SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    850201 8p18:M (2.77) BS02 rna ? GO:0000027 ... P0ADY7 N/A
    850202 8p18:N (2.77) BS01 rna ? GO:0000027 ... P0AG44 N/A
    850203 8p18:O (2.77) BS01 rna ? GO:0002181 ... P0C018 N/A
    850204 8p18:O (2.77) BS02 rna ? GO:0002181 ... P0C018 N/A
    850205 8p18:P (2.77) BS01 rna ? GO:0000027 ... P0A7K6 N/A
    850206 8p18:P (2.77) BS02 rna ? GO:0000027 ... P0A7K6 N/A
    850207 8p18:Q (2.77) BS01 rna ? GO:0000027 ... P0A7L3 N/A
    850208 8p18:R (2.77) BS01 rna ? GO:0002181 ... P0AG48 N/A
    850209 8p18:S (2.77) BS01 rna ? GO:0002181 ... P61175 N/A
    850210 8p18:T (2.77) BS01 rna ? GO:0000027 ... P0ADZ0 N/A
    850211 8p18:U (2.77) BS01 rna ? GO:0000027 ... P60624 N/A
    850212 8p18:V (2.77) BS01 rna ? GO:0000027 ... P68919 N/A
    850213 8p18:V (2.77) BS02 rna ? GO:0000027 ... P68919 N/A
    850214 8p18:W (2.77) BS01 rna ? GO:0000027 ... P0A7L8 N/A
    850215 8p18:W (2.77) BS02 rna ? GO:0000027 ... P0A7L8 N/A
    850216 8p18:X (2.77) BS01 rna ? GO:0000027 ... P0A7M2 N/A
    850217 8p18:Y (2.77) BS01 rna ? GO:0000027 ... P0A7M6 N/A
    850218 8p18:Z (2.77) BS01 rna ? GO:0000027 ... P0AG51 N/A
    850219 8p18:Z (2.77) BS02 rna ? GO:0000027 ... P0AG51 N/A
    850220 8p18:a (2.77) BS01 rna ? GO:0002181 ... P0A7M9 N/A
    850221 8p18:a (2.77) BS02 rna ? GO:0002181 ... P0A7M9 N/A
    850222 8p18:a (2.77) BS03 ZN ? GO:0002181 ... P0A7M9 N/A
    850223 8p18:b (2.77) BS01 rna ? GO:0000027 ... P0A7N4 N/A
    850224 8p18:c (2.77) BS01 rna ? GO:0000027 ... P0A7N9 N/A
    850225 8p18:d (2.77) BS01 rna ? GO:0002181 ... P0A7P5 N/A
    850226 8p18:e (2.77) BS01 rna ? GO:0002181 ... P0A7Q1 N/A
    850227 8p18:f (2.77) BS01 rna ? GO:0002181 ... P0A7Q6 N/A
    850228 8p18:f (2.77) BS02 ZN ? GO:0002181 ... P0A7Q6 N/A
    850229 8p18:g (2.77) BS01 rna ? GO:0000028 ... P0A7V0 N/A
    850230 8p18:h (2.77) BS01 rna ? GO:0000028 ... P0A7V3 N/A
    850231 8p18:i (2.77) BS01 rna ? GO:0000028 ... P0A7V8 N/A
    850232 8p18:j (2.77) BS01 rna ? GO:0000028 ... P0A7W1 N/A
    850233 8p18:j (2.77) BS02 rna ? GO:0000028 ... P0A7W1 N/A
    850234 8p18:k (2.77) BS01 rna ? GO:0002181 ... P02358 N/A
    850235 8p18:l (2.77) BS01 rna ? GO:0000028 ... P02359 N/A
    850236 8p18:l (2.77) BS02 rna ? GO:0000028 ... P02359 N/A
    850237 8p18:m (2.77) BS01 rna ? GO:0000028 ... P0A7W7 N/A
    850238 8p18:n (2.77) BS01 rna ? GO:0000049 ... P0A7X3 N/A
    850239 8p18:n (2.77) BS02 rna ? GO:0000049 ... P0A7X3 N/A
    850240 8p18:o (2.77) BS01 rna ? GO:0000049 ... P0A7R5 N/A
    850241 8p18:p (2.77) BS01 rna ? GO:0002181 ... P0A7R9 N/A
    850242 8p18:q (2.77) BS01 rna ? GO:0000049 ... P0A7S3 N/A
    850243 8p18:r (2.77) BS01 rna ? GO:0000049 ... P0A7S9 N/A
    850244 8p18:r (2.77) BS02 rna ? GO:0000049 ... P0A7S9 N/A
    850245 8p18:s (2.77) BS01 rna ? GO:0000028 ... P0AG59 N/A
    850246 8p18:t (2.77) BS01 rna ? GO:0000028 ... P0ADZ4 N/A
    850247 8p18:t (2.77) BS02 rna ? GO:0000028 ... P0ADZ4 N/A
    850248 8p18:u (2.77) BS01 rna ? GO:0000028 ... P0A7T3 N/A
    850249 8p18:v (2.77) BS01 rna ? GO:0000028 ... P0AG63 N/A
    850250 8p18:w (2.77) BS01 rna ? GO:0002181 ... P0A7T7 N/A
    850251 8p18:x (2.77) BS01 rna ? GO:0000028 ... P0A7U3 N/A
    850252 8p18:y (2.77) BS01 rna ? GO:0000028 ... P0A7U7 N/A
    850253 8p18:z (2.77) BS01 rna ? GO:0000028 ... P68679 N/A
    850254 8p18:z (2.77) BS02 rna ? GO:0000028 ... P68679 N/A
    850255 8p1c:A (1.58) BS01 NA 3.2.1.17 GO:0003796 ... P00698 37830774
    850256 8p1d:A (1.6) BS01 NA 3.2.1.17 GO:0003796 ... P00698 37830774
