SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    850201 8oj0:Lp (3.3) BS02 ZN ? GO:0002181 ... P61513 38383785
    850202 8oj0:Lr (3.3) BS01 rna ? GO:0002181 ... P46779 38383785
    850203 8oj0:Lz (3.3) BS01 rna ? GO:0002181 ... P62906 38383785
    850204 8oj1:A (2.57) BS01 dna ? GO:0003677 ... A0A0G3FH20 40086441
    850205 8oj2:A (2.56) BS01 dna ? GO:0003677 ... A0A176WDW1 40086441
    850206 8oj3:0 (3.5) BS01 rna N/A GO:0002181 ... A0A1D8PLC9 N/A
    850207 8oj3:0 (3.5) BS02 rna N/A GO:0002181 ... A0A1D8PLC9 N/A
    850208 8oj3:12 (3.5) BS01 rna N/A GO:0000027 ... Q5AJF7 N/A
    850209 8oj3:2 (3.5) BS01 rna N/A GO:0003735 ... A0A1D8PGY0 N/A
    850210 8oj3:2 (3.5) BS02 rna N/A GO:0003735 ... A0A1D8PGY0 N/A
    850211 8oj3:2 (3.5) BS03 MG N/A GO:0003735 ... A0A1D8PGY0 N/A
    850212 8oj3:5 (3.5) BS01 rna N/A GO:0002181 ... A0A1D8PM41 N/A
    850213 8oj3:6 (3.5) BS01 rna N/A GO:0003735 ... A0A1D8PPT5 N/A
    850214 8oj3:6 (3.5) BS02 MG N/A GO:0003735 ... A0A1D8PPT5 N/A
    850215 8oj3:7 (3.5) BS01 rna N/A GO:0002181 ... Q5A6A1 N/A
    850216 8oj3:7 (3.5) BS02 rna N/A GO:0002181 ... Q5A6A1 N/A
    850217 8oj3:8 (3.5) BS01 rna N/A GO:0000027 ... A0A1D8PPS1 N/A
    850218 8oj3:8 (3.5) BS02 rna N/A GO:0000027 ... A0A1D8PPS1 N/A
    850219 8oj3:9 (3.5) BS01 rna N/A GO:0002181 ... A0A1D8PCQ5 N/A
    850220 8oj3:9 (3.5) BS02 rna N/A GO:0002181 ... A0A1D8PCQ5 N/A
    850221 8oj3:AA (3.5) BS01 rna N/A GO:0003735 ... A0A1D8PFG4 N/A
    850222 8oj3:AB (3.5) BS01 rna N/A GO:0003723 ... A0A1D8PSC5 N/A
    850223 8oj3:AB (3.5) BS02 MG N/A GO:0003723 ... A0A1D8PSC5 N/A
    850224 8oj3:AC (3.5) BS01 rna N/A GO:0002181 ... A0A1D8PF57 N/A
    850225 8oj3:AD (3.5) BS01 rna N/A GO:0003674 ... A0A1D8PM75 N/A
    850226 8oj3:AE (3.5) BS01 rna N/A GO:0002181 ... A0A1D8PHF5 N/A
    850227 8oj3:AF (3.5) BS01 rna N/A GO:0003735 ... A0A1D8PPN6 N/A
    850228 8oj3:AG (3.5) BS01 rna N/A GO:0002181 ... A0A1D8PHH4 N/A
    850229 8oj3:AH (3.5) BS01 rna N/A GO:0003735 ... A0A1D8PDZ1 N/A
    850230 8oj3:AH (3.5) BS02 ZN N/A GO:0003735 ... A0A1D8PDZ1 N/A
    850231 8oj3:AI (3.5) BS01 rna N/A GO:0000463 ... A0A1D8PK30 N/A
    850232 8oj3:AI (3.5) BS02 rna N/A GO:0000463 ... A0A1D8PK30 N/A
