ... P60422 N/A
    850116 8p17:C (2.78) BS01 rna ? GO:0000027 ... P60438 N/A
    850117 8p17:D (2.78) BS01 rna ? GO:0001070 ... P60723 N/A
    850118 8p17:E (2.78) BS01 rna ? GO:0000027 ... P62399 N/A
    850119 8p17:E (2.78) BS02 rna ? GO:0000027 ... P62399 N/A
    850120 8p17:E (2.78) BS03 rna ? GO:0000027 ... P62399 N/A
    850121 8p17:F (2.78) BS01 rna ? GO:0000027 ... P0AG55 N/A
    850122 8p17:G (2.78) BS01 rna ? GO:0002181 ... P0A7R1 N/A
    850123 8p17:I (2.78) BS01 rna ? GO:0000027 ... P0A7J7 N/A
    850124 8p17:J (2.78) BS01 rna ? GO:0002181 ... P0AA10 N/A
    850125 8p17:K (2.78) BS01 rna ? GO:0002181 ... P0ADY3 N/A
    850126 8p17:K (2.78) BS02 rna ? GO:0002181 ... P0ADY3 N/A
    850127 8p17:L (2.78) BS01 rna ? GO:0002181 ... P02413 N/A
    850128 8p17:M (2.78) BS01 rna ? GO:0000027 ... P0ADY7 N/A
    850129 8p17:M (2.78) BS02 rna ? GO:0000027 ... P0ADY7 N/A
    850130 8p17:N (2.78) BS01 rna ? GO:0000027 ... P0AG44 N/A
    850131 8p17:O (2.78) BS01 rna ? GO:0002181 ... P0C018 N/A
    850132 8p17:O (2.78) BS02 rna ? GO:0002181 ... P0C018 N/A
    850133 8p17:P (2.78) BS01 rna ? GO:0000027 ... P0A7K6 N/A
    850134 8p17:P (2.78) BS02 rna ? GO:0000027 ... P0A7K6 N/A
    850135 8p17:Q (2.78) BS01 rna ? GO:0000027 ... P0A7L3 N/A
    850136 8p17:R (2.78) BS01 rna ? GO:0002181 ... P0AG48 N/A
    850137 8p17:S (2.78) BS01 rna ? GO:0002181 ... P61175 N/A
    850138 8p17:T (2.78) BS01 rna ? GO:0000027 ... P0ADZ0 N/A
    850139 8p17:U (2.78) BS01 rna ? GO:0000027 ... P60624 N/A
    850140 8p17:V (2.78) BS01 rna ? GO:0000027 ... P68919 N/A
    850141 8p17:W (2.78) BS01 rna ? GO:0000027 ... P0A7L8 N/A
    850142 8p17:W (2.78) BS02 rna ? GO:0000027 ... P0A7L8 N/A
    850143 8p17:X (2.78) BS01 rna ? GO:0000027 ... P0A7M2 N/A
    850144 8p17:Y (2.78) BS01 rna ? GO:0000027 ... P0A7M6 N/A
    850145 8p17:Z (2.78) BS01 rna ? GO:0000027 ... P0AG51 N/A
    850146 8p17:Z (2.78) BS02 rna ? GO:0000027 ... P0AG51 N/A
    850147 8p17:a (2.78) BS01 rna ? GO:0002181 ... P0A7M9 N/A
    850148 8p17:a (2.78) BS02 rna ? GO:0002181 ... P0A7M9 N/A
    850149 8p17:a (2.78) BS03 ZN ? GO:0002181 ... P0A7M9 N/A
    850150 8p17:b (2.78) BS01 rna ? GO:0000027 ... P0A7N4 N/A
    850151 8p17:c (2.78) BS01 rna ? GO:0000027 ... P0A7N9 N/A
    850152 8p17:d (2.78) BS01 rna ? GO:0002181 ... P0A7P5 N/A
    850153 8p17:e (2.78) BS01 rna ? GO:0002181 ... P0A7Q1 N/A
    850154 8p17:f (2.78) BS01 rna ? GO:0002181 ... P0A7Q6 N/A
    850155 8p17:f (2.78) BS02 ZN ? GO:0002181 ... P0A7Q6 N/A
    850156 8p17:g (2.78) BS01 rna ? GO:0000028 ... P0A7V0 N/A
    850157 8p17:h (2.78) BS01 rna ? GO:0000028 ... P0A7V3 N/A
    850158 8p17:h (2.78) BS02 rna ? GO:0000028 ... P0A7V3 N/A