    850257 8p1e:D (2.1) BS01 WD2 ? GO:0004888 ... P58154 N/A
    850258 8p1e:E (2.1) BS01 WD2 ? GO:0004888 ... P58154 N/A
    850259 8p1e:I (2.1) BS01 WD2 ? GO:0004888 ... P58154 N/A
    850260 8p1e:J (2.1) BS01 WD2 ? GO:0004888 ... P58154 N/A
    850261 8p1f:A (2.1) BS01 WCW ? GO:0004888 ... P58154 N/A
    850262 8p1f:E (2.1) BS01 WCW ? GO:0004888 ... P58154 N/A
    850263 8p1f:G (2.1) BS01 WCW ? GO:0004888 ... P58154 N/A
    850264 8p1f:H (2.1) BS01 WCW ? GO:0004888 ... P58154 N/A
    850265 8p1f:I (2.1) BS01 WCW ? GO:0004888 ... P58154 N/A
    850266 8p1h:A (1.95) BS01 AZI ? N/A P36544
    P63104
    37804592
    850267 8p1i:A (2.97) BS01 WQW ? GO:0005886 ... A0A332Z023 38177534
    850268 8p1i:B (2.97) BS01 WR6 ? GO:0005886 ... A0A332Z023 38177534
    850269 8p1m:A (3.23) BS01 rna 2.7.7.48
    3.1.-.-
    GO:0000166 ... P23456 N/A
    850270 8p1m:A (3.23) BS02 ATP 2.7.7.48
    3.1.-.-
    GO:0000166 ... P23456 N/A
    850271 8p1m:A (3.23) BS03 MG 2.7.7.48
    3.1.-.-
    GO:0000166 ... P23456 N/A
    850272 8p1m:A (3.23) BS04 MG 2.7.7.48
    3.1.-.-
    GO:0000166 ... P23456 N/A
    850273 8p1n:A (2.79) BS01 rna 2.7.7.48
    3.1.-.-
    GO:0000166 ... P23456 39652621
    850274 8p1o:A (2.17) BS01 WEW ? N/A Q9NZQ7 38229762
    850275 8p1o:B (2.17) BS01 WEW ? N/A Q9NZQ7 38229762
    850276 8p1p:A (2.76) BS01 WF0 3.4.19.12 GO:0004843 ... Q96RU2 38816515
    850277 8p1p:B (2.76) BS01 WF0 3.4.19.12 GO:0004843 ... Q96RU2 38816515
    850278 8p1q:A (2.79) BS01 WFT 3.4.19.12 GO:0004843 ... Q96RU2 38816515
    850279 8p1q:B (2.79) BS01 WFT 3.4.19.12 GO:0004843 ... Q96RU2 38816515
    850280 8p1s:A (1.9) BS01 FUC N/A GO:0004553 ... A0A0F4KU40 N/A
    850281 8p1s:B (1.9) BS01 FUC N/A GO:0004553 ... A0A0F4KU40 N/A
    850282 8p1s:C (1.9) BS01 FUC N/A GO:0004553 ... A0A0F4KU40 N/A
    850283 8p1s:D (1.9) BS01 FUC N/A GO:0004553 ... A0A0F4KU40 N/A
    850284 8p1s:E (1.9) BS01 FUC N/A GO:0004553 ... A0A0F4KU40 N/A
    850285 8p1s:F (1.9) BS01 FUC N/A GO:0004553 ... A0A0F4KU40 N/A
    850286 8p1t:AAA (1.442) BS01 SAM 2.5.1.6 GO:0004478 ... P31153 37591318
    850287 8p1t:AAA (1.442) BS02 WJL 2.5.1.6 GO:0004478 ... P31153 37591318
    850288 8p1v:AAA (1.54) BS01 SAM 2.5.1.6 GO:0004478 ... P31153 37591318
    850289 8p1v:AAA (1.54) BS02 WIV 2.5.1.6 GO:0004478 ... P31153 37591318
    850290 8p1w:AAA (1.15) BS01 MTA 2.5.1.6 GO:0004478 ... P31153 37591318
    850291 8p1w:AAA (1.15) BS02 WK5 2.5.1.6 GO:0004478 ... P31153 37591318
    850292 8p1x:AAA (2.03) BS01 PO4 N/A GO:0016757 ... N/A 38000019
    850293 8p1x:AAA (2.03) BS02 PO4 N/A GO:0016757 ... N/A 38000019
    850294 8p1x:AAA (2.03) BS03 UPG N/A GO:0016757 ... N/A 38000019
    850295 8p20:AAA (2.848) BS01 BJT N/A GO:0016757 ... N/A 38000019
    850296 8p20:AAA (2.848) BS02 UDP N/A GO:0016757 ... N/A 38000019
    850297 8p20:BBB (2.848) BS01 BJT N/A GO:0016757 ... N/A 38000019
    850298 8p20:BBB (2.848) BS02 UDP N/A GO:0016757 ... N/A 38000019
    850299 8p20:CCC (2.848) BS01 BJT N/A GO:0016757 ... N/A 38000019
    850300 8p20:CCC (2.848) BS02 UDP N/A GO:0016757 ... N/A 38000019
    850301 8p20:DDD (2.848) BS01 BJT N/A GO:0016757 ... N/A 38000019
    850302 8p20:DDD (2.848) BS02 UDP N/A GO:0016757 ... N/A 38000019
    850303 8p22:A (2.2) BS01 WNO ? GO:0004888 ... P58154 N/A
    850304 8p22:A (2.2) BS02 WNO ? GO:0004888 ... P58154 N/A
    850305 8p22:B (2.2) BS01 WNO ? GO:0004888 ... P58154 N/A
    850306 8p22:B (2.2) BS02 WNO ? GO:0004888 ... P58154 N/A
    850307 8p22:C (2.2) BS01 WNO ? GO:0004888 ... P58154 N/A
    850308 8p22:C (2.2) BS02 WNO ? GO:0004888 ... P58154 N/A