    850233 8oj3:AJ (3.5) BS01 rna N/A GO:0002181 ... A0A1D8PH21 N/A
    850234 8oj3:AJ (3.5) BS02 MG N/A GO:0002181 ... A0A1D8PH21 N/A
    850235 8oj3:AJ (3.5) BS03 MG N/A GO:0002181 ... A0A1D8PH21 N/A
    850236 8oj3:AK (3.5) BS01 rna N/A GO:0000448 ... A0A1D8PF45 N/A
    850237 8oj3:AK (3.5) BS02 rna N/A GO:0000448 ... A0A1D8PF45 N/A
    850238 8oj3:AK (3.5) BS03 ZN N/A GO:0000448 ... A0A1D8PF45 N/A
    850239 8oj3:AL (3.5) BS01 rna N/A GO:0002181 ... A0A1D8PG16 N/A
    850240 8oj3:AM (3.5) BS01 rna N/A GO:0002181 ... A0A1D8PDT4 N/A
    850241 8oj3:AM (3.5) BS02 rna N/A GO:0002181 ... A0A1D8PDT4 N/A
    850242 8oj3:AN (3.5) BS01 rna N/A GO:0003735 ... A0A1D8PL68 N/A
    850243 8oj3:AN (3.5) BS02 ZN N/A GO:0003735 ... A0A1D8PL68 N/A
    850244 8oj3:AP (3.5) BS01 rna N/A GO:0002181 ... A0A1D8PEV4 N/A
    850245 8oj3:AP (3.5) BS02 3K5 N/A GO:0002181 ... A0A1D8PEV4 N/A
    850246 8oj3:AP (3.5) BS03 ZN N/A GO:0002181 ... A0A1D8PEV4 N/A
    850247 8oj3:AP (3.5) BS04 MG N/A GO:0002181 ... A0A1D8PEV4 N/A
    850248 8oj3:AQ (3.5) BS01 rna N/A GO:0003735 ... A0A1D8PP14 N/A
    850249 8oj3:AQ (3.5) BS02 ZN N/A GO:0003735 ... A0A1D8PP14 N/A
    850250 8oj3:AR (3.5) BS01 rna N/A GO:0001403 ... P83774 N/A
    850251 8oj3:AW (3.5) BS01 rna N/A GO:0002181 ... A0A1D8PF08 N/A
    850252 8oj3:AW (3.5) BS02 MG N/A GO:0002181 ... A0A1D8PF08 N/A
    850253 8oj3:AX (3.5) BS01 rna N/A GO:0000027 ... Q59LS1 N/A
    850254 8oj3:AY (3.5) BS01 rna N/A GO:0003723 ... A0A1D8PFV1 N/A
    850255 8oj3:AY (3.5) BS02 rna N/A GO:0003723 ... A0A1D8PFV1 N/A
    850256 8oj3:AY (3.5) BS03 MG N/A GO:0003723 ... A0A1D8PFV1 N/A
    850257 8oj3:AZ (3.5) BS01 rna N/A GO:0000027 ... Q5AGZ7 N/A
    850258 8oj3:AZ (3.5) BS02 rna N/A GO:0000027 ... Q5AGZ7 N/A
    850259 8oj3:BA (3.5) BS01 rna N/A GO:0002181 ... A0A1D8PCX8 N/A
    850260 8oj3:BB (3.5) BS01 rna N/A GO:0000463 ... A0A1D8PDL6 N/A
    850261 8oj3:BB (3.5) BS02 rna N/A GO:0000463 ... A0A1D8PDL6 N/A
    850262 8oj3:BB (3.5) BS03 MG N/A GO:0000463 ... A0A1D8PDL6 N/A
    850263 8oj3:BC (3.5) BS01 rna N/A GO:0000470 ... Q5ANA1 N/A
    850264 8oj3:BC (3.5) BS02 rna N/A GO:0000470 ... Q5ANA1 N/A
    850265 8oj3:BD (3.5) BS01 rna N/A GO:0002181 ... Q5AEN2 N/A
    850266 8oj3:BE (3.5) BS01 rna N/A GO:0003735 ... Q5AIB8 N/A