    850159 8p17:i (2.78) BS01 rna ? GO:0000028 ... P0A7V8 N/A
    850160 8p17:j (2.78) BS01 rna ? GO:0000028 ... P0A7W1 N/A
    850161 8p17:j (2.78) BS02 rna ? GO:0000028 ... P0A7W1 N/A
    850162 8p17:k (2.78) BS01 rna ? GO:0002181 ... P02358 N/A
    850163 8p17:l (2.78) BS01 rna ? GO:0000028 ... P02359 N/A
    850164 8p17:l (2.78) BS02 rna ? GO:0000028 ... P02359 N/A
    850165 8p17:m (2.78) BS01 rna ? GO:0000028 ... P0A7W7 N/A
    850166 8p17:n (2.78) BS01 rna ? GO:0000049 ... P0A7X3 N/A
    850167 8p17:n (2.78) BS02 rna ? GO:0000049 ... P0A7X3 N/A
    850168 8p17:o (2.78) BS01 rna ? GO:0000049 ... P0A7R5 N/A
    850169 8p17:p (2.78) BS01 rna ? GO:0002181 ... P0A7R9 N/A
    850170 8p17:q (2.78) BS01 rna ? GO:0000049 ... P0A7S3 N/A
    850171 8p17:r (2.78) BS01 rna ? GO:0000049 ... P0A7S9 N/A
    850172 8p17:r (2.78) BS02 rna ? GO:0000049 ... P0A7S9 N/A
    850173 8p17:s (2.78) BS01 rna ? GO:0000028 ... P0AG59 N/A
    850174 8p17:t (2.78) BS01 rna ? GO:0000028 ... P0ADZ4 N/A
    850175 8p17:t (2.78) BS02 rna ? GO:0000028 ... P0ADZ4 N/A
    850176 8p17:u (2.78) BS01 rna ? GO:0000028 ... P0A7T3 N/A
    850177 8p17:v (2.78) BS01 rna ? GO:0000028 ... P0AG63 N/A
    850178 8p17:w (2.78) BS01 rna ? GO:0002181 ... P0A7T7 N/A
    850179 8p17:x (2.78) BS01 rna ? GO:0000028 ... P0A7U3 N/A
    850180 8p17:y (2.78) BS01 rna ? GO:0000028 ... P0A7U7 N/A
    850181 8p17:z (2.78) BS01 rna ? GO:0000028 ... P68679 N/A
    850182 8p17:z (2.78) BS02 rna ? GO:0000028 ... P68679 N/A
    850183 8p18:6 (2.77) BS01 rna ? GO:0003747 ... P07012 N/A
    850184 8p18:6 (2.77) BS02 rna ? GO:0003747 ... P07012 N/A
    850185 8p18:6 (2.77) BS03 rna ? GO:0003747 ... P07012 N/A
    850186 8p18:6 (2.77) BS04 rna ? GO:0003747 ... P07012 N/A
    850187 8p18:B (2.77) BS01 rna ? GO:0000027 ... P60422 N/A
    850188 8p18:C (2.77) BS01 rna ? GO:0000027 ... P60438 N/A
    850189 8p18:D (2.77) BS01 rna ? GO:0001070 ... P60723 N/A
    850190 8p18:E (2.77) BS01 rna ? GO:0000027 ... P62399 N/A
    850191 8p18:E (2.77) BS02 rna ? GO:0000027 ... P62399 N/A
    850192 8p18:E (2.77) BS03 rna ? GO:0000027 ... P62399 N/A
    850193 8p18:F (2.77) BS01 rna ? GO:0000027 ... P0AG55 N/A
    850194 8p18:G (2.77) BS01 rna ? GO:0002181 ... P0A7R1 N/A
    850195 8p18:I (2.77) BS01 rna ? GO:0000027 ... P0A7J7 N/A
    850196 8p18:J (2.77) BS01 rna ? GO:0002181 ... P0AA10 N/A
    850197 8p18:K (2.77) BS01 rna ? GO:0002181 ... P0ADY3 N/A
    850198 8p18:K (2.77) BS02 rna ? GO:0002181 ... P0ADY3 N/A
    850199 8p18:L (2.77) BS01 rna ? GO:0002181 ... P02413 N/A
    850200 8p18:M (2.77) BS01 rna ? GO:0000027 ... P0ADY7 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).