    850309 8p22:D (2.2) BS01 WNO ? GO:0004888 ... P58154 N/A
    850310 8p22:E (2.2) BS01 WNO ? GO:0004888 ... P58154 N/A
    850311 8p22:E (2.2) BS02 WNO ? GO:0004888 ... P58154 N/A
    850312 8p22:F (2.2) BS01 WNO ? GO:0004888 ... P58154 N/A
    850313 8p22:G (2.2) BS01 WNO ? GO:0004888 ... P58154 N/A
    850314 8p22:H (2.2) BS01 WNO ? GO:0004888 ... P58154 N/A
    850315 8p22:H (2.2) BS02 WNO ? GO:0004888 ... P58154 N/A
    850316 8p22:I (2.2) BS01 WNO ? GO:0004888 ... P58154 N/A
    850317 8p22:I (2.2) BS02 WNO ? GO:0004888 ... P58154 N/A
    850318 8p22:J (2.2) BS01 WNO ? GO:0004888 ... P58154 N/A
    850319 8p22:J (2.2) BS02 WNO ? GO:0004888 ... P58154 N/A
    850320 8p23:A (3.17) BS01 ATP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    850321 8p23:A (3.17) BS02 ATP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    850322 8p23:B (3.17) BS01 CTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    850323 8p23:B (3.17) BS02 ATP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    850324 8p23:B (3.17) BS03 ATP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    850325 8p23:B (3.17) BS04 ZN 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    850326 8p27:A (2.73) BS01 DTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    850327 8p27:A (2.73) BS02 MG 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    850328 8p27:A (2.73) BS03 DTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    850329 8p27:B (2.73) BS01 DTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    850330 8p27:B (2.73) BS02 DTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    850331 8p27:B (2.73) BS03 MG 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    850332 8p28:A (2.77) BS01 DTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    850333 8p28:A (2.77) BS02 DTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    850334 8p28:A (2.77) BS03 DTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    850335 8p28:A (2.77) BS04 MG 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    850336 8p28:A (2.77) BS05 DTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    850337 8p28:B (2.77) BS01 DTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    850338 8p28:B (2.77) BS02 DTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    850339 8p28:B (2.77) BS03 DTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    850340 8p28:B (2.77) BS04 DTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    850341 8p28:B (2.77) BS05 MG 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    850342 8p28:C (2.77) BS01 DTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    850343 8p28:C (2.77) BS02 DTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    850344 8p28:C (2.77) BS03 DTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    850345 8p28:C (2.77) BS04 MG 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    850346 8p28:C (2.77) BS05 DTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    850347 8p28:D (2.77) BS01 DTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    850348 8p28:D (2.77) BS02 DTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    850349 8p28:D (2.77) BS03 DTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    850350 8p29:A (2.06) BS01 WJC ? N/A Q15562 37770003
    850351 8p2a:A (2.0) BS01 FMN ? GO:0010181 ... A0A0K8PVQ4 37455753
    850352 8p2b:A (2.6) BS01 FMN N/A GO:0010181 ... N/A 37455753
    850353 8p2b:B (2.6) BS01 FMN N/A GO:0010181 ... N/A 37455753