    850267 8oj3:BE (3.5) BS02 rna N/A GO:0003735 ... Q5AIB8 N/A
    850268 8oj3:BE (3.5) BS03 MG N/A GO:0003735 ... Q5AIB8 N/A
    850269 8oj3:BF (3.5) BS01 rna N/A GO:0003723 ... A0A1D8PHW1 N/A
    850270 8oj3:BF (3.5) BS02 rna N/A GO:0003723 ... A0A1D8PHW1 N/A
    850271 8oj3:BG (3.5) BS01 rna N/A GO:0003723 ... O59931 N/A
    850272 8oj3:BG (3.5) BS02 rna N/A GO:0003723 ... O59931 N/A
    850273 8oj3:BG (3.5) BS03 rna N/A GO:0003723 ... O59931 N/A
    850274 8oj3:BH (3.5) BS01 rna N/A GO:0003723 ... A0A1D8PFL9 N/A
    850275 8oj3:BI (3.5) BS01 rna N/A GO:0002181 ... Q5A6R1 N/A
    850276 8oj3:BI (3.5) BS02 rna N/A GO:0002181 ... Q5A6R1 N/A
    850277 8oj3:BJ (3.5) BS01 rna N/A GO:0003729 ... Q5AB87 N/A
    850278 8oj3:BK (3.5) BS01 rna N/A GO:0002181 ... Q59TE0 N/A
    850279 8oj3:BK (3.5) BS02 rna N/A GO:0002181 ... Q59TE0 N/A
    850280 8oj3:BK (3.5) BS03 MG N/A GO:0002181 ... Q59TE0 N/A
    850281 8oj3:BL (3.5) BS01 rna N/A GO:0002181 ... A0A1D8PK43 N/A
    850282 8oj3:BM (3.5) BS01 rna N/A GO:0003723 ... A0A1D8PK40 N/A
    850283 8oj3:BM (3.5) BS02 rna N/A GO:0003723 ... A0A1D8PK40 N/A
    850284 8oj3:BN (3.5) BS01 rna N/A GO:0002181 ... A0A1D8PLC9 N/A
    850285 8oj3:BN (3.5) BS02 rna N/A GO:0002181 ... A0A1D8PLC9 N/A
    850286 8oj3:BO (3.5) BS01 rna N/A GO:0003735 ... A0A1D8PGY0 N/A
    850287 8oj3:BO (3.5) BS02 rna N/A GO:0003735 ... A0A1D8PGY0 N/A
    850288 8oj3:BO (3.5) BS03 MG N/A GO:0003735 ... A0A1D8PGY0 N/A
    850289 8oj3:BP (3.5) BS01 rna N/A GO:0002181 ... A0A1D8PM41 N/A
    850290 8oj3:BQ (3.5) BS01 rna N/A GO:0003735 ... A0A1D8PPT5 N/A
    850291 8oj3:BQ (3.5) BS02 rna N/A GO:0003735 ... A0A1D8PPT5 N/A
    850292 8oj3:BQ (3.5) BS03 MG N/A GO:0003735 ... A0A1D8PPT5 N/A
    850293 8oj3:BR (3.5) BS01 rna N/A GO:0002181 ... Q5A6A1 N/A
    850294 8oj3:BR (3.5) BS02 rna N/A GO:0002181 ... Q5A6A1 N/A
    850295 8oj3:BS (3.5) BS01 rna N/A GO:0000027 ... A0A1D8PPS1 N/A
    850296 8oj3:BS (3.5) BS02 rna N/A GO:0000027 ... A0A1D8PPS1 N/A
    850297 8oj3:BT (3.5) BS01 rna N/A GO:0002181 ... A0A1D8PCQ5 N/A
    850298 8oj3:BT (3.5) BS02 rna N/A GO:0002181 ... A0A1D8PCQ5 N/A
    850299 8oj3:BU (3.5) BS01 rna N/A GO:0003735 ... A0A1D8PFG4 N/A
    850300 8oj3:BV (3.5) BS01 rna N/A GO:0003723 ... A0A1D8PSC5 N/A
