SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
  • Sort results by
    << < 4243 4244 4245 4246 4247 4248 4249 4250 4251 4252 4253 4254 4255 4256 4257 4258 4259 4260 4261 4262 4263 > >>
    Go to page

    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    850401 8p2f:J (2.44) BS01 rna ? GO:0000049 ... Q2FW18 38902339
    850402 8p2f:J (2.44) BS02 rna ? GO:0000049 ... Q2FW18 38902339
    850403 8p2f:J (2.44) BS03 rna ? GO:0000049 ... Q2FW18 38902339
    850404 8p2f:K (2.44) BS01 rna ? GO:0002181 ... Q2FW21 38902339
    850405 8p2f:M (2.44) BS01 rna ? GO:0003729 ... Q2FW38 38902339
    850406 8p2f:N (2.44) BS01 rna ? GO:0003735 ... Q2FW16 38902339
    850407 8p2f:N (2.44) BS02 rna ? GO:0003735 ... Q2FW16 38902339
    850408 8p2f:O (2.44) BS01 rna ? GO:0003735 ... P0A0F8 38902339
    850409 8p2f:P (2.44) BS01 rna ? GO:0000049 ... Q2FW13 38902339
    850410 8p2f:P (2.44) BS02 rna ? GO:0000049 ... Q2FW13 38902339
    850411 8p2f:Q (2.44) BS01 rna ? GO:0003735 ... Q2FW33 38902339
    850412 8p2f:R (2.44) BS01 rna ? GO:0003735 ... Q2FW22 38902339
    850413 8p2f:R (2.44) BS02 rna ? GO:0003735 ... Q2FW22 38902339
    850414 8p2f:S (2.44) BS01 rna ? GO:0003735 ... Q2FZ42 38902339
    850415 8p2f:S (2.44) BS02 rna ? GO:0003735 ... Q2FZ42 38902339
    850416 8p2f:T (2.44) BS01 rna ? GO:0000027 ... Q2FXQ1 38902339
    850417 8p2f:U (2.44) BS01 rna ? GO:0003723 ... Q2FXS8 38902339
    850418 8p2f:V (2.44) BS01 rna ? GO:0003735 ... Q2FW11 38902339
    850419 8p2f:W (2.44) BS01 rna ? GO:0003735 ... Q2FW08 38902339
    850420 8p2f:X (2.44) BS01 rna ? GO:0003723 ... Q2FW17 38902339
    850421 8p2f:Y (2.44) BS01 rna ? GO:0003723 ... Q2G0S0 38902339
    850422 8p2f:Z (2.44) BS01 rna ? GO:0003735 ... Q2FXT0 38902339
    850423 8p2f:Z (2.44) BS02 rna ? GO:0003735 ... Q2FXT0 38902339
    850424 8p2f:c (2.44) BS01 rna ? GO:0003735 ... Q2FZ25 38902339
    850425 8p2f:d (2.44) BS01 rna ? GO:0003676 ... Q2FW12 38902339
    850426 8p2f:e (2.44) BS01 rna ? GO:0003723 ... Q2FXK6 38902339
    850427 8p2f:f (2.44) BS01 rna ? GO:0003723 ... Q2FW23 38902339
    850428 8p2f:g (2.44) BS01 rna ? GO:0003735 ... Q2G113 38902339
    850429 8p2f:h (2.44) BS01 rna ? GO:0000028 ... P48940 38902339
    850430 8p2f:h (2.44) BS02 rna ? GO:0000028 ... P48940 38902339
    850431 8p2f:i (2.44) BS01 rna ? GO:0003735 ... Q2FW20 38902339
    850432 8p2f:j (2.44) BS01 rna ? GO:0003723 ... Q2FW39 38902339
    850433 8p2f:j (2.44) BS02 rna ? GO:0003723 ... Q2FW39 38902339
    850434 8p2f:k (2.44) BS01 rna ? GO:0000049 ... A0A0D1JTN2 38902339
    850435 8p2f:l (2.44) BS01 rna ? GO:0003735 ... Q2FW31 38902339
    850436 8p2f:m (2.44) BS01 rna ? GO:0000049 ... P0A0H0 38902339
    850437 8p2f:n (2.44) BS01 rna ? GO:0000049 ... Q2FW30 38902339