    850354 8p2c:A (2.59) BS01 DTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    850355 8p2c:A (2.59) BS02 DTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    850356 8p2c:A (2.59) BS03 DTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    850357 8p2c:A (2.59) BS04 MG 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    850358 8p2c:A (2.59) BS05 DTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    850359 8p2c:B (2.59) BS01 DTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    850360 8p2c:B (2.59) BS02 DTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    850361 8p2c:B (2.59) BS03 DTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    850362 8p2c:B (2.59) BS04 DTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    850363 8p2c:B (2.59) BS05 MG 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    850364 8p2c:C (2.59) BS01 DTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    850365 8p2c:C (2.59) BS02 DTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    850366 8p2c:C (2.59) BS03 DTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    850367 8p2c:C (2.59) BS04 MG 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    850368 8p2c:C (2.59) BS05 DTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    850369 8p2c:D (2.59) BS01 DTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    850370 8p2c:D (2.59) BS02 DTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    850371 8p2c:D (2.59) BS03 DTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    850372 8p2c:D (2.59) BS04 DTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    850373 8p2c:D (2.59) BS05 MG 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    850374 8p2d:A (2.59) BS01 DTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    850375 8p2d:A (2.59) BS02 DTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    850376 8p2d:B (2.59) BS01 DTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    850377 8p2d:B (2.59) BS02 DTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    850378 8p2f:1 (2.44) BS01 rna ? GO:0003735 ... Q2FZ60 38902339
    850379 8p2f:2 (2.44) BS01 rna ? GO:0003735 ... Q2FW14 38902339
    850380 8p2f:3 (2.44) BS01 rna ? GO:0003735 ... P0A0G2 38902339
    850381 8p2f:3 (2.44) BS02 rna ? GO:0003735 ... P0A0G2 38902339
    850382 8p2f:4 (2.44) BS01 rna ? GO:0003735 ... Q2FWD8 38902339
    850383 8p2f:4 (2.44) BS02 rna ? GO:0003735 ... Q2FWD8 38902339
    850384 8p2f:5 (2.44) BS01 rna ? GO:0003735 ... Q2FZF1 38902339
    850385 8p2f:5 (2.44) BS02 ZN ? GO:0003735 ... Q2FZF1 38902339
    850386 8p2f:6 (2.44) BS01 rna ? GO:0003735 ... Q2FYU6 38902339
    850387 8p2f:7 (2.44) BS01 rna ? GO:0003735 ... Q2FUQ0 38902339
    850388 8p2f:8 (2.44) BS01 rna ? GO:0003735 ... Q2FXQ0 38902339
    850389 8p2f:8 (2.44) BS02 MG ? GO:0003735 ... Q2FXQ0 38902339
    850390 8p2f:9 (2.44) BS01 rna ? GO:0003735 ... Q2FW29 38902339
    850391 8p2f:9 (2.44) BS02 ZN ? GO:0003735 ... Q2FW29 38902339
    850392 8p2f:E (2.44) BS01 rna ? GO:0003746 ... Q2G0N1 38902339
    850393 8p2f:E (2.44) BS02 rna ? GO:0003746 ... Q2G0N1 38902339
    850394 8p2f:E (2.44) BS03 rna ? GO:0003746 ... Q2G0N1 38902339
    850395 8p2f:E (2.44) BS04 rna ? GO:0003746 ... Q2G0N1 38902339
    850396 8p2f:E (2.44) BS05 GDP ? GO:0003746 ... Q2G0N1 38902339
    850397 8p2f:E (2.44) BS06 WUX ? GO:0003746 ... Q2G0N1 38902339
    850398 8p2f:G (2.44) BS01 rna ? GO:0002181 ... P60430 38902339
    850399 8p2f:H (2.44) BS01 rna ? GO:0003735 ... Q2FW06 38902339
    850400 8p2f:I (2.44) BS01 rna ? GO:0003735 ... Q2FW07 38902339

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).