    850301 8oj3:BW (3.5) BS01 rna N/A GO:0002181 ... A0A1D8PF57 N/A
    850302 8oj3:BX (3.5) BS01 rna N/A GO:0003674 ... A0A1D8PM75 N/A
    850303 8oj3:BY (3.5) BS01 rna N/A GO:0002181 ... A0A1D8PHF5 N/A
    850304 8oj3:BZ (3.5) BS01 rna N/A GO:0003735 ... A0A1D8PPN6 N/A
    850305 8oj3:C (3.5) BS01 rna N/A GO:0000028 ... O42817 N/A
    850306 8oj3:CA (3.5) BS01 rna N/A GO:0002181 ... A0A1D8PHH4 N/A
    850307 8oj3:CB (3.5) BS01 rna N/A GO:0003735 ... A0A1D8PDZ1 N/A
    850308 8oj3:CC (3.5) BS01 rna N/A GO:0000463 ... A0A1D8PK30 N/A
    850309 8oj3:CC (3.5) BS02 rna N/A GO:0000463 ... A0A1D8PK30 N/A
    850310 8oj3:CD (3.5) BS01 rna N/A GO:0002181 ... A0A1D8PH21 N/A
    850311 8oj3:CE (3.5) BS01 rna N/A GO:0000448 ... A0A1D8PF45 N/A
    850312 8oj3:CE (3.5) BS02 rna N/A GO:0000448 ... A0A1D8PF45 N/A
    850313 8oj3:CE (3.5) BS03 ZN N/A GO:0000448 ... A0A1D8PF45 N/A
    850314 8oj3:CF (3.5) BS01 rna N/A GO:0002181 ... A0A1D8PG16 N/A
    850315 8oj3:CG (3.5) BS01 rna N/A GO:0002181 ... A0A1D8PDT4 N/A
    850316 8oj3:CG (3.5) BS02 rna N/A GO:0002181 ... A0A1D8PDT4 N/A
    850317 8oj3:CH (3.5) BS01 rna N/A GO:0003735 ... A0A1D8PL68 N/A
    850318 8oj3:CH (3.5) BS02 ZN N/A GO:0003735 ... A0A1D8PL68 N/A
    850319 8oj3:CJ (3.5) BS01 rna N/A GO:0002181 ... A0A1D8PEV4 N/A
    850320 8oj3:CJ (3.5) BS02 3K5 N/A GO:0002181 ... A0A1D8PEV4 N/A
    850321 8oj3:CJ (3.5) BS03 ZN N/A GO:0002181 ... A0A1D8PEV4 N/A
    850322 8oj3:CK (3.5) BS01 rna N/A GO:0003735 ... A0A1D8PP14 N/A
    850323 8oj3:CK (3.5) BS02 ZN N/A GO:0003735 ... A0A1D8PP14 N/A
    850324 8oj3:CL (3.5) BS01 rna N/A GO:0000723 ... A0A1D8PK71 N/A
    850325 8oj3:CL (3.5) BS02 rna N/A GO:0000723 ... A0A1D8PK71 N/A
    850326 8oj3:CN (3.5) BS01 rna N/A GO:0000028 ... O42817 N/A
    850327 8oj3:CO (3.5) BS01 rna N/A GO:0003735 ... P40910 N/A
    850328 8oj3:CP (3.5) BS01 rna N/A GO:0000054 ... Q5A900 N/A
    850329 8oj3:CQ (3.5) BS01 rna N/A GO:0003723 ... A0A1D8PSV5 N/A
    850330 8oj3:CR (3.5) BS01 rna N/A GO:0002181 ... A0A1D8PCI6 N/A
    850331 8oj3:CS (3.5) BS01 rna N/A GO:0003723 ... Q5AG43 N/A
    850332 8oj3:CT (3.5) BS01 rna N/A GO:0003674 ... A0A1D8PL99 N/A
    850333 8oj3:CU (3.5) BS01 rna N/A GO:0003735 ... Q5AJ93 N/A