    850438 8p2f:o (2.44) BS01 rna ? GO:0003735 ... Q2FW19 38902339
    850439 8p2f:o (2.44) BS02 ZN ? GO:0003735 ... Q2FW19 38902339
    850440 8p2f:p (2.44) BS01 rna ? GO:0003735 ... Q2G2Q1 38902339
    850441 8p2f:p (2.44) BS02 rna ? GO:0003735 ... Q2G2Q1 38902339
    850442 8p2f:q (2.44) BS01 rna ? GO:0003735 ... Q2FZ45 38902339
    850443 8p2f:r (2.44) BS01 rna ? GO:0003735 ... Q2FW15 38902339
    850444 8p2f:s (2.44) BS01 rna ? GO:0003735 ... Q2G111 38902339
    850445 8p2f:t (2.44) BS01 rna ? GO:0000028 ... Q2FW10 38902339
    850446 8p2f:u (2.44) BS01 rna ? GO:0003723 ... Q2FXY6 38902339
    850447 8p2g:1 (2.02) BS01 rna ? GO:0003735 ... Q2FZ60 38902339
    850448 8p2g:2 (2.02) BS01 rna ? GO:0003735 ... Q2FW14 38902339
    850449 8p2g:3 (2.02) BS01 rna ? GO:0003735 ... P0A0G2 38902339
    850450 8p2g:3 (2.02) BS02 rna ? GO:0003735 ... P0A0G2 38902339
    850451 8p2g:4 (2.02) BS01 rna ? GO:0003735 ... Q2FWD8 38902339
    850452 8p2g:5 (2.02) BS01 rna ? GO:0003735 ... Q2FZF1 38902339
    850453 8p2g:5 (2.02) BS02 ZN ? GO:0003735 ... Q2FZF1 38902339
    850454 8p2g:6 (2.02) BS01 rna ? GO:0003735 ... Q2FYU6 38902339
    850455 8p2g:7 (2.02) BS01 rna ? GO:0003735 ... Q2FUQ0 38902339
    850456 8p2g:8 (2.02) BS01 rna ? GO:0003735 ... Q2FXQ0 38902339
    850457 8p2g:9 (2.02) BS01 rna ? GO:0003735 ... Q2FW29 38902339
    850458 8p2g:9 (2.02) BS02 ZN ? GO:0003735 ... Q2FW29 38902339
    850459 8p2g:E (2.02) BS01 rna ? GO:0003746 ... Q2G0N1 38902339
    850460 8p2g:E (2.02) BS02 rna ? GO:0003746 ... Q2G0N1 38902339
    850461 8p2g:E (2.02) BS03 GDP ? GO:0003746 ... Q2G0N1 38902339
    850462 8p2g:E (2.02) BS04 WUX ? GO:0003746 ... Q2G0N1 38902339
    850463 8p2g:G (2.02) BS01 rna ? GO:0002181 ... P60430 38902339
    850464 8p2g:H (2.02) BS01 rna ? GO:0003735 ... Q2FW06 38902339
    850465 8p2g:I (2.02) BS01 rna ? GO:0003735 ... Q2FW07 38902339
    850466 8p2g:J (2.02) BS01 rna ? GO:0000049 ... Q2FW18 38902339
    850467 8p2g:J (2.02) BS02 rna ? GO:0000049 ... Q2FW18 38902339
    850468 8p2g:K (2.02) BS01 rna ? GO:0002181 ... Q2FW21 38902339
    850469 8p2g:M (2.02) BS01 rna ? GO:0003729 ... Q2FW38 38902339
    850470 8p2g:N (2.02) BS01 rna ? GO:0003735 ... Q2FW16 38902339
    850471 8p2g:N (2.02) BS02 rna ? GO:0003735 ... Q2FW16 38902339
    850472 8p2g:O (2.02) BS01 rna ? GO:0003735 ... P0A0F8 38902339
    850473 8p2g:P (2.02) BS01 rna ? GO:0000049 ... Q2FW13 38902339
    850474 8p2g:P (2.02) BS02 rna ? GO:0000049 ... Q2FW13 38902339
    850475 8p2g:Q (2.02) BS01 rna ? GO:0003735 ... Q2FW33 38902339
    850476 8p2g:R (2.02) BS01 rna ? GO:0003735 ... Q2FW22 38902339
    850477 8p2g:R (2.02) BS02 rna ? GO:0003735 ... Q2FW22 38902339
    850478 8p2g:S (2.02) BS01 rna ? GO:0003735 ... Q2FZ42 38902339