    850334 8oj3:CV (3.5) BS01 rna N/A GO:0002181 ... Q59T44 N/A
    850335 8oj3:CV (3.5) BS02 rna N/A GO:0002181 ... Q59T44 N/A
    850336 8oj3:CW (3.5) BS01 rna N/A GO:0003723 ... A0A1D8PGY8 N/A
    850337 8oj3:CX (3.5) BS01 rna N/A GO:0003674 ... A0A1D8PI15 N/A
    850338 8oj3:CY (3.5) BS01 rna N/A GO:0003674 ... A0A1D8PN83 N/A
    850339 8oj3:CZ (3.5) BS01 rna N/A GO:0000028 ... Q5ADQ6 N/A
    850340 8oj3:D (3.5) BS01 rna N/A GO:0003735 ... P40910 N/A
    850341 8oj3:DA (3.5) BS01 rna N/A GO:0000462 ... A0A1D8PPE0 N/A
    850342 8oj3:DB (3.5) BS01 rna N/A GO:0000028 ... A0A1D8PDT3 N/A
    850343 8oj3:DB (3.5) BS02 MG N/A GO:0000028 ... A0A1D8PDT3 N/A
    850344 8oj3:DC (3.5) BS01 rna N/A GO:0003723 ... A0A1D8PK22 N/A
    850345 8oj3:DD (3.5) BS01 rna N/A GO:0000462 ... A0A1D8PCW6 N/A
    850346 8oj3:DE (3.5) BS01 rna N/A GO:0000028 ... A0A1D8PEY9 N/A
    850347 8oj3:DF (3.5) BS01 rna N/A GO:0000054 ... A0A1D8PQQ5 N/A
    850348 8oj3:DG (3.5) BS01 rna N/A GO:0003674 ... A0A1D8PK61 N/A
    850349 8oj3:DG (3.5) BS02 MG N/A GO:0003674 ... A0A1D8PK61 N/A
    850350 8oj3:DH (3.5) BS01 rna N/A GO:0000462 ... Q5A389 N/A
    850351 8oj3:DI (3.5) BS01 rna N/A GO:0000447 ... A0A1D8PCG7 N/A
    850352 8oj3:DJ (3.5) BS01 rna N/A GO:0003674 ... Q96W54 N/A
    850353 8oj3:DK (3.5) BS01 rna N/A GO:0003674 ... A0A1D8PDU3 N/A
    850354 8oj3:DK (3.5) BS02 MG N/A GO:0003674 ... A0A1D8PDU3 N/A
    850355 8oj3:DL (3.5) BS01 rna N/A GO:0002181 ... Q5A7K0 N/A
    850356 8oj3:DM (3.5) BS01 rna N/A GO:0003674 ... A0A1D8PNQ6 N/A
    850357 8oj3:DN (3.5) BS01 rna N/A GO:0003729 ... Q5ALV6 N/A
    850358 8oj3:DN (3.5) BS02 ZN N/A GO:0003729 ... Q5ALV6 N/A
    850359 8oj3:DO (3.5) BS01 rna N/A GO:0003674 ... A0A1D8PTI7 N/A
    850360 8oj3:DP (3.5) BS01 rna N/A GO:0000028 ... A0A1D8PQN0 N/A
    850361 8oj3:DQ (3.5) BS01 rna N/A GO:0002181 ... A0A1D8PTR4 N/A
    850362 8oj3:DR (3.5) BS01 rna N/A GO:0003735 ... A0A1D8PSK2 N/A
    850363 8oj3:DS (3.5) BS01 rna N/A GO:0000028 ... Q5A109 N/A
    850364 8oj3:DT (3.5) BS01 rna N/A GO:0001403 ... P83774 N/A
    850365 8oj3:E (3.5) BS01 rna N/A GO:0000054 ... Q5A900 N/A
    850366 8oj3:F (3.5) BS01 rna N/A GO:0003723 ... A0A1D8PSV5 N/A
    850367 8oj3:G (3.5) BS01 rna N/A GO:0002181 ... A0A1D8PCI6 N/A
    850368 8oj3:H (3.5) BS01 rna N/A GO:0003723 ... Q5AG43 N/A
    850369 8oj3:I (3.5) BS01 rna N/A GO:0003674 ... A0A1D8PL99 N/A
    850370 8oj3:J (3.5) BS01 rna N/A GO:0003735 ... Q5AJ93 N/A
    850371 8oj3:K (3.5) BS01 rna N/A GO:0002181 ... Q59T44 N/A
    850372 8oj3:K (3.5) BS02 rna N/A GO:0002181 ... Q59T44 N/A
    850373 8oj3:K (3.5) BS03 MG N/A GO:0002181 ... Q59T44 N/A
    850374 8oj3:L (3.5) BS01 rna N/A GO:0003723 ... A0A1D8PGY8 N/A
    850375 8oj3:M (3.5) BS01 rna N/A GO:0003674 ... A0A1D8PI15 N/A
    850376 8oj3:N (3.5) BS01 rna N/A GO:0003674 ... A0A1D8PN83 N/A
    850377 8oj3:O (3.5) BS01 rna N/A GO:0000028 ... Q5ADQ6 N/A
    850378 8oj3:P (3.5) BS01 rna N/A GO:0000462 ... A0A1D8PPE0 N/A
    850379 8oj3:P0 (3.5) BS01 rna N/A GO:0002181 ... A0A1D8PQS0 N/A
    850380 8oj3:P0 (3.5) BS02 MG N/A GO:0002181 ... A0A1D8PQS0 N/A
    850381 8oj3:Q (3.5) BS01 rna N/A GO:0000028 ... A0A1D8PDT3 N/A
    850382 8oj3:Q (3.5) BS02 MG N/A GO:0000028 ... A0A1D8PDT3 N/A
    850383 8oj3:R (3.5) BS01 rna N/A GO:0003723 ... A0A1D8PK22 N/A
    850384 8oj3:R (3.5) BS02 rna N/A GO:0003723 ... A0A1D8PK22 N/A
    850385 8oj3:S (3.5) BS01 rna N/A GO:0000462 ... A0A1D8PCW6 N/A
    850386 8oj3:T (3.5) BS01 rna N/A GO:0000028 ... A0A1D8PEY9 N/A
    850387 8oj3:T (3.5) BS02 MG N/A GO:0000028 ... A0A1D8PEY9 N/A
    850388 8oj3:U (3.5) BS01 rna N/A GO:0000054 ... A0A1D8PQQ5 N/A
    850389 8oj3:V (3.5) BS01 rna N/A GO:0003674 ... A0A1D8PK61 N/A
    850390 8oj3:W (3.5) BS01 rna N/A GO:0000462 ... Q5A389 N/A
    850391 8oj3:Y (3.5) BS01 rna N/A GO:0003674 ... Q96W54 N/A
    850392 8oj3:Y (3.5) BS02 MG N/A GO:0003674 ... Q96W54 N/A
    850393 8oj3:Z (3.5) BS01 rna N/A GO:0003674 ... A0A1D8PDU3 N/A
    850394 8oj3:a (3.5) BS01 rna N/A GO:0002181 ... Q5A7K0 N/A
    850395 8oj3:b (3.5) BS01 rna N/A GO:0003674 ... A0A1D8PNQ6 N/A
    850396 8oj3:c (3.5) BS01 rna N/A GO:0003729 ... Q5ALV6 N/A
    850397 8oj3:c (3.5) BS02 ZN N/A GO:0003729 ... Q5ALV6 N/A
    850398 8oj3:d (3.5) BS01 rna N/A GO:0003674 ... A0A1D8PTI7 N/A
    850399 8oj3:e (3.5) BS01 rna N/A GO:0000028 ... A0A1D8PQN0 N/A
    850400 8oj3:f (3.5) BS01 rna N/A GO:0002181 ... A0A1D8PTR4 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).