    850479 8p2g:S (2.02) BS02 rna ? GO:0003735 ... Q2FZ42 38902339
    850480 8p2g:T (2.02) BS01 rna ? GO:0000027 ... Q2FXQ1 38902339
    850481 8p2g:U (2.02) BS01 rna ? GO:0003723 ... Q2FXS8 38902339
    850482 8p2g:V (2.02) BS01 rna ? GO:0003735 ... Q2FW11 38902339
    850483 8p2g:W (2.02) BS01 rna ? GO:0003735 ... Q2FW08 38902339
    850484 8p2g:X (2.02) BS01 rna ? GO:0003723 ... Q2FW17 38902339
    850485 8p2g:Y (2.02) BS01 rna ? GO:0003723 ... Q2G0S0 38902339
    850486 8p2g:Z (2.02) BS01 rna ? GO:0003735 ... Q2FXT0 38902339
    850487 8p2g:Z (2.02) BS02 rna ? GO:0003735 ... Q2FXT0 38902339
    850488 8p2g:c (2.02) BS01 rna ? GO:0003735 ... Q2FZ25 38902339
    850489 8p2g:d (2.02) BS01 rna ? GO:0003676 ... Q2FW12 38902339
    850490 8p2g:e (2.02) BS01 rna ? GO:0003723 ... Q2FXK6 38902339
    850491 8p2g:f (2.02) BS01 rna ? GO:0003723 ... Q2FW23 38902339
    850492 8p2g:g (2.02) BS01 rna ? GO:0003735 ... Q2G113 38902339
    850493 8p2g:h (2.02) BS01 rna ? GO:0000028 ... P48940 38902339
    850494 8p2g:i (2.02) BS01 rna ? GO:0003735 ... Q2FW20 38902339
    850495 8p2g:j (2.02) BS01 rna ? GO:0003723 ... Q2FW39 38902339
    850496 8p2g:j (2.02) BS02 rna ? GO:0003723 ... Q2FW39 38902339
    850497 8p2g:k (2.02) BS01 rna ? GO:0000049 ... A0A0D1JTN2 38902339
    850498 8p2g:l (2.02) BS01 rna ? GO:0003735 ... Q2FW31 38902339
    850499 8p2g:m (2.02) BS01 rna ? GO:0000049 ... P0A0H0 38902339
    850500 8p2g:n (2.02) BS01 rna ? GO:0000049 ... Q2FW30 38902339
    850501 8p2g:o (2.02) BS01 rna ? GO:0003735 ... Q2FW19 38902339
    850502 8p2g:o (2.02) BS02 ZN ? GO:0003735 ... Q2FW19 38902339
    850503 8p2g:p (2.02) BS01 rna ? GO:0003735 ... Q2G2Q1 38902339
    850504 8p2g:p (2.02) BS02 rna ? GO:0003735 ... Q2G2Q1 38902339
    850505 8p2g:q (2.02) BS01 rna ? GO:0003735 ... Q2FZ45 38902339
    850506 8p2g:r (2.02) BS01 rna ? GO:0003735 ... Q2FW15 38902339
    850507 8p2g:s (2.02) BS01 rna ? GO:0003735 ... Q2G111 38902339
    850508 8p2g:t (2.02) BS01 rna ? GO:0000028 ... Q2FW10 38902339
    850509 8p2g:u (2.02) BS01 rna ? GO:0003723 ... Q2FXY6 38902339
    850510 8p2h:1 (2.49) BS01 rna ? GO:0003735 ... Q2FZ60 38902339
    850511 8p2h:2 (2.49) BS01 rna ? GO:0003735 ... Q2FW14 38902339
    850512 8p2h:3 (2.49) BS01 rna ? GO:0003735 ... P0A0G2 38902339
    850513 8p2h:3 (2.49) BS02 rna ? GO:0003735 ... P0A0G2 38902339
    850514 8p2h:4 (2.49) BS01 rna ? GO:0003735 ... Q2FWD8 38902339
    850515 8p2h:5 (2.49) BS01 rna ? GO:0003735 ... Q2FZF1 38902339
    850516 8p2h:5 (2.49) BS02 ZN ? GO:0003735 ... Q2FZF1 38902339
    850517 8p2h:6 (2.49) BS01 rna ? GO:0003735 ... Q2FYU6 38902339
    850518 8p2h:7 (2.49) BS01 rna ? GO:0003735 ... Q2FUQ0 38902339
    850519 8p2h:8 (2.49) BS01 rna ? GO:0003735 ... Q2FXQ0 38902339
    850520 8p2h:9 (2.49) BS01 rna ? GO:0003735 ... Q2FW29 38902339
    850521 8p2h:9 (2.49) BS02 ZN ? GO:0003735 ... Q2FW29 38902339
    850522 8p2h:E (2.49) BS01 rna ? GO:0003746 ... Q2G0N1 38902339
    850523 8p2h:E (2.49) BS02 rna ? GO:0003746 ... Q2G0N1 38902339
    850524 8p2h:E (2.49) BS03 GDP ? GO:0003746 ... Q2G0N1 38902339
    850525 8p2h:E (2.49) BS04 FUA ? GO:0003746 ... Q2G0N1 38902339
    850526 8p2h:G (2.49) BS01 rna ? GO:0002181 ... P60430 38902339
    850527 8p2h:G (2.49) BS02 MG ? GO:0002181 ... P60430 38902339
    850528 8p2h:H (2.49) BS01 rna ? GO:0003735 ... Q2FW06 38902339
    850529 8p2h:I (2.49) BS01 rna ? GO:0003735 ... Q2FW07 38902339
    850530 8p2h:J (2.49) BS01 rna ? GO:0000049 ... Q2FW18 38902339
    850531 8p2h:J (2.49) BS02 rna ? GO:0000049 ... Q2FW18 38902339
    850532 8p2h:K (2.49) BS01 rna ? GO:0002181 ... Q2FW21 38902339
    850533 8p2h:M (2.49) BS01 rna ? GO:0003729 ... Q2FW38 38902339
    850534 8p2h:N (2.49) BS01 rna ? GO:0003735 ... Q2FW16 38902339
    850535 8p2h:N (2.49) BS02 rna ? GO:0003735 ... Q2FW16 38902339
    850536 8p2h:O (2.49) BS01 rna ? GO:0003735 ... P0A0F8 38902339
    850537 8p2h:P (2.49) BS01 rna ? GO:0000049 ... Q2FW13 38902339
    850538 8p2h:P (2.49) BS02 rna ? GO:0000049 ... Q2FW13 38902339
    850539 8p2h:Q (2.49) BS01 rna ? GO:0003735 ... Q2FW33 38902339
    850540 8p2h:R (2.49) BS01 rna ? GO:0003735 ... Q2FW22 38902339
    850541 8p2h:R (2.49) BS02 rna ? GO:0003735 ... Q2FW22 38902339
    850542 8p2h:S (2.49) BS01 rna ? GO:0003735 ... Q2FZ42 38902339
    850543 8p2h:S (2.49) BS02 rna ? GO:0003735 ... Q2FZ42 38902339
    850544 8p2h:T (2.49) BS01 rna ? GO:0000027 ... Q2FXQ1 38902339
    850545 8p2h:U (2.49) BS01 rna ? GO:0003723 ... Q2FXS8 38902339
    850546 8p2h:V (2.49) BS01 rna ? GO:0003735 ... Q2FW11 38902339
    850547 8p2h:W (2.49) BS01 rna ? GO:0003735 ... Q2FW08 38902339
    850548 8p2h:X (2.49) BS01 rna ? GO:0003723 ... Q2FW17 38902339
    850549 8p2h:Y (2.49) BS01 rna ? GO:0003723 ... Q2G0S0 38902339
    850550 8p2h:Z (2.49) BS01 rna ? GO:0003735 ... Q2FXT0 38902339
    850551 8p2h:Z (2.49) BS02 rna ? GO:0003735 ... Q2FXT0 38902339
    850552 8p2h:c (2.49) BS01 rna ? GO:0003735 ... Q2FZ25 38902339
    850553 8p2h:d (2.49) BS01 rna ? GO:0003676 ... Q2FW12 38902339
    850554 8p2h:e (2.49) BS01 rna ? GO:0003723 ... Q2FXK6 38902339
    850555 8p2h:f (2.49) BS01 rna ? GO:0003723 ... Q2FW23 38902339
    850556 8p2h:g (2.49) BS01 rna ? GO:0003735 ... Q2G113 38902339
    850557 8p2h:h (2.49) BS01 rna ? GO:0000028 ... P48940 38902339
    850558 8p2h:i (2.49) BS01 rna ? GO:0003735 ... Q2FW20 38902339
    850559 8p2h:j (2.49) BS01 rna ? GO:0003723 ... Q2FW39 38902339
    850560 8p2h:j (2.49) BS02 rna ? GO:0003723 ... Q2FW39 38902339
    850561 8p2h:k (2.49) BS01 rna ? GO:0000049 ... A0A0D1JTN2 38902339
    850562 8p2h:l (2.49) BS01 rna ? GO:0003735 ... Q2FW31 38902339
    850563 8p2h:m (2.49) BS01 rna ? GO:0000049 ... P0A0H0 38902339
    850564 8p2h:n (2.49) BS01 rna ? GO:0000049 ... Q2FW30 38902339
    850565 8p2h:o (2.49) BS01 rna ? GO:0003735 ... Q2FW19 38902339
    850566 8p2h:o (2.49) BS02 ZN ? GO:0003735 ... Q2FW19 38902339
    850567 8p2h:p (2.49) BS01 rna ? GO:0003735 ... Q2G2Q1 38902339
    850568 8p2h:p (2.49) BS02 rna ? GO:0003735 ... Q2G2Q1 38902339
    850569 8p2h:q (2.49) BS01 rna ? GO:0003735 ... Q2FZ45 38902339
    850570 8p2h:r (2.49) BS01 rna ? GO:0003735 ... Q2FW15 38902339
    850571 8p2h:s (2.49) BS01 rna ? GO:0003735 ... Q2G111 38902339
    850572 8p2h:t (2.49) BS01 rna ? GO:0000028 ... Q2FW10 38902339
    850573 8p2h:u (2.49) BS01 rna ? GO:0003723 ... Q2FXY6 38902339
    850574 8p2i:A (3.4) BS01 ZN 2.7.7.6 GO:0000287 ... Q8U0M4 38709902
    850575 8p2i:A (3.4) BS02 ZN 2.7.7.6 GO:0000287 ... Q8U0M4 38709902
    850576 8p2i:A (3.4) BS03 MG 2.7.7.6 GO:0000287 ... Q8U0M4 38709902
    850577 8p2i:B (3.4) BS01 ZN 2.7.7.6 GO:0000428 ... Q8U0M3 38709902
    850578 8p2i:I (3.4) BS01 ZN ? GO:0005515 ... Q8U440 38709902
    850579 8p2i:N (3.4) BS01 ZN 2.7.7.6 GO:0000428 ... P60292 38709902
    850580 8p2i:P (3.4) BS01 ZN 2.7.7.6 GO:0000428 ... Q8TZI3 38709902
    850581 8p2j:A (1.73) BS01 NDP ? GO:0000166 ... A0A179UH34 37581897
    850582 8p2j:B (1.73) BS01 NDP ? GO:0000166 ... A0A179UH34 37581897
    850583 8p2j:C (1.73) BS01 NDP ? GO:0000166 ... A0A179UH34 37581897
    850584 8p2j:C (1.73) BS02 NDP ? GO:0000166 ... A0A179UH34 37581897
    850585 8p2j:D (1.73) BS01 NDP ? GO:0000166 ... A0A179UH34 37581897
    850586 8p2j:E (1.73) BS01 NDP ? GO:0000166 ... A0A179UH34 37581897
    850587 8p2j:F (1.73) BS01 NDP ? GO:0000166 ... A0A179UH34 37581897
    850588 8p2j:F (1.73) BS02 NDP ? GO:0000166 ... A0A179UH34 37581897
    850589 8p2j:G (1.73) BS01 NDP ? GO:0000166 ... A0A179UH34 37581897
    850590 8p2j:G (1.73) BS02 NDP ? GO:0000166 ... A0A179UH34 37581897
    850591 8p2j:H (1.73) BS01 NDP ? GO:0000166 ... A0A179UH34 37581897
    850592 8p2j:I (1.73) BS01 NDP ? GO:0000166 ... A0A179UH34 37581897
    850593 8p2k:AA (2.9) BS01 rna ? GO:0003735 ... G1TZ76 37347872
    850594 8p2k:AB (2.9) BS01 rna ? GO:0000028 ... G1TIB4 37347872
    850595 8p2k:AC (2.9) BS01 rna ? GO:0003735 ... G1SK22 37347872
    850596 8p2k:AC (2.9) BS02 ZN ? GO:0003735 ... G1SK22 37347872
    850597 8p2k:AD (2.9) BS01 rna ? GO:0003735 ... G1T8A2 37347872
    850598 8p2k:AE (2.9) BS01 rna ? GO:0003729 ... A0A2K5LQY6 37347872
    850599 8p2k:AE (2.9) BS02 ZN ? GO:0003729 ... A0A2K5LQY6 37347872
    850600 8p2k:AF (2.9) BS01 rna ? GO:0001891 ... G1SJB4 37347872

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).